Wall clock time and date at job start Mon Mar 30 2020 00:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34768 * 119.99916 * 2 1 4 4 O 1.21588 * 120.00251 * 359.97438 * 3 2 1 5 5 N 1.34778 * 120.00222 * 179.97438 * 3 2 1 6 6 C 1.46496 * 120.00594 * 179.97438 * 5 3 2 7 7 C 1.50699 * 109.47331 * 180.02562 * 6 5 3 8 8 O 1.21304 * 120.00152 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99798 * 180.27531 * 7 6 5 10 10 C 1.40595 * 119.99764 * 179.72414 * 9 7 6 11 11 C 1.40646 * 126.08311 * 359.69131 * 10 9 7 12 12 N 1.30914 * 108.38784 * 179.87895 * 11 10 9 13 13 N 1.40065 * 108.40439 * 0.38138 * 12 11 10 14 14 C 1.37327 * 126.06489 * 179.73676 * 13 12 11 15 15 H 1.08003 * 119.99416 * 174.15969 * 14 13 12 16 16 C 1.38979 * 120.00372 * 354.16004 * 14 13 12 17 17 N 1.31300 * 119.99795 * 5.93274 * 16 14 13 18 18 Si 1.86793 * 120.00339 * 185.93961 * 16 14 13 19 19 H 1.48508 * 109.47464 * 94.97550 * 18 16 14 20 20 H 1.48497 * 109.47452 * 214.97875 * 18 16 14 21 21 H 1.48508 * 109.47127 * 334.97858 * 18 16 14 22 22 C 1.35686 * 126.08204 * 180.02562 * 10 9 7 23 23 H 1.08996 * 109.47360 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47256 * 300.00653 * 1 2 3 25 25 H 1.09002 * 109.47010 * 59.99980 * 1 2 3 26 26 H 0.96999 * 119.99812 * 179.97438 * 2 1 3 27 27 H 0.96999 * 119.99506 * 0.02562 * 5 3 2 28 28 H 1.09004 * 109.47011 * 60.00232 * 6 5 3 29 29 H 1.08998 * 109.47326 * 300.00855 * 6 5 3 30 30 H 0.97001 * 120.00137 * 359.73317 * 9 7 6 31 31 H 1.07998 * 125.80732 * 0.02562 * 11 10 9 32 32 H 0.96997 * 119.99732 * 180.02562 * 17 16 14 33 33 H 1.07995 * 126.24184 * 359.92839 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5310 2.2201 -0.0005 5 7 3.4866 1.1672 0.0005 6 6 4.2192 2.4359 0.0000 7 6 5.7008 2.1605 0.0001 8 8 6.1052 1.0168 0.0001 9 7 6.5766 3.1849 0.0052 10 6 7.9588 2.9279 0.0112 11 6 8.5655 1.6591 0.0186 12 7 9.8644 1.8223 0.0199 13 7 10.1374 3.1961 0.0223 14 6 11.3838 3.7727 0.0293 15 1 11.4836 4.8439 -0.0647 16 6 12.5165 2.9777 0.1573 17 7 12.4042 1.6695 0.1543 18 14 14.1988 3.7702 0.3337 19 1 14.5459 3.8799 1.7735 20 1 15.2140 2.9360 -0.3580 21 1 14.1739 5.1250 -0.2740 22 6 8.9449 3.8600 0.0172 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.9500 -0.8401 0.0004 27 1 3.9716 0.3272 0.0005 28 1 3.9556 3.0080 0.8895 29 1 3.9561 3.0069 -0.8904 30 1 6.2533 4.0994 0.0049 31 1 8.0478 0.7112 0.0203 32 1 13.1948 1.1147 0.2440 33 1 8.8106 4.9316 0.0172 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341255939.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:59 Heat of formation + Delta-G solvation = 24.595133 kcal Electronic energy + Delta-G solvation = -19223.885855 eV Core-core repulsion = 15901.168013 eV Total energy + Delta-G solvation = -3322.717842 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.30802 -39.74732 -38.59637 -34.85681 -34.53354 -34.12701 -33.21037 -30.33005 -29.01996 -27.48345 -25.84071 -24.61543 -21.31026 -20.91913 -20.44656 -19.50971 -18.88258 -17.46766 -16.83844 -15.99317 -15.97669 -15.47146 -15.26005 -14.94386 -14.46559 -14.35317 -13.82281 -13.59501 -13.15099 -13.04490 -12.85806 -12.44809 -12.37463 -11.71643 -11.48038 -11.29719 -10.97247 -10.54949 -10.40080 -10.24467 -9.47679 -9.37106 -9.21483 -8.98541 -8.85218 -8.10181 -6.76222 -6.59579 -4.26681 2.50835 2.69705 2.98513 3.03522 3.08835 3.10369 3.53915 3.63224 3.84755 4.21286 4.36563 4.65388 4.96253 4.98059 5.10103 5.30672 5.35419 5.38912 5.56400 6.19972 6.24884 6.28029 6.41071 6.76004 6.84124 6.91168 7.04117 7.19174 7.82037 7.88076 8.07771 8.22362 8.47255 8.54707 8.74363 9.33909 9.62516 10.36725 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.079432 B = 0.003056 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 352.419991 B = 9160.464051 C = 9487.592915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.751 5.751 3 C 0.706 3.294 4 O -0.596 6.596 5 N -0.731 5.731 6 C 0.125 3.875 7 C 0.492 3.508 8 O -0.537 6.537 9 N -0.616 5.616 10 C -0.063 4.063 11 C -0.032 4.032 12 N -0.262 5.262 13 N -0.142 5.142 14 C -0.324 4.324 15 H 0.117 0.883 16 C 0.046 3.954 17 N -0.769 5.769 18 Si 0.935 3.065 19 H -0.271 1.271 20 H -0.276 1.276 21 H -0.263 1.263 22 C -0.081 4.081 23 H 0.074 0.926 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.400 0.600 27 H 0.409 0.591 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.401 0.599 31 H 0.176 0.824 32 H 0.275 0.725 33 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.069 -0.377 -0.017 15.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.407 5.407 3 C 0.405 3.595 4 O -0.474 6.474 5 N -0.390 5.390 6 C -0.004 4.004 7 C 0.278 3.722 8 O -0.415 6.415 9 N -0.258 5.258 10 C -0.169 4.169 11 C -0.207 4.207 12 N -0.093 5.093 13 N 0.091 4.909 14 C -0.456 4.456 15 H 0.135 0.865 16 C -0.171 4.171 17 N -0.396 5.396 18 Si 0.759 3.241 19 H -0.196 1.196 20 H -0.201 1.201 21 H -0.188 1.188 22 C -0.232 4.232 23 H 0.093 0.907 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.233 0.767 27 H 0.247 0.753 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.234 0.766 31 H 0.193 0.807 32 H 0.086 0.914 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -14.063 -1.011 -0.010 14.099 hybrid contribution 0.187 0.544 0.076 0.580 sum -13.875 -0.467 0.066 13.883 Atomic orbital electron populations 1.21380 0.78131 1.01903 1.02230 1.44873 1.07725 1.07245 1.80860 1.15836 0.81464 0.84336 0.77862 1.90921 1.68036 1.30269 1.58211 1.44729 1.04504 1.09969 1.79764 1.20805 0.88644 0.86499 1.04429 1.20223 0.87671 0.85606 0.78727 1.90583 1.79000 1.21317 1.50617 1.42356 1.04334 1.08501 1.70639 1.17254 0.81164 0.94238 1.24205 1.24098 0.91623 0.97117 1.07885 1.78256 1.12734 0.92574 1.25699 1.44558 1.03683 1.03683 1.39007 1.19893 0.79450 0.93397 1.52840 0.86544 1.25652 1.00697 0.95296 0.95451 1.70223 1.30726 1.03599 1.35026 0.85804 0.80000 0.79318 0.78986 1.19620 1.20093 1.18755 1.21284 0.85655 0.96594 1.19686 0.90703 0.92415 0.92407 0.76710 0.75336 0.88754 0.88771 0.76602 0.80735 0.91442 0.83563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.80 10.70 59.85 0.64 1.44 16 2 N -0.75 -6.90 5.72 -72.07 -0.41 -7.31 16 3 C 0.71 9.12 8.57 -86.92 -0.74 8.38 16 4 O -0.60 -9.75 16.34 5.29 0.09 -9.66 16 5 N -0.73 -9.04 5.53 -66.42 -0.37 -9.41 16 6 C 0.12 1.56 6.15 -5.20 -0.03 1.52 16 7 C 0.49 7.95 7.87 -10.99 -0.09 7.86 16 8 O -0.54 -10.45 12.82 5.54 0.07 -10.38 16 9 N -0.62 -10.31 5.47 -10.00 -0.05 -10.37 16 10 C -0.06 -1.41 6.90 -83.84 -0.58 -1.99 16 11 C -0.03 -0.81 10.85 -17.03 -0.18 -1.00 16 12 N -0.26 -7.51 10.42 30.80 0.32 -7.19 16 13 N -0.14 -3.84 3.74 -11.41 -0.04 -3.89 16 14 C -0.32 -8.46 10.24 -14.82 -0.15 -8.62 16 15 H 0.12 2.72 7.84 -52.48 -0.41 2.31 16 16 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 17 N -0.77 -21.30 11.84 55.49 0.66 -20.64 16 18 Si 0.94 18.73 29.55 -169.99 -5.02 13.70 16 19 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 20 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 21 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 22 C -0.08 -1.87 11.49 -16.39 -0.19 -2.06 16 23 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.40 2.63 8.84 -40.82 -0.36 2.27 16 27 H 0.41 4.86 7.45 -40.82 -0.30 4.55 16 28 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.40 5.06 8.83 -40.82 -0.36 4.70 16 31 H 0.18 4.40 5.92 -52.49 -0.31 4.09 16 32 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 33 H 0.15 2.79 8.06 -52.49 -0.42 2.37 16 LS Contribution 296.97 15.07 4.48 4.48 Total: -1.00 -35.39 296.97 -5.13 -40.53 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -3.42 Total: 13.51 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: -1.42 Total: 6.63 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: 0.10 Total: -58.80 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: 0.16 Total: -20.04 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.02 Total: 13.70 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -35.39 -5.13 -40.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341255939.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.120 kcal (2) G-P(sol) polarization free energy of solvation -35.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds