Wall clock time and date at job start Mon Mar 30 2020 00:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.47355 * 2 1 4 4 O 1.45206 * 109.46688 * 119.99763 * 2 1 3 5 5 C 1.34226 * 116.99788 * 269.99683 * 4 2 1 6 6 O 1.20831 * 120.00256 * 0.02562 * 5 4 2 7 7 C 1.50705 * 120.00041 * 180.02562 * 5 4 2 8 8 C 1.53002 * 109.46886 * 180.02562 * 7 5 4 9 9 C 1.50705 * 109.46886 * 180.02562 * 8 7 5 10 10 H 1.08002 * 119.99528 * 359.97438 * 9 8 7 11 11 C 1.37870 * 120.00167 * 180.02562 * 9 8 7 12 12 N 1.31518 * 119.99868 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00229 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46800 * 89.99853 * 13 11 9 15 15 H 1.48495 * 109.47393 * 209.99693 * 13 11 9 16 16 H 1.48496 * 109.47115 * 330.00198 * 13 11 9 17 17 C 1.50703 * 109.47125 * 239.99110 * 2 1 3 18 18 C 1.38145 * 119.59529 * 125.00334 * 17 2 1 19 19 C 1.38709 * 119.22035 * 179.97438 * 18 17 2 20 20 C 1.38550 * 118.45387 * 0.02562 * 19 18 17 21 21 C 1.38525 * 119.13379 * 359.97438 * 20 19 18 22 22 F 1.35097 * 119.64619 * 179.97438 * 21 20 19 23 23 N 1.31898 * 119.60595 * 304.98016 * 17 2 1 24 24 H 1.08997 * 109.46996 * 300.00741 * 1 2 3 25 25 H 1.09003 * 109.47030 * 60.00666 * 1 2 3 26 26 H 1.09007 * 109.47434 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46474 * 299.99958 * 7 5 4 28 28 H 1.08996 * 109.47263 * 59.99957 * 7 5 4 29 29 H 1.08996 * 109.47305 * 299.99777 * 8 7 5 30 30 H 1.09001 * 109.47283 * 60.00330 * 8 7 5 31 31 H 0.96999 * 119.99674 * 180.02562 * 12 11 9 32 32 H 1.08001 * 120.39622 * 359.70642 * 18 17 2 33 33 H 1.08001 * 120.77493 * 179.97438 * 19 18 17 34 34 H 1.07994 * 120.43278 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0139 -0.6845 1.1857 5 6 2.2170 0.0641 2.2811 6 8 1.9973 1.2519 2.2506 7 6 2.7191 -0.5769 3.5493 8 6 2.8630 0.4893 4.6372 9 6 3.3657 -0.1516 5.9052 10 1 3.5624 -1.2132 5.9324 11 6 3.5735 0.6171 7.0307 12 7 3.3325 1.9096 6.9979 13 14 4.1959 -0.1773 8.6026 14 1 5.6807 -0.1531 8.6151 15 1 3.6787 0.5732 9.7749 16 1 3.7233 -1.5836 8.6672 17 6 2.0323 -0.7106 -1.2304 18 6 2.9094 -0.0654 -2.0806 19 6 3.3673 -0.7269 -3.2105 20 6 2.9235 -2.0184 -3.4446 21 6 2.0436 -2.6021 -2.5479 22 9 1.6039 -3.8607 -2.7663 23 7 1.6297 -1.9411 -1.4822 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 2.0102 -1.3370 3.8774 28 1 3.6882 -1.0399 3.3634 29 1 3.5717 1.2497 4.3092 30 1 1.8937 0.9519 4.8231 31 1 3.4790 2.4505 7.7897 32 1 3.2315 0.9438 -1.8704 33 1 4.0530 -0.2462 -3.8925 34 1 3.2592 -2.5629 -4.3147 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343930977.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:50 Heat of formation + Delta-G solvation = -124.932757 kcal Electronic energy + Delta-G solvation = -19283.842042 eV Core-core repulsion = 15902.427472 eV Total energy + Delta-G solvation = -3381.414570 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.07193 -41.86680 -40.97703 -37.85352 -35.64942 -34.37380 -33.48820 -32.98516 -30.73045 -28.10445 -25.99170 -24.62924 -24.31567 -22.61176 -21.35165 -19.23618 -18.98906 -18.50052 -17.81322 -17.33770 -17.15804 -17.14920 -16.90052 -16.47447 -15.38207 -15.27378 -14.85027 -14.58155 -14.29074 -14.25833 -14.11643 -13.71698 -13.41551 -13.25414 -13.05622 -12.83527 -12.51460 -12.36609 -12.01676 -11.87123 -11.74000 -11.47677 -11.29462 -11.07121 -10.71210 -10.57240 -10.07894 -8.19898 -6.33448 -0.28760 0.05673 1.20942 1.43389 1.45670 1.56471 1.66009 2.38509 2.42902 2.54708 3.13860 3.20214 3.52811 3.75654 3.88629 3.98627 4.05750 4.07925 4.32981 4.40895 4.42856 4.61056 4.63770 4.71539 4.89349 4.92980 5.00566 5.09221 5.36406 5.47208 5.54067 5.55591 5.80658 6.13625 6.54476 6.77318 6.85594 7.36618 8.92613 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.033386 B = 0.003404 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.486098 B = 8224.645950 C = 8485.579877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.127 3.873 3 H 0.107 0.893 4 O -0.350 6.350 5 C 0.467 3.533 6 O -0.535 6.535 7 C -0.096 4.096 8 C 0.040 3.960 9 C -0.546 4.546 10 H 0.074 0.926 11 C -0.002 4.002 12 N -0.934 5.934 13 Si 0.973 3.027 14 H -0.271 1.271 15 H -0.285 1.285 16 H -0.258 1.258 17 C 0.141 3.859 18 C -0.162 4.162 19 C -0.033 4.033 20 C -0.173 4.173 21 C 0.279 3.721 22 F -0.122 7.122 23 N -0.526 5.526 24 H 0.056 0.944 25 H 0.095 0.905 26 H 0.067 0.933 27 H 0.111 0.889 28 H 0.113 0.887 29 H -0.006 1.006 30 H -0.008 1.008 31 H 0.264 0.736 32 H 0.169 0.831 33 H 0.196 0.804 34 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.027 -6.449 -23.938 24.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.072 3.928 3 H 0.125 0.875 4 O -0.267 6.267 5 C 0.313 3.687 6 O -0.424 6.424 7 C -0.133 4.133 8 C 0.003 3.997 9 C -0.584 4.584 10 H 0.093 0.907 11 C -0.200 4.200 12 N -0.573 5.573 13 Si 0.797 3.203 14 H -0.196 1.196 15 H -0.210 1.210 16 H -0.182 1.182 17 C 0.004 3.996 18 C -0.181 4.181 19 C -0.058 4.058 20 C -0.194 4.194 21 C 0.125 3.875 22 F -0.102 7.102 23 N -0.242 5.242 24 H 0.076 0.924 25 H 0.114 0.886 26 H 0.086 0.914 27 H 0.129 0.871 28 H 0.131 0.869 29 H 0.012 0.988 30 H 0.010 0.990 31 H 0.073 0.927 32 H 0.186 0.814 33 H 0.213 0.787 34 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -0.706 -6.407 -23.328 24.202 hybrid contribution 0.329 0.160 0.504 0.623 sum -0.376 -6.247 -22.824 23.667 Atomic orbital electron populations 1.22081 0.92311 1.03517 1.03524 1.21654 0.96092 0.95694 0.79366 0.87483 1.86691 1.77051 1.42607 1.20337 1.24461 0.73047 0.85750 0.85489 1.90610 1.49265 1.18121 1.84405 1.21525 1.03591 1.00474 0.87708 1.18790 0.95644 0.93099 0.92159 1.21634 1.44683 0.95629 0.96429 0.90749 1.26061 0.95553 0.95301 1.03081 1.70150 1.49589 1.06875 1.30734 0.85329 0.78595 0.78791 0.77603 1.19624 1.21046 1.18230 1.20511 0.94980 0.88909 0.95229 1.22391 0.96656 1.03436 0.95660 1.22027 0.96019 0.92277 0.95458 1.22301 0.98114 0.97678 1.01316 1.18519 0.95184 0.81288 0.92477 1.91609 1.88477 1.36511 1.93574 1.66493 1.27190 1.10323 1.20181 0.92449 0.88643 0.91380 0.87115 0.86916 0.98774 0.98960 0.92702 0.81380 0.78724 0.79935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.06 9.41 71.98 0.68 -3.39 16 2 C 0.13 3.56 2.89 29.85 0.09 3.65 16 3 H 0.11 2.89 6.88 -2.39 -0.02 2.87 16 4 O -0.35 -12.14 9.86 -51.38 -0.51 -12.65 16 5 C 0.47 18.72 7.93 71.24 0.56 19.29 16 6 O -0.53 -24.33 15.20 21.95 0.33 -24.00 16 7 C -0.10 -3.98 5.75 29.85 0.17 -3.81 16 8 C 0.04 2.20 4.26 29.85 0.13 2.32 16 9 C -0.55 -30.78 9.11 25.60 0.23 -30.54 16 10 H 0.07 3.87 7.74 -2.91 -0.02 3.85 16 11 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 12 N -0.93 -57.88 13.29 21.45 0.28 -57.60 16 13 Si 0.97 43.92 29.54 68.60 2.03 45.95 16 14 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 15 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 16 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 17 C 0.14 3.39 5.82 42.53 0.25 3.63 16 18 C -0.16 -2.55 9.71 22.36 0.22 -2.34 16 19 C -0.03 -0.33 10.17 22.46 0.23 -0.10 16 20 C -0.17 -2.23 10.09 22.41 0.23 -2.00 16 21 C 0.28 6.14 8.41 84.73 0.71 6.85 16 22 F -0.12 -2.86 17.29 44.97 0.78 -2.08 16 23 N -0.53 -14.24 9.89 -184.95 -1.83 -16.07 16 24 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.07 1.86 7.95 -2.38 -0.02 1.84 16 27 H 0.11 4.22 8.14 -2.39 -0.02 4.20 16 28 H 0.11 4.22 8.14 -2.39 -0.02 4.20 16 29 H -0.01 -0.37 8.10 -2.39 -0.02 -0.39 16 30 H -0.01 -0.49 8.10 -2.39 -0.02 -0.51 16 31 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 32 H 0.17 1.89 7.95 -2.91 -0.02 1.87 16 33 H 0.20 0.23 8.06 -2.91 -0.02 0.21 16 34 H 0.18 1.06 8.06 -2.91 -0.02 1.04 16 Total: -1.00 -74.73 309.10 6.15 -68.59 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: 1.11 Total: 3.93 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: 3.95 Total: -6.08 kcal Atomic # 7 Polarization: -72.12 SS G_CDS: -1.54 Total: -73.66 kcal Atomic # 8 Polarization: -36.48 SS G_CDS: -0.17 Total: -36.65 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.78 Total: -2.08 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -74.73 6.15 -68.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343930977.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.344 kcal (2) G-P(sol) polarization free energy of solvation -74.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds