Wall clock time and date at job start Mon Mar 30 2020 00:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47046 * 2 1 4 4 C 1.35915 * 116.99609 * 179.97438 * 3 2 1 5 5 C 1.39139 * 120.46688 * 179.97438 * 4 3 2 6 6 C 1.38537 * 118.37116 * 180.02562 * 5 4 3 7 7 C 1.38256 * 119.22181 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.55703 * 180.02562 * 7 6 5 9 9 S 1.81400 * 109.47394 * 90.00093 * 8 7 6 10 10 C 1.81397 * 102.99911 * 179.97438 * 9 8 7 11 11 C 1.53003 * 109.47163 * 179.97438 * 10 9 8 12 12 C 1.50702 * 109.47130 * 179.97438 * 11 10 9 13 13 H 1.07993 * 120.00386 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99510 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00505 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99741 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47005 * 60.00048 * 16 14 12 18 18 H 1.48498 * 109.47134 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47066 * 299.99998 * 16 14 12 20 20 N 1.31849 * 120.88394 * 0.02562 * 7 6 5 21 21 C 1.31840 * 121.78103 * 359.70734 * 20 7 6 22 22 H 1.08998 * 109.47592 * 300.00144 * 1 2 3 23 23 H 1.09007 * 109.46935 * 60.00317 * 1 2 3 24 24 H 1.09008 * 109.47419 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47090 * 239.99784 * 2 1 3 26 26 H 1.08999 * 109.47084 * 119.99957 * 2 1 3 27 27 H 1.07999 * 120.81739 * 0.02850 * 5 4 3 28 28 H 1.08004 * 120.39205 * 179.97438 * 6 5 4 29 29 H 1.09004 * 109.47022 * 210.00449 * 8 7 6 30 30 H 1.09003 * 109.47121 * 329.99836 * 8 7 6 31 31 H 1.09004 * 109.47436 * 300.00005 * 10 9 8 32 32 H 1.09000 * 109.47334 * 60.00103 * 10 9 8 33 33 H 1.09004 * 109.47111 * 300.00402 * 11 10 9 34 34 H 1.09000 * 109.46749 * 59.99943 * 11 10 9 35 35 H 0.96993 * 120.00159 * 179.97438 * 15 14 12 36 36 H 1.08004 * 119.65848 * 180.29012 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3537 1.5253 0.0005 5 6 3.8961 2.8066 0.0000 6 6 5.2752 2.9377 0.0001 7 6 6.0613 1.8004 0.0012 8 6 7.5624 1.9342 0.0018 9 16 8.1639 1.9889 1.7123 10 6 9.9594 2.1481 1.5085 11 6 10.6255 2.2089 2.8846 12 6 12.1171 2.3405 2.7153 13 1 12.5471 2.3775 1.7253 14 6 12.9329 2.4147 3.8244 15 7 12.4093 2.3702 5.0300 16 14 14.7818 2.5785 3.6145 17 1 15.0863 3.8217 2.8614 18 1 15.4283 2.6375 4.9501 19 1 15.3008 1.4061 2.8653 20 7 5.5153 0.6003 0.0016 21 6 4.2077 0.4324 0.0068 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.2576 3.6777 -0.0003 28 1 5.7310 3.9169 -0.0007 29 1 8.0036 1.0797 -0.5114 30 1 7.8455 2.8527 -0.5125 31 1 10.3403 1.2880 0.9578 32 1 10.1829 3.0610 0.9564 33 1 10.2445 3.0693 3.4349 34 1 10.4019 1.2963 3.4370 35 1 12.9832 2.4220 5.8102 36 1 3.7971 -0.5666 0.0118 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338920067.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:36 Heat of formation + Delta-G solvation = -41.494320 kcal Electronic energy + Delta-G solvation = -16633.623668 eV Core-core repulsion = 13822.040437 eV Total energy + Delta-G solvation = -2811.583232 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.70792 -39.38592 -35.76565 -33.82647 -33.42409 -32.89465 -31.97234 -28.31851 -27.22872 -25.57111 -23.68618 -23.14684 -22.68199 -19.33135 -18.66184 -17.90925 -17.44897 -17.19154 -16.67497 -16.50990 -15.72644 -15.52505 -15.33493 -14.88239 -14.62145 -14.24431 -14.06189 -13.75395 -13.63319 -13.51187 -13.25051 -13.09971 -12.88052 -12.48618 -12.40392 -12.14020 -11.86699 -11.68580 -11.34444 -10.86570 -10.73541 -10.59328 -10.48891 -9.37007 -8.62982 -8.21991 -6.35870 -0.14387 0.17335 0.96079 1.41926 1.45490 1.53552 1.75515 2.08346 2.41506 2.78428 3.10971 3.20470 3.58548 3.62959 3.87754 4.04057 4.11780 4.28337 4.29137 4.32924 4.37683 4.40192 4.46766 4.63295 4.81008 4.88713 4.91100 4.94132 5.04373 5.24257 5.39041 5.45361 5.50473 5.74595 6.11661 6.19749 6.78439 6.89841 7.33517 8.89620 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.058477 B = 0.002712 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.705660 B =10323.859162 C =10448.915103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.039 3.961 3 O -0.319 6.319 4 C 0.079 3.921 5 C -0.111 4.111 6 C -0.110 4.110 7 C 0.088 3.912 8 C -0.021 4.021 9 S -0.306 6.306 10 C -0.048 4.048 11 C 0.044 3.956 12 C -0.542 4.542 13 H 0.069 0.931 14 C -0.001 4.001 15 N -0.933 5.933 16 Si 0.974 3.026 17 H -0.263 1.263 18 H -0.284 1.284 19 H -0.265 1.265 20 N -0.465 5.465 21 C 0.012 3.988 22 H 0.062 0.938 23 H 0.066 0.934 24 H 0.100 0.900 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.168 0.832 28 H 0.166 0.834 29 H 0.094 0.906 30 H 0.118 0.882 31 H 0.075 0.925 32 H 0.083 0.917 33 H -0.003 1.003 34 H -0.007 1.007 35 H 0.265 0.735 36 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.367 -1.893 -14.091 26.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.035 4.035 3 O -0.231 6.231 4 C 0.030 3.970 5 C -0.138 4.138 6 C -0.131 4.131 7 C -0.050 4.050 8 C -0.169 4.169 9 S -0.077 6.077 10 C -0.196 4.196 11 C 0.006 3.994 12 C -0.581 4.581 13 H 0.087 0.913 14 C -0.199 4.199 15 N -0.572 5.572 16 Si 0.797 3.203 17 H -0.188 1.188 18 H -0.209 1.209 19 H -0.190 1.190 20 N -0.176 5.176 21 C -0.147 4.147 22 H 0.082 0.918 23 H 0.085 0.915 24 H 0.119 0.881 25 H 0.094 0.906 26 H 0.088 0.912 27 H 0.185 0.815 28 H 0.183 0.817 29 H 0.113 0.887 30 H 0.137 0.863 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.016 0.984 34 H 0.011 0.989 35 H 0.074 0.926 36 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -22.540 -2.540 -12.990 26.139 hybrid contribution 1.169 0.467 -0.609 1.399 sum -21.371 -2.073 -13.599 25.416 Atomic orbital electron populations 1.21803 0.91060 1.04312 1.03348 1.23172 0.97300 0.80454 1.02610 1.86079 1.17317 1.31607 1.88146 1.20148 0.84152 0.95382 0.97294 1.21228 0.94914 0.96287 1.01322 1.22059 0.93140 1.00527 0.97386 1.20389 0.94599 0.89153 1.00887 1.22068 0.92766 1.06878 0.95218 1.87224 1.09512 1.97464 1.13546 1.23353 0.89774 1.04053 1.02422 1.18674 0.94639 0.95470 0.90620 1.21527 0.92075 1.51094 0.93439 0.91265 1.26061 1.04653 0.94472 0.94725 1.70114 1.37628 1.50862 0.98620 0.85375 0.78125 0.79363 0.77421 1.18777 1.20934 1.19008 1.67235 1.13544 1.26645 1.10143 1.23186 0.88476 0.99641 1.03356 0.91847 0.91507 0.88148 0.90579 0.91154 0.81494 0.81685 0.88747 0.86340 0.90642 0.89842 0.98433 0.98889 0.92587 0.80583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 10.28 71.98 0.74 -0.47 16 2 C 0.04 0.47 5.47 71.98 0.39 0.86 16 3 O -0.32 -5.87 10.15 -92.59 -0.94 -6.81 16 4 C 0.08 1.68 6.71 22.60 0.15 1.83 16 5 C -0.11 -2.24 10.13 22.56 0.23 -2.01 16 6 C -0.11 -2.44 9.73 22.35 0.22 -2.22 16 7 C 0.09 2.43 6.04 42.56 0.26 2.68 16 8 C -0.02 -0.61 6.22 71.24 0.44 -0.17 16 9 S -0.31 -11.84 21.72 -56.49 -1.23 -13.07 16 10 C -0.05 -2.05 5.88 71.98 0.42 -1.63 16 11 C 0.04 2.43 4.98 29.85 0.15 2.58 16 12 C -0.54 -30.91 9.11 25.60 0.23 -30.68 16 13 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 14 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 15 N -0.93 -57.67 13.29 21.45 0.28 -57.38 16 16 Si 0.97 44.09 29.54 68.60 2.03 46.12 16 17 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 18 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 19 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 20 N -0.47 -13.50 10.27 -183.49 -1.88 -15.39 16 21 C 0.01 0.29 10.22 84.80 0.87 1.16 16 22 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 23 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 24 H 0.10 0.42 8.14 -2.38 -0.02 0.40 16 25 H 0.08 0.73 7.69 -2.39 -0.02 0.72 16 26 H 0.07 0.78 7.67 -2.39 -0.02 0.76 16 27 H 0.17 2.45 8.06 -2.91 -0.02 2.43 16 28 H 0.17 2.88 8.06 -2.91 -0.02 2.85 16 29 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 30 H 0.12 2.73 8.08 -2.39 -0.02 2.71 16 31 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 32 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 33 H 0.00 -0.16 8.14 -2.38 -0.02 -0.18 16 34 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 35 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 36 H 0.18 3.10 6.32 -2.91 -0.02 3.08 16 Total: -1.00 -70.71 323.57 3.88 -66.83 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: 1.05 Total: 7.35 kcal Atomic # 6 Polarization: -32.21 SS G_CDS: 4.57 Total: -27.65 kcal Atomic # 7 Polarization: -71.17 SS G_CDS: -1.60 Total: -72.77 kcal Atomic # 8 Polarization: -5.87 SS G_CDS: -0.94 Total: -6.81 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 16 Polarization: -11.84 SS G_CDS: -1.23 Total: -13.07 kcal Total: -70.71 3.88 -66.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338920067.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.339 kcal (2) G-P(sol) polarization free energy of solvation -70.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds