Wall clock time and date at job start Mon Mar 30 2020 01:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42903 * 113.99591 * 2 1 4 4 H 1.09003 * 109.47460 * 30.00037 * 3 2 1 5 5 C 1.50702 * 109.46978 * 269.99796 * 3 2 1 6 6 O 1.21283 * 120.00262 * 355.00493 * 5 3 2 7 7 N 1.34777 * 119.99928 * 174.72398 * 5 3 2 8 8 C 1.46499 * 120.00199 * 180.27479 * 7 5 3 9 9 C 1.50694 * 109.47550 * 180.02562 * 8 7 5 10 10 H 1.08008 * 119.99963 * 0.02562 * 9 8 7 11 11 C 1.37878 * 120.00446 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99703 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00230 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.46919 * 60.00155 * 13 11 9 15 15 H 1.48496 * 109.47105 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47194 * 300.00219 * 13 11 9 17 17 C 1.50707 * 109.47162 * 150.00219 * 3 2 1 18 18 C 1.38241 * 119.96900 * 39.72165 * 17 3 2 19 19 C 1.38207 * 120.01839 * 179.76924 * 18 17 3 20 20 C 1.38459 * 119.97580 * 0.50837 * 19 18 17 21 21 F 1.35095 * 120.02407 * 179.76482 * 20 19 18 22 22 C 1.38460 * 119.94689 * 359.74478 * 20 19 18 23 23 C 1.38198 * 119.97366 * 359.97438 * 22 20 19 24 24 H 1.08998 * 109.47179 * 299.99744 * 1 2 3 25 25 H 1.08997 * 109.47018 * 60.00408 * 1 2 3 26 26 H 1.09001 * 109.46977 * 179.97438 * 1 2 3 27 27 H 0.97000 * 120.00317 * 0.28382 * 7 5 3 28 28 H 1.08998 * 109.47134 * 300.00670 * 8 7 5 29 29 H 1.09002 * 109.46857 * 59.99862 * 8 7 5 30 30 H 0.97000 * 119.99614 * 179.97438 * 12 11 9 31 31 H 1.07994 * 119.99490 * 0.02562 * 18 17 3 32 32 H 1.08002 * 120.00789 * 180.25408 * 19 18 17 33 33 H 1.07998 * 120.00875 * 179.97438 * 22 20 19 34 34 H 1.08004 * 119.98223 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2145 1.7644 -1.4208 6 8 1.9791 1.0106 -2.3414 7 7 2.6534 3.0143 -1.6688 8 6 2.8463 3.4624 -3.0502 9 6 3.3393 4.8865 -3.0522 10 1 3.4940 5.4057 -2.1178 11 6 3.5940 5.5262 -4.2467 12 7 3.4062 4.8938 -5.3844 13 14 4.2059 7.2912 -4.2492 14 1 5.4964 7.3687 -3.5184 15 1 4.4013 7.7454 -5.6494 16 1 3.2058 8.1627 -3.5815 17 6 3.3387 1.2640 0.7104 18 6 4.1867 0.1879 0.5266 19 6 5.4073 0.1511 1.1738 20 6 5.7760 1.1875 2.0147 21 9 6.9669 1.1502 2.6516 22 6 4.9234 2.2622 2.2020 23 6 3.7059 2.2996 1.5492 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 2.8418 3.6172 -0.9326 28 1 3.5807 2.8233 -3.5403 29 1 1.8991 3.4047 -3.5864 30 1 3.5850 5.3440 -6.2248 31 1 3.8972 -0.6223 -0.1261 32 1 6.0715 -0.6878 1.0269 33 1 5.2098 3.0710 2.8580 34 1 3.0409 3.1381 1.6949 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329989350.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:45 Heat of formation + Delta-G solvation = -128.171495 kcal Electronic energy + Delta-G solvation = -19836.830382 eV Core-core repulsion = 16455.275370 eV Total energy + Delta-G solvation = -3381.555012 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.91675 -41.33937 -39.64476 -38.28545 -36.13578 -34.44547 -32.88422 -32.13114 -29.63835 -28.22210 -26.82705 -24.59956 -24.02780 -22.93212 -21.43087 -19.28417 -18.71088 -18.07905 -17.79942 -17.63508 -16.94056 -16.61384 -16.58007 -16.06400 -15.77280 -15.52059 -15.22932 -14.60207 -14.48157 -14.31985 -14.09077 -13.97281 -13.72249 -13.29526 -12.96217 -12.69626 -12.60730 -12.34567 -12.24320 -11.94049 -11.63247 -11.51677 -10.79484 -10.45419 -10.08353 -9.88383 -9.59568 -8.28743 -6.45571 0.01034 0.25973 1.43827 1.47780 1.55853 1.60992 2.19334 2.42298 2.45328 2.97508 3.06362 3.24352 3.57447 3.75371 3.87468 3.95757 4.01602 4.31979 4.43340 4.49313 4.56278 4.83995 4.90109 4.95417 5.08883 5.12005 5.20204 5.22383 5.40206 5.45669 5.64001 5.83434 5.85613 6.00353 6.64219 6.84757 7.22669 7.41626 8.83239 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.015044 B = 0.005703 C = 0.004477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.820121 B = 4908.258876 C = 6252.883106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.375 6.375 3 C 0.129 3.871 4 H 0.132 0.868 5 C 0.477 3.523 6 O -0.589 6.589 7 N -0.698 5.698 8 C 0.267 3.733 9 C -0.555 4.555 10 H 0.087 0.913 11 C 0.004 3.996 12 N -0.932 5.932 13 Si 0.983 3.017 14 H -0.263 1.263 15 H -0.287 1.287 16 H -0.259 1.259 17 C -0.109 4.109 18 C -0.073 4.073 19 C -0.160 4.160 20 C 0.090 3.910 21 F -0.145 7.145 22 C -0.147 4.147 23 C -0.070 4.070 24 H 0.075 0.925 25 H 0.027 0.973 26 H 0.105 0.895 27 H 0.408 0.592 28 H -0.016 1.016 29 H -0.010 1.010 30 H 0.268 0.732 31 H 0.125 0.875 32 H 0.148 0.852 33 H 0.166 0.834 34 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.879 -4.148 18.999 19.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.292 6.292 3 C 0.068 3.932 4 H 0.149 0.851 5 C 0.262 3.738 6 O -0.469 6.469 7 N -0.349 5.349 8 C 0.144 3.856 9 C -0.593 4.593 10 H 0.105 0.895 11 C -0.195 4.195 12 N -0.570 5.570 13 Si 0.806 3.194 14 H -0.187 1.187 15 H -0.213 1.213 16 H -0.183 1.183 17 C -0.109 4.109 18 C -0.091 4.091 19 C -0.179 4.179 20 C 0.070 3.930 21 F -0.123 7.123 22 C -0.166 4.166 23 C -0.087 4.087 24 H 0.093 0.907 25 H 0.046 0.954 26 H 0.124 0.876 27 H 0.244 0.756 28 H 0.002 0.998 29 H 0.008 0.992 30 H 0.077 0.923 31 H 0.143 0.857 32 H 0.166 0.834 33 H 0.184 0.816 34 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -0.893 -4.844 18.177 18.833 hybrid contribution 0.405 0.757 -0.574 1.033 sum -0.487 -4.088 17.603 18.078 Atomic orbital electron populations 1.23079 0.78907 1.04532 1.00727 1.87935 1.21964 1.24966 1.94345 1.20751 0.94781 0.87853 0.89864 0.85063 1.21951 0.77096 0.81951 0.92754 1.90650 1.53058 1.55271 1.47963 1.46157 1.65067 1.13426 1.10210 1.18553 0.94024 0.94369 0.78638 1.21576 1.46224 0.97266 0.94191 0.89545 1.26063 0.95053 1.03790 0.94634 1.70136 1.48701 1.39705 0.98484 0.85228 0.79308 0.77564 0.77275 1.18724 1.21272 1.18349 1.19546 0.94737 0.97032 0.99627 1.20916 0.92614 0.98095 0.97472 1.21275 0.98066 0.99881 0.98675 1.17980 0.82362 0.97098 0.95511 1.91484 1.44018 1.96667 1.80156 1.21387 0.94098 0.98432 1.02663 1.21181 0.96479 0.97778 0.93299 0.90690 0.95381 0.87648 0.75576 0.99809 0.99226 0.92279 0.85729 0.83433 0.81638 0.81067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 10.81 113.37 1.23 1.75 16 2 O -0.37 -11.06 9.20 -129.99 -1.20 -12.26 16 3 C 0.13 3.62 2.72 29.10 0.08 3.70 16 4 H 0.13 2.61 7.65 -2.39 -0.02 2.59 16 5 C 0.48 19.21 7.11 87.66 0.62 19.83 16 6 O -0.59 -29.92 16.51 15.95 0.26 -29.66 16 7 N -0.70 -28.97 5.51 -466.79 -2.57 -31.54 16 8 C 0.27 14.56 5.43 85.63 0.46 15.03 16 9 C -0.55 -29.66 9.28 25.60 0.24 -29.43 16 10 H 0.09 4.10 7.60 -2.91 -0.02 4.08 16 11 C 0.00 0.23 5.46 84.65 0.46 0.69 16 12 N -0.93 -56.02 13.29 21.45 0.28 -55.73 16 13 Si 0.98 41.66 29.54 68.60 2.03 43.69 16 14 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 15 H -0.29 -12.17 7.11 99.48 0.71 -11.46 16 16 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 17 C -0.11 -2.78 4.93 -19.86 -0.10 -2.87 16 18 C -0.07 -1.99 9.35 22.26 0.21 -1.79 16 19 C -0.16 -3.90 10.03 22.31 0.22 -3.67 16 20 C 0.09 2.08 7.30 22.38 0.16 2.24 16 21 F -0.14 -3.45 17.27 44.97 0.78 -2.68 16 22 C -0.15 -2.84 10.03 22.31 0.22 -2.61 16 23 C -0.07 -1.34 9.67 22.26 0.22 -1.13 16 24 H 0.07 1.17 8.08 -2.39 -0.02 1.15 16 25 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.41 13.64 8.32 -92.71 -0.77 12.87 16 28 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 29 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 30 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 31 H 0.12 3.70 7.77 -2.91 -0.02 3.68 16 32 H 0.15 3.07 8.06 -2.91 -0.02 3.04 16 33 H 0.17 2.24 8.06 -2.91 -0.02 2.22 16 34 H 0.17 2.05 8.04 -2.91 -0.02 2.03 16 Total: -1.00 -74.26 309.18 3.96 -70.29 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: 0.35 Total: 16.14 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: 4.03 Total: 1.75 kcal Atomic # 7 Polarization: -84.99 SS G_CDS: -2.29 Total: -87.27 kcal Atomic # 8 Polarization: -40.98 SS G_CDS: -0.93 Total: -41.92 kcal Atomic # 9 Polarization: -3.45 SS G_CDS: 0.78 Total: -2.68 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -74.26 3.96 -70.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329989350.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.878 kcal (2) G-P(sol) polarization free energy of solvation -74.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds