Wall clock time and date at job start Mon Mar 30 2020 00:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47314 * 2 1 4 4 O 1.45198 * 109.47028 * 240.00183 * 2 1 3 5 5 C 1.34232 * 117.00132 * 90.00000 * 4 2 1 6 6 O 1.20826 * 120.00009 * 359.97438 * 5 4 2 7 7 C 1.50700 * 120.00227 * 180.02562 * 5 4 2 8 8 C 1.53003 * 109.47240 * 179.97438 * 7 5 4 9 9 C 1.50702 * 109.46922 * 179.97438 * 8 7 5 10 10 H 1.07997 * 120.00199 * 0.02562 * 9 8 7 11 11 C 1.37872 * 119.99772 * 179.97438 * 9 8 7 12 12 N 1.31521 * 120.00284 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99994 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47210 * 60.00222 * 13 11 9 15 15 H 1.48506 * 109.46830 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47246 * 300.00095 * 13 11 9 17 17 C 1.50700 * 109.47405 * 119.99962 * 2 1 3 18 18 C 1.38146 * 119.59863 * 124.99541 * 17 2 1 19 19 C 1.38706 * 119.21913 * 179.72473 * 18 17 2 20 20 C 1.38548 * 118.45295 * 0.28022 * 19 18 17 21 21 C 1.38520 * 119.14011 * 359.97438 * 20 19 18 22 22 F 1.35095 * 119.64677 * 180.02562 * 21 20 19 23 23 N 1.31905 * 119.60489 * 305.29337 * 17 2 1 24 24 H 1.09008 * 109.46692 * 299.99945 * 1 2 3 25 25 H 1.09000 * 109.47245 * 59.99554 * 1 2 3 26 26 H 1.08998 * 109.47039 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46675 * 299.99980 * 7 5 4 28 28 H 1.09001 * 109.46994 * 59.99775 * 7 5 4 29 29 H 1.09004 * 109.46709 * 299.99763 * 8 7 5 30 30 H 1.08994 * 109.46813 * 59.99480 * 8 7 5 31 31 H 0.96996 * 120.00245 * 180.02562 * 12 11 9 32 32 H 1.08002 * 120.39324 * 0.02562 * 18 17 2 33 33 H 1.08010 * 120.77398 * 180.30008 * 19 18 17 34 34 H 1.08004 * 120.42712 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0140 -0.6844 -1.1856 5 6 2.2171 0.0641 -2.2811 6 8 1.9973 1.2518 -2.2506 7 6 2.7182 -0.5771 -3.5496 8 6 2.8623 0.4890 -4.6375 9 6 3.3640 -0.1521 -5.9057 10 1 3.5600 -1.2138 -5.9332 11 6 3.5717 0.6166 -7.0313 12 7 3.3316 1.9092 -6.9984 13 14 4.1929 -0.1782 -8.6035 14 1 3.2267 -1.2139 -9.0498 15 1 4.3316 0.8564 -9.6597 16 1 5.5133 -0.8090 -8.3511 17 6 2.0324 -0.7104 1.2304 18 6 2.9094 -1.7694 1.0967 19 6 3.3713 -2.4139 2.2347 20 6 2.9274 -1.9710 3.4702 21 6 2.0434 -0.9061 3.5273 22 9 1.6044 -0.4656 4.7266 23 7 1.6249 -0.3174 2.4218 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 3.6870 -1.0407 -3.3640 28 1 2.0086 -1.3368 -3.8775 29 1 1.8931 0.9523 -4.8228 30 1 3.5715 1.2490 -4.3097 31 1 3.4774 2.4500 -7.7903 32 1 3.2353 -2.0886 0.1177 33 1 4.0612 -3.2415 2.1595 34 1 3.2669 -2.4494 4.3770 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343930978.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:53 Heat of formation + Delta-G solvation = -123.724171 kcal Electronic energy + Delta-G solvation = -19270.380706 eV Core-core repulsion = 15889.018544 eV Total energy + Delta-G solvation = -3381.362162 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.09483 -41.91536 -40.98102 -37.92293 -35.63263 -34.46676 -33.38938 -32.88490 -30.79129 -28.10139 -26.02717 -24.64227 -24.19418 -22.63414 -21.39346 -19.26707 -19.05428 -18.16243 -18.02250 -17.41093 -17.17200 -17.01911 -16.93623 -16.46032 -15.53455 -15.34210 -14.96030 -14.50127 -14.32484 -14.24729 -14.06879 -13.74233 -13.40542 -13.26020 -12.90400 -12.77968 -12.54130 -12.48821 -12.02855 -11.93659 -11.73189 -11.45156 -11.27236 -11.05470 -10.76607 -10.54814 -9.99554 -8.17903 -6.31647 -0.20966 0.05087 1.21580 1.36393 1.46523 1.49231 1.57078 2.42664 2.43961 2.53921 3.16190 3.18339 3.59767 3.74503 3.85616 3.93272 4.04065 4.10511 4.35770 4.42750 4.49304 4.62289 4.67928 4.74796 4.90400 4.98885 5.02434 5.06216 5.37510 5.49960 5.55290 5.58055 5.83042 6.14850 6.47917 6.76506 6.87910 7.38831 8.94469 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.044412 B = 0.003271 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.315693 B = 8557.958540 C = 8950.102913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.132 3.868 3 H 0.085 0.915 4 O -0.340 6.340 5 C 0.468 3.532 6 O -0.540 6.540 7 C -0.091 4.091 8 C 0.036 3.964 9 C -0.543 4.543 10 H 0.080 0.920 11 C -0.005 4.005 12 N -0.937 5.937 13 Si 0.973 3.027 14 H -0.263 1.263 15 H -0.290 1.290 16 H -0.262 1.262 17 C 0.146 3.854 18 C -0.163 4.163 19 C -0.032 4.032 20 C -0.178 4.178 21 C 0.286 3.714 22 F -0.120 7.120 23 N -0.537 5.537 24 H 0.086 0.914 25 H 0.058 0.942 26 H 0.077 0.923 27 H 0.122 0.878 28 H 0.120 0.880 29 H -0.011 1.011 30 H -0.011 1.011 31 H 0.263 0.737 32 H 0.164 0.836 33 H 0.192 0.808 34 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.094 -13.201 20.044 24.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.076 3.924 3 H 0.103 0.897 4 O -0.257 6.257 5 C 0.313 3.687 6 O -0.429 6.429 7 C -0.128 4.128 8 C -0.001 4.001 9 C -0.581 4.581 10 H 0.098 0.902 11 C -0.203 4.203 12 N -0.577 5.577 13 Si 0.797 3.203 14 H -0.187 1.187 15 H -0.216 1.216 16 H -0.186 1.186 17 C 0.010 3.990 18 C -0.183 4.183 19 C -0.057 4.057 20 C -0.199 4.199 21 C 0.132 3.868 22 F -0.099 7.099 23 N -0.254 5.254 24 H 0.105 0.895 25 H 0.077 0.923 26 H 0.096 0.904 27 H 0.140 0.860 28 H 0.138 0.862 29 H 0.008 0.992 30 H 0.008 0.992 31 H 0.072 0.928 32 H 0.181 0.819 33 H 0.210 0.790 34 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -0.768 -11.986 20.109 23.423 hybrid contribution 0.357 0.265 -0.581 0.732 sum -0.411 -11.721 19.528 22.780 Atomic orbital electron populations 1.22036 0.91560 1.03828 1.03415 1.21049 0.95908 0.95547 0.79886 0.89678 1.86503 1.77327 1.42016 1.19837 1.24631 0.72911 0.85707 0.85416 1.90650 1.49163 1.18727 1.84348 1.21545 1.04170 1.00278 0.86821 1.18815 0.95470 0.93315 0.92480 1.21628 1.44492 0.95769 0.96192 0.90175 1.26097 0.95662 0.95257 1.03236 1.70156 1.49802 1.07006 1.30706 0.85383 0.79420 0.77916 0.77597 1.18715 1.21601 1.18605 1.20250 0.94654 0.94540 0.89606 1.22312 0.97542 0.95818 1.02639 1.22044 0.95922 0.98216 0.89495 1.22259 0.98457 0.96779 1.02392 1.18337 0.94964 0.93326 0.80176 1.91613 1.88501 1.89320 1.40469 1.66223 1.27982 1.32682 0.98477 0.89475 0.92314 0.90423 0.85992 0.86229 0.99247 0.99208 0.92828 0.81890 0.79042 0.79908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.91 9.40 71.98 0.68 -3.24 16 2 C 0.13 3.75 3.05 29.85 0.09 3.84 16 3 H 0.09 2.79 7.16 -2.38 -0.02 2.77 16 4 O -0.34 -10.04 8.34 -51.44 -0.43 -10.47 16 5 C 0.47 17.42 7.93 71.24 0.56 17.99 16 6 O -0.54 -24.61 15.20 21.96 0.33 -24.28 16 7 C -0.09 -3.41 5.75 29.85 0.17 -3.24 16 8 C 0.04 1.91 4.26 29.85 0.13 2.04 16 9 C -0.54 -29.45 9.11 25.60 0.23 -29.22 16 10 H 0.08 3.91 7.74 -2.91 -0.02 3.88 16 11 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 12 N -0.94 -57.70 13.29 21.45 0.28 -57.42 16 13 Si 0.97 42.84 29.54 68.60 2.03 44.86 16 14 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 15 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 16 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 17 C 0.15 3.59 6.18 42.53 0.26 3.86 16 18 C -0.16 -2.99 9.41 22.36 0.21 -2.78 16 19 C -0.03 -0.37 10.17 22.46 0.23 -0.14 16 20 C -0.18 -2.35 10.09 22.41 0.23 -2.13 16 21 C 0.29 6.08 8.41 84.73 0.71 6.80 16 22 F -0.12 -2.64 17.29 44.97 0.78 -1.86 16 23 N -0.54 -13.96 9.88 -184.96 -1.83 -15.79 16 24 H 0.09 2.16 7.94 -2.38 -0.02 2.14 16 25 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.12 3.91 8.14 -2.39 -0.02 3.89 16 28 H 0.12 3.91 8.14 -2.39 -0.02 3.89 16 29 H -0.01 -0.65 8.10 -2.38 -0.02 -0.67 16 30 H -0.01 -0.62 8.10 -2.39 -0.02 -0.64 16 31 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 32 H 0.16 2.72 6.99 -2.91 -0.02 2.70 16 33 H 0.19 0.63 8.06 -2.91 -0.02 0.61 16 34 H 0.18 1.11 8.06 -2.91 -0.02 1.08 16 Total: -1.00 -72.11 307.10 6.24 -65.87 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: 1.11 Total: 5.12 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: 3.97 Total: -6.03 kcal Atomic # 7 Polarization: -71.67 SS G_CDS: -1.54 Total: -73.21 kcal Atomic # 8 Polarization: -34.65 SS G_CDS: -0.09 Total: -34.74 kcal Atomic # 9 Polarization: -2.64 SS G_CDS: 0.78 Total: -1.86 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.86 kcal Total: -72.11 6.24 -65.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343930978.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.856 kcal (2) G-P(sol) polarization free energy of solvation -72.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds