Wall clock time and date at job start Mon Mar 30 2020 01:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42903 * 113.99591 * 2 1 4 4 H 1.09003 * 109.47460 * 30.00037 * 3 2 1 5 5 C 1.50702 * 109.46978 * 269.99796 * 3 2 1 6 6 O 1.21283 * 120.00262 * 355.00493 * 5 3 2 7 7 N 1.34777 * 119.99928 * 174.72398 * 5 3 2 8 8 C 1.46499 * 120.00199 * 180.27479 * 7 5 3 9 9 C 1.50694 * 109.47550 * 180.02562 * 8 7 5 10 10 H 1.08008 * 119.99963 * 0.02562 * 9 8 7 11 11 C 1.37878 * 120.00446 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99703 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00230 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.46919 * 60.00155 * 13 11 9 15 15 H 1.48496 * 109.47105 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47194 * 300.00219 * 13 11 9 17 17 C 1.50707 * 109.47162 * 150.00219 * 3 2 1 18 18 C 1.38241 * 119.96900 * 39.72165 * 17 3 2 19 19 C 1.38207 * 120.01839 * 179.76924 * 18 17 3 20 20 C 1.38459 * 119.97580 * 0.50837 * 19 18 17 21 21 F 1.35095 * 120.02407 * 179.76482 * 20 19 18 22 22 C 1.38460 * 119.94689 * 359.74478 * 20 19 18 23 23 C 1.38198 * 119.97366 * 359.97438 * 22 20 19 24 24 H 1.08998 * 109.47179 * 299.99744 * 1 2 3 25 25 H 1.08997 * 109.47018 * 60.00408 * 1 2 3 26 26 H 1.09001 * 109.46977 * 179.97438 * 1 2 3 27 27 H 0.97000 * 120.00317 * 0.28382 * 7 5 3 28 28 H 1.08998 * 109.47134 * 300.00670 * 8 7 5 29 29 H 1.09002 * 109.46857 * 59.99862 * 8 7 5 30 30 H 0.97000 * 119.99614 * 179.97438 * 12 11 9 31 31 H 1.07994 * 119.99490 * 0.02562 * 18 17 3 32 32 H 1.08002 * 120.00789 * 180.25408 * 19 18 17 33 33 H 1.07998 * 120.00875 * 179.97438 * 22 20 19 34 34 H 1.08004 * 119.98223 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2145 1.7644 -1.4208 6 8 1.9791 1.0106 -2.3414 7 7 2.6534 3.0143 -1.6688 8 6 2.8463 3.4624 -3.0502 9 6 3.3393 4.8865 -3.0522 10 1 3.4940 5.4057 -2.1178 11 6 3.5940 5.5262 -4.2467 12 7 3.4062 4.8938 -5.3844 13 14 4.2059 7.2912 -4.2492 14 1 5.4964 7.3687 -3.5184 15 1 4.4013 7.7454 -5.6494 16 1 3.2058 8.1627 -3.5815 17 6 3.3387 1.2640 0.7104 18 6 4.1867 0.1879 0.5266 19 6 5.4073 0.1511 1.1738 20 6 5.7760 1.1875 2.0147 21 9 6.9669 1.1502 2.6516 22 6 4.9234 2.2622 2.2020 23 6 3.7059 2.2996 1.5492 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 2.8418 3.6172 -0.9326 28 1 3.5807 2.8233 -3.5403 29 1 1.8991 3.4047 -3.5864 30 1 3.5850 5.3440 -6.2248 31 1 3.8972 -0.6223 -0.1261 32 1 6.0715 -0.6878 1.0269 33 1 5.2098 3.0710 2.8580 34 1 3.0409 3.1381 1.6949 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329989350.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:45 Heat of formation + Delta-G solvation = -106.359114 kcal Electronic energy + Delta-G solvation = -19835.884526 eV Core-core repulsion = 16455.275370 eV Total energy + Delta-G solvation = -3380.609157 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.94005 -40.03747 -38.38399 -37.02412 -34.21091 -32.55486 -31.66297 -31.19734 -27.91819 -26.99080 -25.52795 -23.08861 -22.76238 -21.70435 -19.81196 -17.79637 -17.57141 -16.93691 -16.54731 -15.90920 -15.67622 -15.60907 -14.99765 -14.58710 -14.44079 -14.04853 -13.91941 -13.59132 -13.33545 -13.19504 -12.72737 -12.24422 -11.98210 -11.93820 -11.58653 -11.28404 -11.04926 -10.96824 -10.87538 -10.41793 -10.26362 -9.44687 -9.16527 -9.10056 -8.76240 -8.45251 -7.93962 -6.18893 -4.26197 1.00544 1.19300 3.14536 3.23649 3.28586 3.29866 3.43194 3.61363 4.19344 4.19609 4.37134 4.63384 4.70374 4.82544 5.02573 5.17275 5.21274 5.32134 5.37506 5.43558 5.53438 5.74486 5.81581 5.89838 6.04222 6.17995 6.37561 6.79720 7.01529 7.26482 7.36731 7.47657 7.62510 7.93620 8.54707 8.73148 9.00721 9.40216 10.91245 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.015044 B = 0.005703 C = 0.004477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.820121 B = 4908.258876 C = 6252.883106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.356 6.356 3 C 0.114 3.886 4 H 0.091 0.909 5 C 0.480 3.520 6 O -0.537 6.537 7 N -0.706 5.706 8 C 0.250 3.750 9 C -0.544 4.544 10 H 0.062 0.938 11 C 0.065 3.935 12 N -0.885 5.885 13 Si 0.904 3.096 14 H -0.275 1.275 15 H -0.285 1.285 16 H -0.275 1.275 17 C -0.093 4.093 18 C -0.054 4.054 19 C -0.155 4.155 20 C 0.100 3.900 21 F -0.142 7.142 22 C -0.152 4.152 23 C -0.078 4.078 24 H 0.041 0.959 25 H 0.048 0.952 26 H 0.089 0.911 27 H 0.389 0.611 28 H 0.027 0.973 29 H 0.027 0.973 30 H 0.267 0.733 31 H 0.140 0.860 32 H 0.136 0.864 33 H 0.138 0.862 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.051 -6.215 16.222 17.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.273 6.273 3 C 0.052 3.948 4 H 0.109 0.891 5 C 0.263 3.737 6 O -0.414 6.414 7 N -0.355 5.355 8 C 0.130 3.870 9 C -0.582 4.582 10 H 0.081 0.919 11 C -0.139 4.139 12 N -0.522 5.522 13 Si 0.731 3.269 14 H -0.200 1.200 15 H -0.210 1.210 16 H -0.201 1.201 17 C -0.093 4.093 18 C -0.072 4.072 19 C -0.174 4.174 20 C 0.081 3.919 21 F -0.120 7.120 22 C -0.171 4.171 23 C -0.096 4.096 24 H 0.059 0.941 25 H 0.067 0.933 26 H 0.107 0.893 27 H 0.222 0.778 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.076 0.924 31 H 0.158 0.842 32 H 0.154 0.846 33 H 0.156 0.844 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.058 -6.908 15.336 16.853 hybrid contribution 0.476 1.505 0.280 1.603 sum -0.582 -5.403 15.615 16.534 Atomic orbital electron populations 1.22848 0.80459 1.03079 1.00176 1.87933 1.20142 1.24638 1.94632 1.20819 0.93047 0.87114 0.93786 0.89118 1.20841 0.79148 0.83121 0.90576 1.90680 1.51225 1.54057 1.45483 1.46464 1.64741 1.12422 1.11892 1.19124 0.97217 0.94506 0.76168 1.21167 1.46704 0.97310 0.93068 0.91939 1.24946 0.95137 0.98647 0.95204 1.69963 1.47342 1.37362 0.97572 0.86478 0.79350 0.83858 0.77258 1.20020 1.21033 1.20050 1.19492 0.95315 0.96054 0.98466 1.20919 0.91683 0.97793 0.96851 1.21161 0.98304 0.99143 0.98754 1.17763 0.82150 0.96576 0.95439 1.91490 1.43790 1.96621 1.80140 1.21037 0.94701 0.98400 1.02985 1.20829 0.96103 0.97874 0.94762 0.94087 0.93288 0.89289 0.77803 0.95459 0.95467 0.92352 0.84210 0.84581 0.84436 0.84568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.81 101.05 1.09 1.46 16 2 O -0.36 -5.40 9.20 -55.09 -0.51 -5.91 16 3 C 0.11 1.69 2.72 -29.03 -0.08 1.61 16 4 H 0.09 1.07 7.65 -51.93 -0.40 0.67 16 5 C 0.48 9.58 7.11 -10.98 -0.08 9.51 16 6 O -0.54 -13.03 16.51 -14.30 -0.24 -13.26 16 7 N -0.71 -14.66 5.51 -61.47 -0.34 -15.00 16 8 C 0.25 6.59 5.43 -5.20 -0.03 6.56 16 9 C -0.54 -14.61 9.28 -34.44 -0.32 -14.93 16 10 H 0.06 1.56 7.60 -52.48 -0.40 1.16 16 11 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 12 N -0.89 -25.94 13.29 55.43 0.74 -25.21 16 13 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 14 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 15 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 17 C -0.09 -1.27 4.93 -104.62 -0.52 -1.78 16 18 C -0.05 -0.75 9.35 -39.59 -0.37 -1.12 16 19 C -0.15 -1.94 10.03 -39.51 -0.40 -2.34 16 20 C 0.10 1.26 7.30 -39.42 -0.29 0.97 16 21 F -0.14 -1.83 17.27 2.25 0.04 -1.79 16 22 C -0.15 -1.74 10.03 -39.51 -0.40 -2.13 16 23 C -0.08 -0.89 9.67 -39.60 -0.38 -1.27 16 24 H 0.04 0.38 8.08 -51.93 -0.42 -0.03 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.39 6.90 8.32 -40.82 -0.34 6.56 16 28 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.14 1.98 7.77 -52.49 -0.41 1.58 16 32 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 33 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 34 H 0.14 1.19 8.04 -52.48 -0.42 0.77 16 LS Contribution 309.18 15.07 4.66 4.66 Total: -1.00 -32.66 309.18 -6.58 -39.24 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -4.06 Total: 3.39 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -1.86 Total: -1.79 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: 0.40 Total: -40.21 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -0.74 Total: -19.18 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.66 -6.58 -39.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329989350.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.116 kcal (2) G-P(sol) polarization free energy of solvation -32.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds