Wall clock time and date at job start Mon Mar 30 2020 00:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47046 * 2 1 4 4 C 1.35915 * 116.99609 * 179.97438 * 3 2 1 5 5 C 1.39139 * 120.46688 * 179.97438 * 4 3 2 6 6 C 1.38537 * 118.37116 * 180.02562 * 5 4 3 7 7 C 1.38256 * 119.22181 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.55703 * 180.02562 * 7 6 5 9 9 S 1.81400 * 109.47394 * 90.00093 * 8 7 6 10 10 C 1.81397 * 102.99911 * 179.97438 * 9 8 7 11 11 C 1.53003 * 109.47163 * 179.97438 * 10 9 8 12 12 C 1.50702 * 109.47130 * 179.97438 * 11 10 9 13 13 H 1.07993 * 120.00386 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99510 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00505 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99741 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47005 * 60.00048 * 16 14 12 18 18 H 1.48498 * 109.47134 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47066 * 299.99998 * 16 14 12 20 20 N 1.31849 * 120.88394 * 0.02562 * 7 6 5 21 21 C 1.31840 * 121.78103 * 359.70734 * 20 7 6 22 22 H 1.08998 * 109.47592 * 300.00144 * 1 2 3 23 23 H 1.09007 * 109.46935 * 60.00317 * 1 2 3 24 24 H 1.09008 * 109.47419 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47090 * 239.99784 * 2 1 3 26 26 H 1.08999 * 109.47084 * 119.99957 * 2 1 3 27 27 H 1.07999 * 120.81739 * 0.02850 * 5 4 3 28 28 H 1.08004 * 120.39205 * 179.97438 * 6 5 4 29 29 H 1.09004 * 109.47022 * 210.00449 * 8 7 6 30 30 H 1.09003 * 109.47121 * 329.99836 * 8 7 6 31 31 H 1.09004 * 109.47436 * 300.00005 * 10 9 8 32 32 H 1.09000 * 109.47334 * 60.00103 * 10 9 8 33 33 H 1.09004 * 109.47111 * 300.00402 * 11 10 9 34 34 H 1.09000 * 109.46749 * 59.99943 * 11 10 9 35 35 H 0.96993 * 120.00159 * 179.97438 * 15 14 12 36 36 H 1.08004 * 119.65848 * 180.29012 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3537 1.5253 0.0005 5 6 3.8961 2.8066 0.0000 6 6 5.2752 2.9377 0.0001 7 6 6.0613 1.8004 0.0012 8 6 7.5624 1.9342 0.0018 9 16 8.1639 1.9889 1.7123 10 6 9.9594 2.1481 1.5085 11 6 10.6255 2.2089 2.8846 12 6 12.1171 2.3405 2.7153 13 1 12.5471 2.3775 1.7253 14 6 12.9329 2.4147 3.8244 15 7 12.4093 2.3702 5.0300 16 14 14.7818 2.5785 3.6145 17 1 15.0863 3.8217 2.8614 18 1 15.4283 2.6375 4.9501 19 1 15.3008 1.4061 2.8653 20 7 5.5153 0.6003 0.0016 21 6 4.2077 0.4324 0.0068 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.2576 3.6777 -0.0003 28 1 5.7310 3.9169 -0.0007 29 1 8.0036 1.0797 -0.5114 30 1 7.8455 2.8527 -0.5125 31 1 10.3403 1.2880 0.9578 32 1 10.1829 3.0610 0.9564 33 1 10.2445 3.0693 3.4349 34 1 10.4019 1.2963 3.4370 35 1 12.9832 2.4220 5.8102 36 1 3.7971 -0.5666 0.0118 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338920067.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:37 Heat of formation + Delta-G solvation = -22.462744 kcal Electronic energy + Delta-G solvation = -16632.798397 eV Core-core repulsion = 13822.040437 eV Total energy + Delta-G solvation = -2810.757961 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.82787 -38.56843 -33.65837 -33.04472 -32.44356 -31.29727 -30.83379 -27.25280 -25.19643 -24.83679 -22.67488 -22.20356 -20.96378 -18.55775 -17.01329 -16.53182 -16.50960 -16.22812 -15.46984 -14.72166 -14.49487 -14.27414 -14.08034 -13.82308 -13.42491 -13.28976 -13.00364 -12.63952 -12.59485 -12.39638 -11.96247 -11.77567 -11.48609 -11.23373 -10.99286 -10.61840 -10.16355 -9.86399 -9.67239 -9.59129 -9.52268 -9.03761 -8.42018 -8.39887 -7.09415 -6.03794 -4.08478 0.87180 1.09146 2.28616 2.78922 3.24611 3.31938 3.36571 3.39122 3.75035 4.16304 4.42655 4.43483 4.50924 4.51242 4.63655 4.82801 4.84978 5.05457 5.29867 5.31473 5.34494 5.36768 5.39850 5.60608 5.65702 5.82796 5.94957 6.02853 6.21190 6.33430 6.75728 6.97065 7.58941 7.68045 7.86002 7.92514 8.29598 8.96359 9.55152 11.06960 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.058477 B = 0.002712 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.705660 B =10323.859162 C =10448.915103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.050 3.950 3 O -0.312 6.312 4 C 0.074 3.926 5 C -0.107 4.107 6 C -0.114 4.114 7 C 0.116 3.884 8 C -0.042 4.042 9 S -0.268 6.268 10 C -0.061 4.061 11 C 0.038 3.962 12 C -0.521 4.521 13 H 0.057 0.943 14 C 0.059 3.941 15 N -0.891 5.891 16 Si 0.897 3.103 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.276 1.276 20 N -0.436 5.436 21 C 0.022 3.978 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.079 0.921 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.143 0.857 28 H 0.146 0.854 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.026 0.974 34 H 0.026 0.974 35 H 0.263 0.737 36 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.774 -2.176 -12.399 25.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.025 4.025 3 O -0.225 6.225 4 C 0.026 3.974 5 C -0.134 4.134 6 C -0.135 4.135 7 C -0.023 4.023 8 C -0.190 4.190 9 S -0.040 6.040 10 C -0.209 4.209 11 C -0.001 4.001 12 C -0.561 4.561 13 H 0.075 0.925 14 C -0.143 4.143 15 N -0.529 5.529 16 Si 0.725 3.275 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.202 1.202 20 N -0.146 5.146 21 C -0.137 4.137 22 H 0.086 0.914 23 H 0.085 0.915 24 H 0.098 0.902 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.161 0.839 28 H 0.163 0.837 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.045 0.955 34 H 0.045 0.955 35 H 0.073 0.927 36 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -21.944 -2.822 -11.285 24.837 hybrid contribution 1.220 0.608 -1.103 1.754 sum -20.724 -2.213 -12.389 24.246 Atomic orbital electron populations 1.21773 0.92497 1.03010 1.03567 1.22853 0.96133 0.81743 1.01766 1.86065 1.18240 1.29563 1.88607 1.20024 0.83532 0.95322 0.98560 1.20893 0.94910 0.95452 1.02121 1.21844 0.92779 1.00369 0.98503 1.20391 0.94936 0.88349 0.98578 1.22062 0.92162 1.05534 0.99226 1.87160 1.11112 1.97328 1.08352 1.23725 0.88350 1.03094 1.05694 1.18898 0.94391 0.98527 0.88268 1.21060 0.90959 1.51348 0.92746 0.92471 1.25020 0.98983 0.95113 0.95193 1.69963 1.35539 1.49825 0.97610 0.86574 0.84980 0.78704 0.77249 1.20156 1.21193 1.20151 1.67301 1.12139 1.25935 1.09222 1.22856 0.89101 0.98267 1.03427 0.91415 0.91521 0.90197 0.91783 0.91638 0.83900 0.83664 0.88712 0.88922 0.91249 0.91295 0.95541 0.95515 0.92731 0.82571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 10.28 37.16 0.38 -0.39 16 2 C 0.05 0.35 5.47 37.16 0.20 0.55 16 3 O -0.31 -3.17 10.15 -19.47 -0.20 -3.37 16 4 C 0.07 0.85 6.71 -39.08 -0.26 0.59 16 5 C -0.11 -1.19 10.13 -39.14 -0.40 -1.59 16 6 C -0.11 -1.36 9.73 -39.46 -0.38 -1.75 16 7 C 0.12 1.67 6.04 -82.58 -0.50 1.17 16 8 C -0.04 -0.62 6.22 36.01 0.22 -0.39 16 9 S -0.27 -5.16 21.72 -107.50 -2.33 -7.49 16 10 C -0.06 -1.29 5.88 37.16 0.22 -1.07 16 11 C 0.04 1.00 4.98 -27.88 -0.14 0.86 16 12 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16 13 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -26.90 13.29 55.43 0.74 -26.17 16 16 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 20 N -0.44 -6.49 10.27 -9.35 -0.10 -6.59 16 21 C 0.02 0.27 10.22 -17.38 -0.18 0.10 16 22 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 23 H 0.07 0.34 8.14 -51.92 -0.42 -0.08 16 24 H 0.08 0.27 8.14 -51.92 -0.42 -0.16 16 25 H 0.06 0.38 7.69 -51.93 -0.40 -0.02 16 26 H 0.07 0.42 7.67 -51.93 -0.40 0.02 16 27 H 0.14 1.25 8.06 -52.49 -0.42 0.82 16 28 H 0.15 1.44 8.06 -52.48 -0.42 1.02 16 29 H 0.09 1.39 8.14 -51.92 -0.42 0.97 16 30 H 0.09 1.17 8.08 -51.92 -0.42 0.75 16 31 H 0.07 1.42 8.14 -51.92 -0.42 1.00 16 32 H 0.07 1.37 8.14 -51.92 -0.42 0.95 16 33 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.16 1.48 6.32 -52.48 -0.33 1.15 16 LS Contribution 323.57 15.07 4.88 4.88 Total: -1.00 -32.25 323.57 -8.60 -40.84 By element: Atomic # 1 Polarization: 2.04 SS G_CDS: -5.32 Total: -3.28 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: -1.24 Total: -15.35 kcal Atomic # 7 Polarization: -33.39 SS G_CDS: 0.64 Total: -32.75 kcal Atomic # 8 Polarization: -3.17 SS G_CDS: -0.20 Total: -3.37 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -5.16 SS G_CDS: -2.33 Total: -7.49 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.25 -8.60 -40.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338920067.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.381 kcal (2) G-P(sol) polarization free energy of solvation -32.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds