Wall clock time and date at job start Mon Mar 30 2020 00:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34768 * 119.99916 * 2 1 4 4 O 1.21588 * 120.00251 * 359.97438 * 3 2 1 5 5 N 1.34778 * 120.00222 * 179.97438 * 3 2 1 6 6 C 1.46496 * 120.00594 * 179.97438 * 5 3 2 7 7 C 1.50699 * 109.47331 * 180.02562 * 6 5 3 8 8 O 1.21304 * 120.00152 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99798 * 180.27531 * 7 6 5 10 10 C 1.40595 * 119.99764 * 179.72414 * 9 7 6 11 11 C 1.40646 * 126.08311 * 359.69131 * 10 9 7 12 12 N 1.30914 * 108.38784 * 179.87895 * 11 10 9 13 13 N 1.40065 * 108.40439 * 0.38138 * 12 11 10 14 14 C 1.37327 * 126.06489 * 179.73676 * 13 12 11 15 15 H 1.08003 * 119.99416 * 174.15969 * 14 13 12 16 16 C 1.38979 * 120.00372 * 354.16004 * 14 13 12 17 17 N 1.31300 * 119.99795 * 5.93274 * 16 14 13 18 18 Si 1.86793 * 120.00339 * 185.93961 * 16 14 13 19 19 H 1.48508 * 109.47464 * 94.97550 * 18 16 14 20 20 H 1.48497 * 109.47452 * 214.97875 * 18 16 14 21 21 H 1.48508 * 109.47127 * 334.97858 * 18 16 14 22 22 C 1.35686 * 126.08204 * 180.02562 * 10 9 7 23 23 H 1.08996 * 109.47360 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47256 * 300.00653 * 1 2 3 25 25 H 1.09002 * 109.47010 * 59.99980 * 1 2 3 26 26 H 0.96999 * 119.99812 * 179.97438 * 2 1 3 27 27 H 0.96999 * 119.99506 * 0.02562 * 5 3 2 28 28 H 1.09004 * 109.47011 * 60.00232 * 6 5 3 29 29 H 1.08998 * 109.47326 * 300.00855 * 6 5 3 30 30 H 0.97001 * 120.00137 * 359.73317 * 9 7 6 31 31 H 1.07998 * 125.80732 * 0.02562 * 11 10 9 32 32 H 0.96997 * 119.99732 * 180.02562 * 17 16 14 33 33 H 1.07995 * 126.24184 * 359.92839 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5310 2.2201 -0.0005 5 7 3.4866 1.1672 0.0005 6 6 4.2192 2.4359 0.0000 7 6 5.7008 2.1605 0.0001 8 8 6.1052 1.0168 0.0001 9 7 6.5766 3.1849 0.0052 10 6 7.9588 2.9279 0.0112 11 6 8.5655 1.6591 0.0186 12 7 9.8644 1.8223 0.0199 13 7 10.1374 3.1961 0.0223 14 6 11.3838 3.7727 0.0293 15 1 11.4836 4.8439 -0.0647 16 6 12.5165 2.9777 0.1573 17 7 12.4042 1.6695 0.1543 18 14 14.1988 3.7702 0.3337 19 1 14.5459 3.8799 1.7735 20 1 15.2140 2.9360 -0.3580 21 1 14.1739 5.1250 -0.2740 22 6 8.9449 3.8600 0.0172 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.9500 -0.8401 0.0004 27 1 3.9716 0.3272 0.0005 28 1 3.9556 3.0080 0.8895 29 1 3.9561 3.0069 -0.8904 30 1 6.2533 4.0994 0.0049 31 1 8.0478 0.7112 0.0203 32 1 13.1948 1.1147 0.2440 33 1 8.8106 4.9316 0.0172 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341255939.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:59 Heat of formation + Delta-G solvation = -5.167703 kcal Electronic energy + Delta-G solvation = -19225.176468 eV Core-core repulsion = 15901.168013 eV Total energy + Delta-G solvation = -3324.008455 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.78063 -41.08013 -40.06978 -36.08669 -35.61837 -35.37780 -34.98150 -32.25692 -30.40230 -28.89284 -27.03199 -26.18355 -22.94212 -22.19085 -21.79823 -21.22171 -19.96020 -19.18327 -18.00032 -17.40982 -17.17129 -17.04652 -16.72015 -16.12744 -15.80914 -15.40045 -15.22134 -15.19603 -14.75375 -14.24197 -14.21016 -13.48751 -13.44424 -13.29152 -12.99276 -12.94874 -12.79673 -12.06453 -11.85799 -11.49379 -11.02878 -10.87400 -10.75387 -10.45136 -10.09419 -9.83057 -8.53622 -8.47005 -6.23764 1.18901 1.40408 1.48060 1.54722 1.59203 1.86097 2.10185 2.10836 2.35646 2.51729 2.90824 3.08748 3.36441 3.78256 4.37401 4.40003 4.45546 4.50935 4.61510 4.70778 4.98933 5.01696 5.06095 5.29643 5.32049 5.43991 5.50807 5.93740 5.97281 6.31601 6.68354 6.74458 7.02222 7.30854 7.47146 7.52457 7.68956 8.52666 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.079432 B = 0.003056 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 352.419991 B = 9160.464051 C = 9487.592915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.740 5.740 3 C 0.701 3.299 4 O -0.632 6.632 5 N -0.732 5.732 6 C 0.136 3.864 7 C 0.497 3.503 8 O -0.570 6.570 9 N -0.609 5.609 10 C -0.046 4.046 11 C -0.057 4.057 12 N -0.312 5.312 13 N -0.170 5.170 14 C -0.354 4.354 15 H 0.141 0.859 16 C -0.006 4.006 17 N -0.825 5.825 18 Si 1.018 2.982 19 H -0.267 1.267 20 H -0.277 1.277 21 H -0.243 1.243 22 C -0.078 4.078 23 H 0.111 0.889 24 H 0.049 0.951 25 H 0.049 0.951 26 H 0.413 0.587 27 H 0.412 0.588 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.424 0.576 31 H 0.172 0.828 32 H 0.276 0.724 33 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.070 1.119 0.025 16.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.396 5.396 3 C 0.401 3.599 4 O -0.514 6.514 5 N -0.390 5.390 6 C 0.008 3.992 7 C 0.285 3.715 8 O -0.449 6.449 9 N -0.254 5.254 10 C -0.152 4.152 11 C -0.232 4.232 12 N -0.144 5.144 13 N 0.061 4.939 14 C -0.485 4.485 15 H 0.158 0.842 16 C -0.218 4.218 17 N -0.453 5.453 18 Si 0.837 3.163 19 H -0.192 1.192 20 H -0.202 1.202 21 H -0.166 1.166 22 C -0.228 4.228 23 H 0.130 0.870 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.249 0.751 27 H 0.249 0.751 28 H 0.130 0.870 29 H 0.130 0.870 30 H 0.261 0.739 31 H 0.188 0.812 32 H 0.086 0.914 33 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -15.119 0.488 0.027 15.127 hybrid contribution 0.279 0.034 0.053 0.286 sum -14.841 0.522 0.080 14.850 Atomic orbital electron populations 1.21566 0.76877 1.04134 1.01437 1.44885 1.08526 1.06793 1.79387 1.16014 0.81380 0.84804 0.77734 1.90895 1.68649 1.31795 1.60048 1.44728 1.04517 1.10027 1.79736 1.20774 0.85351 0.86942 1.06112 1.20890 0.89054 0.84778 0.76811 1.90579 1.79895 1.22872 1.51568 1.42273 1.02069 1.10187 1.70861 1.17304 0.83697 0.92674 1.21539 1.24214 0.91504 0.98468 1.09038 1.78147 1.14337 0.94544 1.27396 1.44838 1.05079 1.03379 1.40566 1.20605 0.79772 0.94692 1.53463 0.84212 1.26864 1.05086 0.95608 0.94237 1.70398 1.32002 1.05619 1.37253 0.84586 0.73835 0.78899 0.78949 1.19232 1.20203 1.16577 1.22042 0.84569 0.98572 1.17650 0.87008 0.93212 0.93199 0.75108 0.75056 0.86970 0.86971 0.73877 0.81163 0.91421 0.79418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.33 10.70 127.77 1.37 2.69 16 2 N -0.74 -12.18 5.72 -500.19 -2.86 -15.04 16 3 C 0.70 16.97 8.57 179.06 1.53 18.50 16 4 O -0.63 -19.79 16.34 -3.99 -0.07 -19.85 16 5 N -0.73 -16.82 5.53 -482.31 -2.67 -19.49 16 6 C 0.14 3.08 6.15 85.63 0.53 3.60 16 7 C 0.50 15.25 7.87 87.66 0.69 15.94 16 8 O -0.57 -21.93 12.82 -3.10 -0.04 -21.97 16 9 N -0.61 -19.11 5.47 -303.92 -1.66 -20.77 16 10 C -0.05 -2.01 6.90 37.73 0.26 -1.75 16 11 C -0.06 -2.99 10.85 85.42 0.93 -2.06 16 12 N -0.31 -18.52 10.42 -56.47 -0.59 -19.11 16 13 N -0.17 -9.27 3.74 -190.02 -0.71 -9.98 16 14 C -0.35 -18.54 10.24 84.01 0.86 -17.68 16 15 H 0.14 6.33 7.84 -2.91 -0.02 6.31 16 16 C -0.01 -0.33 5.50 84.95 0.47 0.14 16 17 N -0.82 -47.27 11.84 21.66 0.26 -47.02 16 18 Si 1.02 38.26 29.55 68.60 2.03 40.29 16 19 H -0.27 -9.78 7.11 99.48 0.71 -9.08 16 20 H -0.28 -10.31 7.11 99.48 0.71 -9.60 16 21 H -0.24 -8.21 7.11 99.48 0.71 -7.50 16 22 C -0.08 -3.49 11.49 83.38 0.96 -2.53 16 23 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 24 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.05 0.73 8.14 -2.39 -0.02 0.72 16 26 H 0.41 4.56 8.84 -92.71 -0.82 3.74 16 27 H 0.41 9.23 7.45 -92.71 -0.69 8.54 16 28 H 0.11 2.23 8.14 -2.38 -0.02 2.21 16 29 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.42 9.34 8.83 -92.71 -0.82 8.52 16 31 H 0.17 8.91 5.92 -2.91 -0.02 8.90 16 32 H 0.28 14.54 8.31 -92.71 -0.77 13.77 16 33 H 0.19 6.56 8.06 -2.91 -0.02 6.53 16 Total: -1.00 -79.70 296.97 0.14 -79.56 By element: Atomic # 1 Polarization: 37.68 SS G_CDS: -1.14 Total: 36.54 kcal Atomic # 6 Polarization: 9.26 SS G_CDS: 7.59 Total: 16.85 kcal Atomic # 7 Polarization: -123.18 SS G_CDS: -8.23 Total: -131.41 kcal Atomic # 8 Polarization: -41.72 SS G_CDS: -0.11 Total: -41.83 kcal Atomic # 14 Polarization: 38.26 SS G_CDS: 2.03 Total: 40.29 kcal Total: -79.70 0.14 -79.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341255939.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.388 kcal (2) G-P(sol) polarization free energy of solvation -79.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds