Wall clock time and date at job start Mon Mar 30 2020 00:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 N 1.40305 * 126.84757 * 2 1 4 4 N 1.28736 * 108.17977 * 179.73924 * 3 2 1 5 5 C 1.33293 * 109.98103 * 0.02562 * 4 3 2 6 6 C 1.35786 * 108.87191 * 359.97438 * 5 4 3 7 7 N 1.39570 * 126.67281 * 180.02562 * 6 5 4 8 8 C 1.34776 * 119.99450 * 359.96875 * 7 6 5 9 9 O 1.21585 * 120.00472 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99761 * 179.97438 * 8 7 6 11 11 C 1.47073 * 136.05935 * 359.63050 * 10 8 7 12 12 C 1.53238 * 88.08472 * 207.19967 * 11 10 8 13 13 O 1.42898 * 114.01579 * 87.71408 * 12 11 10 14 14 C 1.50689 * 114.50474 * 220.45477 * 12 11 10 15 15 H 1.08008 * 120.00083 * 93.85066 * 14 12 11 16 16 C 1.37879 * 120.00171 * 273.84461 * 14 12 11 17 17 N 1.31513 * 120.00024 * 0.02562 * 16 14 12 18 18 Si 1.86806 * 120.00161 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.46951 * 90.00138 * 18 16 14 20 20 H 1.48499 * 109.47139 * 210.00095 * 18 16 14 21 21 H 1.48501 * 109.46787 * 330.00296 * 18 16 14 22 22 C 1.47069 * 136.05779 * 179.97438 * 10 8 7 23 23 H 1.08997 * 109.47741 * 90.02156 * 1 2 3 24 24 H 1.08999 * 109.47453 * 210.02617 * 1 2 3 25 25 H 1.09002 * 109.46848 * 330.01837 * 1 2 3 26 26 H 1.07999 * 125.55795 * 179.97438 * 5 4 3 27 27 H 0.96997 * 119.99937 * 179.97438 * 7 6 5 28 28 H 1.09001 * 113.46495 * 321.93560 * 11 10 8 29 29 H 1.08998 * 113.46778 * 92.37281 * 11 10 8 30 30 H 0.96701 * 114.00212 * 86.39076 * 13 12 11 31 31 H 0.96991 * 120.00046 * 180.02562 * 17 16 14 32 32 H 1.09004 * 113.46712 * 267.62374 * 22 10 8 33 33 H 1.08995 * 113.47089 * 38.06377 * 22 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.3063 1.1228 0.0000 4 7 3.5259 0.7107 0.0056 5 6 3.5565 -0.6219 0.0088 6 6 2.2820 -1.0904 0.0056 7 7 1.8859 -2.4287 0.0079 8 6 2.8139 -3.4060 0.0131 9 8 3.9961 -3.1219 0.0154 10 7 2.4315 -4.6984 0.0159 11 6 1.1524 -5.4243 0.0212 12 6 1.8717 -6.5830 0.7199 13 8 1.8991 -6.4760 2.1446 14 6 1.4715 -7.9517 0.2329 15 1 2.0434 -8.4370 -0.5441 16 6 0.3752 -8.5846 0.7794 17 7 -0.3216 -7.9935 1.7253 18 14 -0.1206 -10.2816 0.1762 19 1 0.5698 -11.3164 0.9873 20 1 -1.5903 -10.4454 0.3119 21 1 0.2647 -10.4321 -1.2500 22 6 3.1096 -6.0034 0.0210 23 1 -0.3634 -0.0004 -1.0276 24 1 -0.3634 -0.8897 0.5142 25 1 -0.3633 0.8902 0.5136 26 1 4.4492 -1.2296 0.0131 27 1 0.9428 -2.6553 0.0056 28 1 0.3885 -4.9532 0.6398 29 1 0.7918 -5.6756 -0.9763 30 1 1.1179 -6.8419 2.5816 31 1 -1.0925 -8.4388 2.1100 32 1 3.2752 -6.4105 -0.9766 33 1 4.0069 -6.0240 0.6394 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330794750.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:36 Heat of formation + Delta-G solvation = 75.858619 kcal Electronic energy + Delta-G solvation = -20203.246401 eV Core-core repulsion = 16882.751511 eV Total energy + Delta-G solvation = -3320.494890 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.99161 -40.07175 -38.14354 -35.26116 -34.22724 -33.77434 -32.33299 -30.04647 -28.26675 -27.64235 -25.52093 -25.33752 -22.57126 -21.85255 -20.46347 -19.12967 -18.21677 -17.67396 -16.90692 -16.32722 -16.26397 -15.35330 -15.11687 -14.93253 -14.26885 -14.06815 -13.63887 -13.38110 -13.06976 -12.96305 -12.87153 -12.23505 -11.76937 -11.69900 -11.26913 -11.18424 -11.15794 -10.97082 -10.60264 -10.42257 -10.11368 -9.74537 -9.48936 -8.92767 -8.66271 -8.38604 -7.96129 -6.54703 -4.65452 1.37346 1.75982 2.73650 2.75237 3.06148 3.15019 3.17060 3.43294 3.91123 4.08073 4.33173 4.69284 4.83385 4.95411 5.08724 5.21383 5.37053 5.48001 5.68876 5.75406 5.91162 6.14012 6.21529 6.32065 6.45386 6.53396 6.75096 6.89261 7.15288 7.49287 7.64431 8.26961 8.34225 8.39270 8.63807 9.06811 9.33457 10.52225 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.038505 B = 0.004336 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.000513 B = 6455.355276 C = 6856.747596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.395 5.395 3 N -0.088 5.088 4 N -0.225 5.225 5 C -0.090 4.090 6 C 0.313 3.687 7 N -0.654 5.654 8 C 0.738 3.262 9 O -0.574 6.574 10 N -0.646 5.646 11 C 0.068 3.932 12 C 0.242 3.758 13 O -0.571 6.571 14 C -0.535 4.535 15 H 0.075 0.925 16 C 0.073 3.927 17 N -0.899 5.899 18 Si 0.910 3.090 19 H -0.276 1.276 20 H -0.283 1.283 21 H -0.270 1.270 22 C 0.131 3.869 23 H 0.083 0.917 24 H 0.086 0.914 25 H 0.100 0.900 26 H 0.210 0.790 27 H 0.409 0.591 28 H 0.062 0.938 29 H 0.084 0.916 30 H 0.395 0.605 31 H 0.275 0.725 32 H 0.089 0.911 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.800 6.890 -3.443 8.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.190 5.190 3 N -0.067 5.067 4 N -0.094 5.094 5 C -0.251 4.251 6 C 0.083 3.917 7 N -0.304 5.304 8 C 0.441 3.559 9 O -0.451 6.451 10 N -0.382 5.382 11 C -0.055 4.055 12 C 0.200 3.800 13 O -0.384 6.384 14 C -0.573 4.573 15 H 0.093 0.907 16 C -0.130 4.130 17 N -0.539 5.539 18 Si 0.737 3.263 19 H -0.201 1.201 20 H -0.209 1.209 21 H -0.195 1.195 22 C 0.008 3.992 23 H 0.102 0.898 24 H 0.105 0.895 25 H 0.119 0.881 26 H 0.226 0.774 27 H 0.244 0.756 28 H 0.081 0.919 29 H 0.103 0.897 30 H 0.251 0.749 31 H 0.085 0.915 32 H 0.107 0.893 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.455 9.009 -3.436 9.949 hybrid contribution -1.958 -2.285 -0.192 3.016 sum -4.413 6.723 -3.628 8.823 Atomic orbital electron populations 1.21993 0.73775 1.05185 1.04095 1.50477 1.08044 1.04308 1.56175 1.81996 0.93794 1.03836 1.27110 1.74183 1.12785 1.11802 1.10596 1.23540 0.96912 0.90082 1.14531 1.18506 0.91345 0.80634 1.01199 1.41891 1.10742 1.00903 1.76908 1.14886 0.83741 0.79115 0.78196 1.90804 1.15223 1.80793 1.58268 1.48802 1.13742 1.01689 1.74005 1.24285 0.86688 0.93083 1.01441 1.19471 0.89001 0.91099 0.80425 1.86062 1.49401 1.84674 1.18239 1.21408 1.12714 1.01253 1.21909 0.90704 1.25080 0.95122 0.98629 0.94122 1.69247 1.19376 1.38765 1.26521 0.86284 0.77714 0.82832 0.79466 1.20117 1.20893 1.19454 1.23348 0.98934 0.76495 1.00381 0.89843 0.89535 0.88124 0.77405 0.75561 0.91941 0.89745 0.74865 0.91461 0.89278 0.90994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.73 11.39 59.84 0.68 1.41 16 2 N -0.40 -5.36 4.09 -66.98 -0.27 -5.64 16 3 N -0.09 -1.43 13.81 60.35 0.83 -0.60 16 4 N -0.22 -3.96 12.32 30.23 0.37 -3.59 16 5 C -0.09 -1.57 10.76 -17.80 -0.19 -1.76 16 6 C 0.31 4.89 7.76 -152.27 -1.18 3.71 16 7 N -0.65 -9.85 5.43 -15.67 -0.09 -9.94 16 8 C 0.74 13.77 8.76 -86.92 -0.76 13.01 16 9 O -0.57 -12.09 14.28 5.29 0.08 -12.01 16 10 N -0.65 -12.19 3.69 -191.14 -0.71 -12.89 16 11 C 0.07 1.27 7.69 -8.63 -0.07 1.20 16 12 C 0.24 5.28 1.57 -91.39 -0.14 5.14 16 13 O -0.57 -13.68 13.53 -35.23 -0.48 -14.16 16 14 C -0.53 -12.31 8.70 -34.44 -0.30 -12.61 16 15 H 0.07 1.67 7.81 -52.48 -0.41 1.26 16 16 C 0.07 1.69 5.39 -17.82 -0.10 1.59 16 17 N -0.90 -21.16 11.01 55.43 0.61 -20.55 16 18 Si 0.91 18.16 29.54 -169.99 -5.02 13.14 16 19 H -0.28 -5.59 7.11 56.52 0.40 -5.18 16 20 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 21 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 22 C 0.13 2.56 8.04 -8.49 -0.07 2.50 16 23 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.09 0.55 7.65 -51.93 -0.40 0.15 16 25 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.21 3.83 5.83 -52.49 -0.31 3.52 16 27 H 0.41 5.00 7.87 -40.82 -0.32 4.68 16 28 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.08 1.48 8.10 -51.93 -0.42 1.06 16 30 H 0.39 9.60 6.33 45.56 0.29 9.89 16 31 H 0.27 6.18 8.31 -40.82 -0.34 5.84 16 32 H 0.09 1.57 8.10 -51.93 -0.42 1.15 16 33 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 LS Contribution 291.64 15.07 4.39 4.39 Total: -1.00 -28.15 291.64 -5.21 -33.37 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -2.81 Total: 14.27 kcal Atomic # 6 Polarization: 16.32 SS G_CDS: -2.13 Total: 14.20 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: 0.75 Total: -53.20 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.40 Total: -26.17 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.02 Total: 13.14 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.15 -5.21 -33.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330794750.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.224 kcal (2) G-P(sol) polarization free energy of solvation -28.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds