Wall clock time and date at job start Mon Mar 30 2020 00:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.47355 * 2 1 4 4 O 1.45206 * 109.46688 * 119.99763 * 2 1 3 5 5 C 1.34226 * 116.99788 * 269.99683 * 4 2 1 6 6 O 1.20831 * 120.00256 * 0.02562 * 5 4 2 7 7 C 1.50705 * 120.00041 * 180.02562 * 5 4 2 8 8 C 1.53002 * 109.46886 * 180.02562 * 7 5 4 9 9 C 1.50705 * 109.46886 * 180.02562 * 8 7 5 10 10 H 1.08002 * 119.99528 * 359.97438 * 9 8 7 11 11 C 1.37870 * 120.00167 * 180.02562 * 9 8 7 12 12 N 1.31518 * 119.99868 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00229 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46800 * 89.99853 * 13 11 9 15 15 H 1.48495 * 109.47393 * 209.99693 * 13 11 9 16 16 H 1.48496 * 109.47115 * 330.00198 * 13 11 9 17 17 C 1.50703 * 109.47125 * 239.99110 * 2 1 3 18 18 C 1.38145 * 119.59529 * 125.00334 * 17 2 1 19 19 C 1.38709 * 119.22035 * 179.97438 * 18 17 2 20 20 C 1.38550 * 118.45387 * 0.02562 * 19 18 17 21 21 C 1.38525 * 119.13379 * 359.97438 * 20 19 18 22 22 F 1.35097 * 119.64619 * 179.97438 * 21 20 19 23 23 N 1.31898 * 119.60595 * 304.98016 * 17 2 1 24 24 H 1.08997 * 109.46996 * 300.00741 * 1 2 3 25 25 H 1.09003 * 109.47030 * 60.00666 * 1 2 3 26 26 H 1.09007 * 109.47434 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46474 * 299.99958 * 7 5 4 28 28 H 1.08996 * 109.47263 * 59.99957 * 7 5 4 29 29 H 1.08996 * 109.47305 * 299.99777 * 8 7 5 30 30 H 1.09001 * 109.47283 * 60.00330 * 8 7 5 31 31 H 0.96999 * 119.99674 * 180.02562 * 12 11 9 32 32 H 1.08001 * 120.39622 * 359.70642 * 18 17 2 33 33 H 1.08001 * 120.77493 * 179.97438 * 19 18 17 34 34 H 1.07994 * 120.43278 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0139 -0.6845 1.1857 5 6 2.2170 0.0641 2.2811 6 8 1.9973 1.2519 2.2506 7 6 2.7191 -0.5769 3.5493 8 6 2.8630 0.4893 4.6372 9 6 3.3657 -0.1516 5.9052 10 1 3.5624 -1.2132 5.9324 11 6 3.5735 0.6171 7.0307 12 7 3.3325 1.9096 6.9979 13 14 4.1959 -0.1773 8.6026 14 1 5.6807 -0.1531 8.6151 15 1 3.6787 0.5732 9.7749 16 1 3.7233 -1.5836 8.6672 17 6 2.0323 -0.7106 -1.2304 18 6 2.9094 -0.0654 -2.0806 19 6 3.3673 -0.7269 -3.2105 20 6 2.9235 -2.0184 -3.4446 21 6 2.0436 -2.6021 -2.5479 22 9 1.6039 -3.8607 -2.7663 23 7 1.6297 -1.9411 -1.4822 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 2.0102 -1.3370 3.8774 28 1 3.6882 -1.0399 3.3634 29 1 3.5717 1.2497 4.3092 30 1 1.8937 0.9519 4.8231 31 1 3.4790 2.4505 7.7897 32 1 3.2315 0.9438 -1.8704 33 1 4.0530 -0.2462 -3.8925 34 1 3.2592 -2.5629 -4.3147 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343930977.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:50 Heat of formation + Delta-G solvation = -104.723900 kcal Electronic energy + Delta-G solvation = -19282.965721 eV Core-core repulsion = 15902.427472 eV Total energy + Delta-G solvation = -3380.538248 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.24584 -40.75775 -39.78453 -36.41205 -33.61226 -33.40612 -32.56453 -31.08947 -29.82388 -26.16642 -24.98121 -23.79420 -22.76592 -21.30813 -19.77534 -18.22182 -17.66058 -17.11475 -16.52211 -16.35978 -16.15986 -15.82321 -15.60709 -14.48047 -14.31710 -14.07803 -13.69510 -13.51680 -13.38665 -12.87001 -12.74986 -12.29298 -12.21744 -12.00376 -11.35038 -11.14377 -10.95862 -10.64905 -10.56722 -10.39208 -10.05615 -10.01442 -9.85103 -9.56830 -9.29204 -9.16891 -8.37666 -6.01651 -4.06374 0.47741 0.75402 2.77512 2.86717 3.19486 3.31997 3.37914 3.40346 3.44073 4.03664 4.27054 4.45008 4.53207 4.61265 4.90996 4.99943 5.09434 5.30865 5.33918 5.34383 5.48581 5.63592 5.77831 5.79914 6.10417 6.12719 6.21054 6.26571 6.63231 6.91117 7.35361 7.66256 7.73017 7.97772 8.23862 8.39495 9.00633 9.57759 11.09350 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.033386 B = 0.003404 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.486098 B = 8224.645950 C = 8485.579877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.134 3.866 3 H 0.104 0.896 4 O -0.350 6.350 5 C 0.457 3.543 6 O -0.505 6.505 7 C -0.103 4.103 8 C 0.033 3.967 9 C -0.528 4.528 10 H 0.059 0.941 11 C 0.059 3.941 12 N -0.890 5.890 13 Si 0.896 3.104 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.273 1.273 17 C 0.169 3.831 18 C -0.167 4.167 19 C -0.046 4.046 20 C -0.193 4.193 21 C 0.308 3.692 22 F -0.112 7.112 23 N -0.488 5.488 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.026 0.974 30 H 0.026 0.974 31 H 0.262 0.738 32 H 0.148 0.852 33 H 0.150 0.850 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.418 -5.369 -22.369 23.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.078 3.922 3 H 0.122 0.878 4 O -0.267 6.267 5 C 0.301 3.699 6 O -0.391 6.391 7 C -0.141 4.141 8 C -0.004 4.004 9 C -0.567 4.567 10 H 0.077 0.923 11 C -0.143 4.143 12 N -0.528 5.528 13 Si 0.723 3.277 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.198 1.198 17 C 0.031 3.969 18 C -0.187 4.187 19 C -0.072 4.072 20 C -0.214 4.214 21 C 0.154 3.846 22 F -0.091 7.091 23 N -0.203 5.203 24 H 0.091 0.909 25 H 0.088 0.912 26 H 0.095 0.905 27 H 0.112 0.888 28 H 0.110 0.890 29 H 0.044 0.956 30 H 0.045 0.955 31 H 0.071 0.929 32 H 0.166 0.834 33 H 0.168 0.832 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.092 -5.296 -21.733 22.466 hybrid contribution 0.776 -0.183 0.170 0.815 sum -1.317 -5.479 -21.563 22.287 Atomic orbital electron populations 1.22126 0.92837 1.03995 1.03058 1.21339 0.95452 0.95381 0.80008 0.87843 1.86744 1.77397 1.42687 1.19901 1.24867 0.73642 0.86376 0.84999 1.90623 1.47824 1.16896 1.83753 1.21786 1.01780 1.02044 0.88447 1.19024 0.98578 0.92430 0.90340 1.21161 1.44992 0.94762 0.95745 0.92303 1.25014 0.95478 0.94828 0.98983 1.69994 1.48280 1.05045 1.29498 0.86540 0.79004 0.79383 0.82752 1.20613 1.21184 1.19769 1.20687 0.92672 0.88571 0.94961 1.22085 0.98238 1.02625 0.95792 1.21497 0.96625 0.93002 0.96040 1.21891 1.00426 0.97394 1.01680 1.18142 0.93541 0.81277 0.91656 1.91639 1.88092 1.35850 1.93506 1.66726 1.25761 1.09385 1.18432 0.90938 0.91176 0.90504 0.88828 0.88970 0.95582 0.95516 0.92857 0.83391 0.83238 0.83300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 9.41 37.16 0.35 -1.73 16 2 C 0.13 1.88 2.89 -27.88 -0.08 1.80 16 3 H 0.10 1.39 6.88 -51.93 -0.36 1.04 16 4 O -0.35 -6.03 9.86 -39.25 -0.39 -6.41 16 5 C 0.46 8.99 7.93 36.01 0.29 9.28 16 6 O -0.50 -11.09 15.20 -18.75 -0.29 -11.38 16 7 C -0.10 -2.13 5.75 -27.88 -0.16 -2.29 16 8 C 0.03 0.88 4.26 -27.88 -0.12 0.76 16 9 C -0.53 -14.80 9.11 -34.44 -0.31 -15.12 16 10 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 11 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 12 N -0.89 -26.93 13.29 55.43 0.74 -26.19 16 13 Si 0.90 21.48 29.54 -169.99 -5.02 16.45 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 15 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 17 C 0.17 2.11 5.82 -82.60 -0.48 1.63 16 18 C -0.17 -1.55 9.71 -39.44 -0.38 -1.93 16 19 C -0.05 -0.33 10.17 -39.29 -0.40 -0.73 16 20 C -0.19 -1.57 10.09 -39.36 -0.40 -1.96 16 21 C 0.31 3.57 8.41 -17.35 -0.15 3.42 16 22 F -0.11 -1.33 17.29 2.25 0.04 -1.29 16 23 N -0.49 -6.70 9.89 -9.81 -0.10 -6.79 16 24 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.08 1.02 7.95 -51.92 -0.41 0.61 16 27 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 28 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 29 H 0.03 0.74 8.10 -51.93 -0.42 0.31 16 30 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 31 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.15 1.06 7.95 -52.49 -0.42 0.64 16 33 H 0.15 0.55 8.06 -52.49 -0.42 0.13 16 34 H 0.15 0.78 8.06 -52.49 -0.42 0.35 16 LS Contribution 309.10 15.07 4.66 4.66 Total: -1.00 -33.13 309.10 -6.40 -39.54 By element: Atomic # 1 Polarization: 0.79 SS G_CDS: -4.11 Total: -3.32 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -1.94 Total: -5.27 kcal Atomic # 7 Polarization: -33.63 SS G_CDS: 0.64 Total: -32.99 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: -0.67 Total: -17.79 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -33.13 -6.40 -39.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343930977.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.186 kcal (2) G-P(sol) polarization free energy of solvation -33.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds