Wall clock time and date at job start Mon Mar 30 2020 00:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 N 1.40305 * 126.84757 * 2 1 4 4 N 1.28736 * 108.17977 * 179.73924 * 3 2 1 5 5 C 1.33293 * 109.98103 * 0.02562 * 4 3 2 6 6 C 1.35786 * 108.87191 * 359.97438 * 5 4 3 7 7 N 1.39570 * 126.67281 * 180.02562 * 6 5 4 8 8 C 1.34776 * 119.99450 * 359.96875 * 7 6 5 9 9 O 1.21585 * 120.00472 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99761 * 179.97438 * 8 7 6 11 11 C 1.47073 * 136.05935 * 359.63050 * 10 8 7 12 12 C 1.53238 * 88.08472 * 207.19967 * 11 10 8 13 13 O 1.42898 * 114.01579 * 87.71408 * 12 11 10 14 14 C 1.50689 * 114.50474 * 220.45477 * 12 11 10 15 15 H 1.08008 * 120.00083 * 93.85066 * 14 12 11 16 16 C 1.37879 * 120.00171 * 273.84461 * 14 12 11 17 17 N 1.31513 * 120.00024 * 0.02562 * 16 14 12 18 18 Si 1.86806 * 120.00161 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.46951 * 90.00138 * 18 16 14 20 20 H 1.48499 * 109.47139 * 210.00095 * 18 16 14 21 21 H 1.48501 * 109.46787 * 330.00296 * 18 16 14 22 22 C 1.47069 * 136.05779 * 179.97438 * 10 8 7 23 23 H 1.08997 * 109.47741 * 90.02156 * 1 2 3 24 24 H 1.08999 * 109.47453 * 210.02617 * 1 2 3 25 25 H 1.09002 * 109.46848 * 330.01837 * 1 2 3 26 26 H 1.07999 * 125.55795 * 179.97438 * 5 4 3 27 27 H 0.96997 * 119.99937 * 179.97438 * 7 6 5 28 28 H 1.09001 * 113.46495 * 321.93560 * 11 10 8 29 29 H 1.08998 * 113.46778 * 92.37281 * 11 10 8 30 30 H 0.96701 * 114.00212 * 86.39076 * 13 12 11 31 31 H 0.96991 * 120.00046 * 180.02562 * 17 16 14 32 32 H 1.09004 * 113.46712 * 267.62374 * 22 10 8 33 33 H 1.08995 * 113.47089 * 38.06377 * 22 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.3063 1.1228 0.0000 4 7 3.5259 0.7107 0.0056 5 6 3.5565 -0.6219 0.0088 6 6 2.2820 -1.0904 0.0056 7 7 1.8859 -2.4287 0.0079 8 6 2.8139 -3.4060 0.0131 9 8 3.9961 -3.1219 0.0154 10 7 2.4315 -4.6984 0.0159 11 6 1.1524 -5.4243 0.0212 12 6 1.8717 -6.5830 0.7199 13 8 1.8991 -6.4760 2.1446 14 6 1.4715 -7.9517 0.2329 15 1 2.0434 -8.4370 -0.5441 16 6 0.3752 -8.5846 0.7794 17 7 -0.3216 -7.9935 1.7253 18 14 -0.1206 -10.2816 0.1762 19 1 0.5698 -11.3164 0.9873 20 1 -1.5903 -10.4454 0.3119 21 1 0.2647 -10.4321 -1.2500 22 6 3.1096 -6.0034 0.0210 23 1 -0.3634 -0.0004 -1.0276 24 1 -0.3634 -0.8897 0.5142 25 1 -0.3633 0.8902 0.5136 26 1 4.4492 -1.2296 0.0131 27 1 0.9428 -2.6553 0.0056 28 1 0.3885 -4.9532 0.6398 29 1 0.7918 -5.6756 -0.9763 30 1 1.1179 -6.8419 2.5816 31 1 -1.0925 -8.4388 2.1100 32 1 3.2752 -6.4105 -0.9766 33 1 4.0069 -6.0240 0.6394 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330794750.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:35 Heat of formation + Delta-G solvation = 54.364053 kcal Electronic energy + Delta-G solvation = -20204.178476 eV Core-core repulsion = 16882.751511 eV Total energy + Delta-G solvation = -3321.426964 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.23236 -41.56048 -39.67728 -36.56380 -35.94147 -34.90887 -34.10442 -31.44194 -29.74886 -28.55698 -27.17184 -26.86110 -23.90722 -23.07086 -21.93309 -20.61535 -19.62487 -19.16044 -18.37723 -17.64064 -17.46533 -17.06076 -16.51859 -16.37436 -15.85975 -15.24468 -15.16201 -14.57453 -14.46669 -14.20875 -13.85063 -13.80573 -13.38796 -13.05016 -12.79060 -12.73717 -12.60647 -12.20151 -12.17716 -12.14384 -11.68066 -11.13433 -10.83414 -10.66509 -10.29099 -9.87298 -9.35349 -8.27119 -6.43074 0.15129 0.53326 1.39799 1.49211 1.53835 1.59091 1.62477 1.99921 2.41138 2.58530 2.97354 3.45494 3.67326 3.78085 3.88380 4.12879 4.28205 4.40012 4.46877 4.51758 4.64006 4.65358 4.68809 4.84156 4.90188 5.24187 5.27058 5.53632 5.74824 5.84439 5.93996 6.63614 6.80761 7.07086 7.20290 7.31499 7.50670 8.79013 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.038505 B = 0.004336 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.000513 B = 6455.355276 C = 6856.747596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.376 5.376 3 N -0.096 5.096 4 N -0.247 5.247 5 C -0.107 4.107 6 C 0.309 3.691 7 N -0.635 5.635 8 C 0.736 3.264 9 O -0.601 6.601 10 N -0.646 5.646 11 C 0.084 3.916 12 C 0.218 3.782 13 O -0.586 6.586 14 C -0.550 4.550 15 H 0.077 0.923 16 C 0.036 3.964 17 N -0.917 5.917 18 Si 0.966 3.034 19 H -0.282 1.282 20 H -0.283 1.283 21 H -0.265 1.265 22 C 0.132 3.868 23 H 0.107 0.893 24 H 0.108 0.892 25 H 0.119 0.881 26 H 0.194 0.806 27 H 0.425 0.575 28 H 0.068 0.932 29 H 0.101 0.899 30 H 0.390 0.610 31 H 0.276 0.724 32 H 0.110 0.890 33 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.500 6.928 -4.282 9.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.171 5.171 3 N -0.075 5.075 4 N -0.115 5.115 5 C -0.269 4.269 6 C 0.079 3.921 7 N -0.287 5.287 8 C 0.439 3.561 9 O -0.480 6.480 10 N -0.382 5.382 11 C -0.038 4.038 12 C 0.177 3.823 13 O -0.400 6.400 14 C -0.588 4.588 15 H 0.095 0.905 16 C -0.165 4.165 17 N -0.558 5.558 18 Si 0.792 3.208 19 H -0.208 1.208 20 H -0.208 1.208 21 H -0.189 1.189 22 C 0.009 3.991 23 H 0.126 0.874 24 H 0.126 0.874 25 H 0.137 0.863 26 H 0.211 0.789 27 H 0.263 0.737 28 H 0.087 0.913 29 H 0.119 0.881 30 H 0.246 0.754 31 H 0.086 0.914 32 H 0.128 0.872 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.202 9.079 -4.286 10.884 hybrid contribution -1.464 -2.268 0.092 2.701 sum -5.666 6.811 -4.194 9.803 Atomic orbital electron populations 1.22576 0.70294 1.07235 1.06346 1.50762 1.09693 1.02739 1.53947 1.81891 0.93774 1.04818 1.26992 1.74162 1.13685 1.11898 1.11774 1.23422 0.97550 0.90276 1.15638 1.18335 0.91283 0.81102 1.01410 1.41496 1.10975 1.00063 1.76199 1.14960 0.83809 0.79369 0.78012 1.90804 1.16674 1.81217 1.59344 1.48695 1.13620 1.01670 1.74198 1.24081 0.86347 0.91478 1.01893 1.19758 0.91052 0.91966 0.79573 1.86050 1.49372 1.84742 1.19798 1.21653 1.12872 1.02125 1.22120 0.90476 1.25688 0.95197 1.01271 0.94299 1.69303 1.19618 1.39740 1.27100 0.85415 0.77131 0.79216 0.79039 1.20777 1.20820 1.18884 1.23360 0.97710 0.77002 1.01014 0.87430 0.87390 0.86292 0.78903 0.73655 0.91325 0.88096 0.75437 0.91380 0.87197 0.92253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.92 11.39 127.77 1.46 2.38 16 2 N -0.38 -9.35 4.09 -365.84 -1.50 -10.84 16 3 N -0.10 -2.97 13.81 37.02 0.51 -2.46 16 4 N -0.25 -8.65 12.32 -58.27 -0.72 -9.37 16 5 C -0.11 -3.75 10.76 83.90 0.90 -2.84 16 6 C 0.31 9.24 7.76 130.90 1.02 10.25 16 7 N -0.64 -17.94 5.43 -321.75 -1.75 -19.68 16 8 C 0.74 26.68 8.76 179.06 1.57 28.25 16 9 O -0.60 -25.33 14.28 -3.98 -0.06 -25.39 16 10 N -0.65 -23.47 3.69 -877.38 -3.24 -26.71 16 11 C 0.08 2.99 7.69 83.09 0.64 3.63 16 12 C 0.22 9.32 1.57 -11.29 -0.02 9.30 16 13 O -0.59 -28.10 13.53 -148.98 -2.02 -30.12 16 14 C -0.55 -24.72 8.70 25.60 0.22 -24.49 16 15 H 0.08 3.34 7.81 -2.91 -0.02 3.32 16 16 C 0.04 1.62 5.39 84.66 0.46 2.08 16 17 N -0.92 -42.45 11.01 21.45 0.24 -42.21 16 18 Si 0.97 36.32 29.54 68.60 2.03 38.34 16 19 H -0.28 -10.80 7.11 99.48 0.71 -10.09 16 20 H -0.28 -10.51 7.11 99.48 0.71 -9.80 16 21 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 22 C 0.13 5.06 8.04 83.19 0.67 5.73 16 23 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.11 0.93 7.65 -2.39 -0.02 0.91 16 25 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.19 7.32 5.83 -2.91 -0.02 7.30 16 27 H 0.42 9.15 7.87 -92.71 -0.73 8.42 16 28 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.10 3.26 8.10 -2.39 -0.02 3.24 16 30 H 0.39 19.04 6.33 -74.06 -0.47 18.57 16 31 H 0.28 12.19 8.31 -92.72 -0.77 11.42 16 32 H 0.11 3.72 8.10 -2.38 -0.02 3.71 16 33 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -59.79 291.64 0.39 -59.40 By element: Atomic # 1 Polarization: 34.79 SS G_CDS: -0.02 Total: 34.76 kcal Atomic # 6 Polarization: 27.37 SS G_CDS: 6.91 Total: 34.28 kcal Atomic # 7 Polarization: -104.83 SS G_CDS: -6.45 Total: -111.28 kcal Atomic # 8 Polarization: -53.43 SS G_CDS: -2.07 Total: -55.51 kcal Atomic # 14 Polarization: 36.32 SS G_CDS: 2.03 Total: 38.34 kcal Total: -59.79 0.39 -59.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330794750.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.761 kcal (2) G-P(sol) polarization free energy of solvation -59.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds