Wall clock time and date at job start Mon Mar 30 2020 00:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47314 * 2 1 4 4 O 1.45198 * 109.47028 * 240.00183 * 2 1 3 5 5 C 1.34232 * 117.00132 * 90.00000 * 4 2 1 6 6 O 1.20826 * 120.00009 * 359.97438 * 5 4 2 7 7 C 1.50700 * 120.00227 * 180.02562 * 5 4 2 8 8 C 1.53003 * 109.47240 * 179.97438 * 7 5 4 9 9 C 1.50702 * 109.46922 * 179.97438 * 8 7 5 10 10 H 1.07997 * 120.00199 * 0.02562 * 9 8 7 11 11 C 1.37872 * 119.99772 * 179.97438 * 9 8 7 12 12 N 1.31521 * 120.00284 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99994 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47210 * 60.00222 * 13 11 9 15 15 H 1.48506 * 109.46830 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47246 * 300.00095 * 13 11 9 17 17 C 1.50700 * 109.47405 * 119.99962 * 2 1 3 18 18 C 1.38146 * 119.59863 * 124.99541 * 17 2 1 19 19 C 1.38706 * 119.21913 * 179.72473 * 18 17 2 20 20 C 1.38548 * 118.45295 * 0.28022 * 19 18 17 21 21 C 1.38520 * 119.14011 * 359.97438 * 20 19 18 22 22 F 1.35095 * 119.64677 * 180.02562 * 21 20 19 23 23 N 1.31905 * 119.60489 * 305.29337 * 17 2 1 24 24 H 1.09008 * 109.46692 * 299.99945 * 1 2 3 25 25 H 1.09000 * 109.47245 * 59.99554 * 1 2 3 26 26 H 1.08998 * 109.47039 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46675 * 299.99980 * 7 5 4 28 28 H 1.09001 * 109.46994 * 59.99775 * 7 5 4 29 29 H 1.09004 * 109.46709 * 299.99763 * 8 7 5 30 30 H 1.08994 * 109.46813 * 59.99480 * 8 7 5 31 31 H 0.96996 * 120.00245 * 180.02562 * 12 11 9 32 32 H 1.08002 * 120.39324 * 0.02562 * 18 17 2 33 33 H 1.08010 * 120.77398 * 180.30008 * 19 18 17 34 34 H 1.08004 * 120.42712 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0140 -0.6844 -1.1856 5 6 2.2171 0.0641 -2.2811 6 8 1.9973 1.2518 -2.2506 7 6 2.7182 -0.5771 -3.5496 8 6 2.8623 0.4890 -4.6375 9 6 3.3640 -0.1521 -5.9057 10 1 3.5600 -1.2138 -5.9332 11 6 3.5717 0.6166 -7.0313 12 7 3.3316 1.9092 -6.9984 13 14 4.1929 -0.1782 -8.6035 14 1 3.2267 -1.2139 -9.0498 15 1 4.3316 0.8564 -9.6597 16 1 5.5133 -0.8090 -8.3511 17 6 2.0324 -0.7104 1.2304 18 6 2.9094 -1.7694 1.0967 19 6 3.3713 -2.4139 2.2347 20 6 2.9274 -1.9710 3.4702 21 6 2.0434 -0.9061 3.5273 22 9 1.6044 -0.4656 4.7266 23 7 1.6249 -0.3174 2.4218 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 3.6870 -1.0407 -3.3640 28 1 2.0086 -1.3368 -3.8775 29 1 1.8931 0.9523 -4.8228 30 1 3.5715 1.2490 -4.3097 31 1 3.4774 2.4500 -7.7903 32 1 3.2353 -2.0886 0.1177 33 1 4.0612 -3.2415 2.1595 34 1 3.2669 -2.4494 4.3770 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343930978.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:53 Heat of formation + Delta-G solvation = -104.907080 kcal Electronic energy + Delta-G solvation = -19269.564736 eV Core-core repulsion = 15889.018544 eV Total energy + Delta-G solvation = -3380.546192 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.26853 -40.78802 -39.83027 -36.52127 -33.67555 -33.50027 -32.33869 -31.11453 -29.87068 -26.23595 -24.97034 -23.73285 -22.71979 -21.36335 -19.86852 -18.27093 -17.60066 -17.08688 -16.46501 -16.36117 -16.28221 -15.81883 -15.65307 -14.50766 -14.42573 -14.19761 -13.84687 -13.52813 -13.16823 -12.95756 -12.62536 -12.33941 -12.26224 -11.91199 -11.45727 -11.24310 -10.97408 -10.74851 -10.69101 -10.28427 -10.09502 -10.00735 -9.91462 -9.61899 -9.23129 -9.17043 -8.40512 -6.04374 -4.09773 0.57716 0.78917 2.58423 2.72988 3.23488 3.30705 3.35610 3.36935 3.45760 4.07332 4.33868 4.41838 4.57977 4.76428 4.89564 5.02068 5.15164 5.28000 5.31014 5.46576 5.55502 5.70975 5.80112 5.83928 6.04707 6.07272 6.13063 6.29306 6.56758 6.84662 7.31470 7.62332 7.68841 7.94300 8.17524 8.33717 8.97095 9.54543 11.06514 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.044412 B = 0.003271 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.315693 B = 8557.958540 C = 8950.102913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.134 3.866 3 H 0.108 0.892 4 O -0.360 6.360 5 C 0.458 3.542 6 O -0.499 6.499 7 C -0.102 4.102 8 C 0.033 3.967 9 C -0.530 4.530 10 H 0.058 0.942 11 C 0.059 3.941 12 N -0.889 5.889 13 Si 0.896 3.104 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.276 1.276 17 C 0.169 3.831 18 C -0.160 4.160 19 C -0.046 4.046 20 C -0.197 4.197 21 C 0.309 3.691 22 F -0.113 7.113 23 N -0.507 5.507 24 H 0.082 0.918 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.026 0.974 30 H 0.026 0.974 31 H 0.263 0.737 32 H 0.157 0.843 33 H 0.149 0.851 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.344 -9.783 19.394 21.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.078 3.922 3 H 0.125 0.875 4 O -0.278 6.278 5 C 0.302 3.698 6 O -0.384 6.384 7 C -0.139 4.139 8 C -0.004 4.004 9 C -0.569 4.569 10 H 0.077 0.923 11 C -0.143 4.143 12 N -0.527 5.527 13 Si 0.724 3.276 14 H -0.201 1.201 15 H -0.213 1.213 16 H -0.202 1.202 17 C 0.032 3.968 18 C -0.180 4.180 19 C -0.071 4.071 20 C -0.219 4.219 21 C 0.155 3.845 22 F -0.092 7.092 23 N -0.223 5.223 24 H 0.101 0.899 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.112 0.888 28 H 0.112 0.888 29 H 0.045 0.955 30 H 0.044 0.956 31 H 0.073 0.927 32 H 0.175 0.825 33 H 0.167 0.833 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.016 -8.528 19.433 21.317 hybrid contribution 0.756 -0.787 -0.515 1.207 sum -1.259 -9.315 18.918 21.124 Atomic orbital electron populations 1.22089 0.92255 1.03181 1.03915 1.20997 0.95230 0.96322 0.79679 0.87456 1.86560 1.77884 1.43133 1.20231 1.24864 0.73781 0.86418 0.84751 1.90650 1.47283 1.16906 1.83584 1.21796 1.01763 1.02069 0.88296 1.19028 0.98636 0.92451 0.90329 1.21103 1.45338 0.94686 0.95732 0.92335 1.25019 0.95446 0.94817 0.99002 1.69980 1.48105 1.05039 1.29589 0.86601 0.79385 0.78939 0.82721 1.20150 1.21251 1.20152 1.20522 0.92721 0.93066 0.90517 1.22131 0.98235 0.96459 1.01173 1.21574 0.96533 0.98121 0.90912 1.21855 1.00685 0.98651 1.00667 1.17969 0.93666 0.92064 0.80805 1.91632 1.88214 1.89035 1.40317 1.66431 1.26724 1.31387 0.97767 0.89928 0.90929 0.91722 0.88847 0.88774 0.95516 0.95552 0.92743 0.82531 0.83290 0.83409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 9.40 37.16 0.35 -1.65 16 2 C 0.13 1.87 3.05 -27.88 -0.09 1.79 16 3 H 0.11 1.65 7.16 -51.93 -0.37 1.28 16 4 O -0.36 -5.43 8.34 -39.26 -0.33 -5.76 16 5 C 0.46 8.47 7.93 36.01 0.29 8.75 16 6 O -0.50 -10.84 15.20 -18.75 -0.29 -11.13 16 7 C -0.10 -1.95 5.75 -27.88 -0.16 -2.11 16 8 C 0.03 0.84 4.26 -27.88 -0.12 0.72 16 9 C -0.53 -14.45 9.11 -34.44 -0.31 -14.77 16 10 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 11 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 12 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 13 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 14 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 15 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 17 C 0.17 2.14 6.18 -82.59 -0.51 1.63 16 18 C -0.16 -1.67 9.41 -39.44 -0.37 -2.04 16 19 C -0.05 -0.36 10.17 -39.29 -0.40 -0.76 16 20 C -0.20 -1.66 10.09 -39.36 -0.40 -2.05 16 21 C 0.31 3.51 8.41 -17.35 -0.15 3.36 16 22 F -0.11 -1.29 17.29 2.25 0.04 -1.25 16 23 N -0.51 -6.67 9.88 -9.81 -0.10 -6.77 16 24 H 0.08 0.99 7.94 -51.92 -0.41 0.58 16 25 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 28 H 0.09 1.65 8.14 -51.93 -0.42 1.22 16 29 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 30 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.16 1.53 6.99 -52.49 -0.37 1.16 16 33 H 0.15 0.69 8.06 -52.48 -0.42 0.27 16 34 H 0.15 0.81 8.06 -52.48 -0.42 0.39 16 LS Contribution 307.10 15.07 4.63 4.63 Total: -1.00 -31.71 307.10 -6.36 -38.08 By element: Atomic # 1 Polarization: 1.66 SS G_CDS: -4.07 Total: -2.41 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -1.96 Total: -5.56 kcal Atomic # 7 Polarization: -33.28 SS G_CDS: 0.64 Total: -32.64 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: -0.61 Total: -16.89 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 0.04 Total: -1.25 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.71 -6.36 -38.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343930978.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.832 kcal (2) G-P(sol) polarization free energy of solvation -31.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds