Wall clock time and date at job start Mon Mar 30 2020 00:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34365 * 126.76403 * 2 1 4 4 N 1.30867 * 108.20216 * 179.76570 * 3 2 1 5 5 C 1.33636 * 109.77505 * 0.43293 * 4 3 2 6 6 N 1.39883 * 125.60019 * 179.81957 * 5 4 3 7 7 C 1.34776 * 120.00394 * 359.69659 * 6 5 4 8 8 O 1.21582 * 119.99535 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99796 * 179.97438 * 7 6 5 10 10 C 1.47585 * 134.48714 * 180.02562 * 9 7 6 11 11 C 1.53946 * 86.11303 * 155.35829 * 10 9 7 12 12 O 1.42897 * 113.74194 * 269.15036 * 11 10 9 13 13 C 1.50705 * 113.74193 * 137.95267 * 11 10 9 14 14 H 1.08000 * 119.99753 * 17.18899 * 13 11 10 15 15 C 1.37873 * 119.99893 * 197.19270 * 13 11 10 16 16 N 1.31512 * 119.99488 * 194.35249 * 15 13 11 17 17 Si 1.86797 * 120.00211 * 14.35029 * 15 13 11 18 18 H 1.48498 * 109.46923 * 180.02562 * 17 15 13 19 19 H 1.48497 * 109.47361 * 300.00177 * 17 15 13 20 20 H 1.48501 * 109.47273 * 60.00378 * 17 15 13 21 21 C 1.47807 * 134.46136 * 359.86830 * 9 7 6 22 22 N 1.31165 * 108.78963 * 359.56087 * 5 4 3 23 23 H 1.08995 * 109.47477 * 269.98783 * 1 2 3 24 24 H 1.08997 * 109.46973 * 29.98857 * 1 2 3 25 25 H 1.09003 * 109.46464 * 149.98718 * 1 2 3 26 26 H 1.07999 * 125.90400 * 0.05766 * 3 2 1 27 27 H 0.97002 * 119.99274 * 179.69691 * 6 5 4 28 28 H 1.08992 * 113.77064 * 41.05629 * 10 9 7 29 29 H 1.08997 * 113.76476 * 269.65826 * 10 9 7 30 30 H 0.96694 * 114.00247 * 174.14979 * 12 11 10 31 31 H 0.97001 * 120.00716 * 354.86282 * 16 15 13 32 32 H 1.08994 * 113.77033 * 90.37473 * 21 9 7 33 33 H 1.09004 * 113.83092 * 318.91824 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2692 1.0764 0.0000 4 7 3.5098 0.6598 0.0051 5 6 3.5381 -0.6762 -0.0011 6 7 4.6925 -1.4662 -0.0018 7 6 5.9079 -0.8837 -0.0022 8 8 6.0008 0.3286 -0.0014 9 7 7.0201 -1.6449 -0.0024 10 6 8.4682 -1.3603 -0.0023 11 6 8.6351 -2.7504 0.6377 12 8 8.6115 -2.7326 2.0664 13 6 9.7902 -3.5409 0.0791 14 1 10.5664 -3.0404 -0.4808 15 6 9.8559 -4.9029 0.2827 16 7 10.9781 -5.5487 0.0521 17 14 8.3512 -5.8308 0.8861 18 1 8.6810 -7.2721 1.0242 19 1 7.9323 -5.2909 2.2044 20 1 7.2443 -5.6672 -0.0902 21 6 7.2785 -3.1002 0.0001 22 7 2.3056 -1.1249 -0.0007 23 1 -0.3634 -0.0002 1.0276 24 1 -0.3633 0.8901 -0.5136 25 1 -0.3632 -0.8899 -0.5141 26 1 1.9475 2.1074 0.0009 27 1 4.6182 -2.4334 -0.0020 28 1 8.7542 -0.5377 0.6530 29 1 8.9003 -1.2811 -0.9999 30 1 8.6262 -3.6106 2.4710 31 1 11.7367 -5.0815 -0.3314 32 1 7.3602 -3.5337 -0.9966 33 1 6.6165 -3.6640 0.6576 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333883836.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:11 Heat of formation + Delta-G solvation = 83.854227 kcal Electronic energy + Delta-G solvation = -20106.671620 eV Core-core repulsion = 16786.523446 eV Total energy + Delta-G solvation = -3320.148174 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.10062 -39.92836 -37.98667 -34.95342 -34.20702 -33.24018 -32.62933 -31.00696 -28.78779 -26.98448 -25.76411 -24.84193 -22.49116 -21.77111 -20.11013 -19.14298 -18.05721 -17.76704 -17.30632 -16.22782 -16.11262 -15.66274 -15.18502 -14.94871 -14.31094 -14.17174 -13.65881 -13.51127 -13.38984 -13.00775 -12.70920 -12.24488 -12.03444 -11.83152 -11.24498 -10.85883 -10.81074 -10.43066 -10.21901 -9.90368 -9.84379 -9.53704 -9.43706 -9.03841 -8.66370 -8.46716 -7.96956 -6.74115 -4.47747 1.54445 1.92616 2.74890 2.89072 3.07746 3.15638 3.33364 3.77375 3.89190 4.17052 4.30217 4.48583 4.83143 4.83334 5.03105 5.08275 5.18812 5.46058 5.52116 5.89656 5.95444 6.13130 6.21743 6.25801 6.33770 6.61161 6.69437 6.85572 7.17894 7.54529 8.07542 8.12861 8.43065 8.56703 8.71083 8.91654 9.27901 10.62508 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.036744 B = 0.004611 C = 0.004252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.848344 B = 6071.411442 C = 6583.669905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.388 5.388 3 C 0.265 3.735 4 N -0.516 5.516 5 C 0.478 3.522 6 N -0.639 5.639 7 C 0.724 3.276 8 O -0.547 6.547 9 N -0.648 5.648 10 C 0.154 3.846 11 C 0.201 3.799 12 O -0.564 6.564 13 C -0.616 4.616 14 H 0.071 0.929 15 C 0.036 3.964 16 N -0.887 5.887 17 Si 1.040 2.960 18 H -0.278 1.278 19 H -0.279 1.279 20 H -0.273 1.273 21 C 0.053 3.947 22 N -0.353 5.353 23 H 0.077 0.923 24 H 0.092 0.908 25 H 0.089 0.911 26 H 0.221 0.779 27 H 0.417 0.583 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.367 0.633 31 H 0.274 0.726 32 H 0.096 0.904 33 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.438 6.792 -0.623 20.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.181 5.181 3 C -0.033 4.033 4 N -0.246 5.246 5 C 0.108 3.892 6 N -0.295 5.295 7 C 0.426 3.574 8 O -0.419 6.419 9 N -0.387 5.387 10 C 0.032 3.968 11 C 0.160 3.840 12 O -0.373 6.373 13 C -0.654 4.654 14 H 0.089 0.911 15 C -0.172 4.172 16 N -0.519 5.519 17 Si 0.868 3.132 18 H -0.204 1.204 19 H -0.206 1.206 20 H -0.199 1.199 21 C -0.070 4.070 22 N -0.190 5.190 23 H 0.095 0.905 24 H 0.110 0.890 25 H 0.108 0.892 26 H 0.238 0.762 27 H 0.254 0.746 28 H 0.094 0.906 29 H 0.110 0.890 30 H 0.216 0.784 31 H 0.085 0.915 32 H 0.114 0.886 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.928 6.420 -0.253 20.938 hybrid contribution 0.119 0.520 -0.492 0.726 sum -19.809 6.940 -0.745 21.002 Atomic orbital electron populations 1.21880 0.73803 1.04722 1.03606 1.50107 1.07591 1.03720 1.56700 1.26178 0.85083 0.95673 0.96322 1.70689 1.19466 1.09149 1.25260 1.19973 0.85725 0.87390 0.96146 1.41654 1.01202 1.09191 1.77451 1.15316 0.78767 0.84903 0.78417 1.90998 1.84329 1.10871 1.55752 1.49308 1.04963 1.08574 1.75849 1.23157 0.74799 0.98540 1.00272 1.20377 0.90958 0.92922 0.79740 1.86387 1.96823 1.33855 1.20190 1.22191 1.09068 0.94334 1.39844 0.91058 1.25826 1.01435 0.95043 0.94914 1.70801 1.02016 1.41211 1.37898 0.84141 0.75017 0.77332 0.76712 1.20372 1.20636 1.19917 1.24737 0.99482 0.80713 1.02032 1.78168 0.99336 1.06730 1.34745 0.90465 0.88986 0.89207 0.76230 0.74615 0.90602 0.89004 0.78391 0.91499 0.88648 0.91896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.54 11.53 59.85 0.69 1.23 16 2 N -0.39 -4.35 4.03 -69.45 -0.28 -4.63 16 3 C 0.27 3.10 12.65 -90.68 -1.15 1.95 16 4 N -0.52 -9.10 9.37 -14.92 -0.14 -9.24 16 5 C 0.48 8.51 8.81 -320.83 -2.83 5.69 16 6 N -0.64 -11.60 5.44 -17.22 -0.09 -11.70 16 7 C 0.72 15.36 8.73 -86.92 -0.76 14.60 16 8 O -0.55 -13.25 15.74 5.29 0.08 -13.17 16 9 N -0.65 -13.43 3.61 -183.90 -0.66 -14.10 16 10 C 0.15 3.28 8.23 -2.96 -0.02 3.26 16 11 C 0.20 4.55 1.07 -90.86 -0.10 4.46 16 12 O -0.56 -13.04 13.47 -35.23 -0.47 -13.52 16 13 C -0.62 -15.76 9.04 -34.44 -0.31 -16.07 16 14 H 0.07 1.96 8.06 -52.49 -0.42 1.53 16 15 C 0.04 0.93 5.44 -17.82 -0.10 0.83 16 16 N -0.89 -24.91 13.70 55.43 0.76 -24.15 16 17 Si 1.04 21.85 24.55 -169.99 -4.17 17.68 16 18 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 19 H -0.28 -5.33 5.81 56.52 0.33 -5.00 16 20 H -0.27 -5.19 6.48 56.52 0.37 -4.82 16 21 C 0.05 1.06 5.22 -2.85 -0.01 1.05 16 22 N -0.35 -5.43 12.72 30.04 0.38 -5.05 16 23 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 24 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 25 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.22 1.32 8.06 -52.49 -0.42 0.90 16 27 H 0.42 6.51 8.43 -40.82 -0.34 6.17 16 28 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 29 H 0.09 1.83 8.09 -51.93 -0.42 1.41 16 30 H 0.37 7.81 6.07 45.56 0.28 8.09 16 31 H 0.27 7.70 8.73 -40.82 -0.36 7.35 16 32 H 0.10 1.84 7.97 -51.93 -0.41 1.42 16 33 H 0.06 1.15 6.87 -51.93 -0.36 0.79 16 LS Contribution 287.58 15.07 4.33 4.33 Total: -1.00 -35.52 287.58 -7.91 -43.43 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -3.06 Total: 13.11 kcal Atomic # 6 Polarization: 21.58 SS G_CDS: -4.59 Total: 17.00 kcal Atomic # 7 Polarization: -68.82 SS G_CDS: -0.04 Total: -68.86 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -0.39 Total: -26.68 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.17 Total: 17.68 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -35.52 -7.91 -43.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333883836.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.280 kcal (2) G-P(sol) polarization free energy of solvation -35.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds