Wall clock time and date at job start Mon Mar 30 2020 00:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46506 * 119.99635 * 2 1 4 4 C 1.50701 * 109.46969 * 269.99915 * 3 2 1 5 5 H 1.08005 * 120.00325 * 0.02562 * 4 3 2 6 6 C 1.37877 * 119.99928 * 180.02562 * 4 3 2 7 7 N 1.31517 * 119.99691 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00203 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.46972 * 359.97438 * 8 6 4 10 10 H 1.48492 * 109.47324 * 119.99792 * 8 6 4 11 11 H 1.48504 * 109.47184 * 240.00189 * 8 6 4 12 12 C 1.34772 * 119.99910 * 180.02562 * 2 1 3 13 13 O 1.21282 * 119.99648 * 180.02562 * 12 2 1 14 14 C 1.50704 * 120.00049 * 359.97438 * 12 2 1 15 15 N 1.46500 * 109.46842 * 180.02562 * 14 12 2 16 16 C 1.34587 * 125.74442 * 125.00490 * 15 14 12 17 17 N 1.30874 * 107.62148 * 179.97438 * 16 15 14 18 18 C 1.34549 * 107.26746 * 359.97438 * 17 16 15 19 19 C 1.47873 * 126.04221 * 180.02562 * 18 17 16 20 20 N 1.34777 * 119.99972 * 359.97438 * 19 18 17 21 21 O 1.21550 * 119.99939 * 179.97438 * 19 18 17 22 22 N 1.28845 * 125.74934 * 305.00314 * 15 14 12 23 23 H 1.09001 * 109.46990 * 270.00291 * 1 2 3 24 24 H 1.09002 * 109.47214 * 30.00022 * 1 2 3 25 25 H 1.08998 * 109.47416 * 149.99717 * 1 2 3 26 26 H 1.08994 * 109.47433 * 30.00244 * 3 2 1 27 27 H 1.09001 * 109.46696 * 150.00552 * 3 2 1 28 28 H 0.96999 * 119.99319 * 180.02562 * 7 6 4 29 29 H 1.08999 * 109.46561 * 60.00507 * 14 12 2 30 30 H 1.08995 * 109.47021 * 300.00806 * 14 12 2 31 31 H 1.07996 * 126.19000 * 0.26455 * 16 15 14 32 32 H 0.96990 * 120.00613 * 359.97438 * 20 19 18 33 33 H 0.97000 * 119.99577 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0974 1.0962 -2.2418 6 6 3.1268 2.8776 -1.6728 7 7 3.5549 3.6172 -0.6731 8 14 3.4375 3.4172 -3.4339 9 1 2.8596 2.4171 -4.3673 10 1 2.8004 4.7382 -3.6666 11 1 4.9000 3.5248 -3.6680 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1671 -0.0001 14 6 1.3853 -2.4723 -0.0005 15 7 2.3374 -3.5858 -0.0005 16 6 2.3721 -4.5906 0.8942 17 7 3.3575 -5.3845 0.5605 18 6 3.9304 -4.8682 -0.5420 19 6 5.0852 -5.4367 -1.2701 20 7 5.6602 -6.5761 -0.8369 21 8 5.5157 -4.8766 -2.2592 22 7 3.2825 -3.7681 -0.8571 23 1 -0.3633 0.0001 1.0277 24 1 -0.3634 0.8900 -0.5138 25 1 -0.3634 -0.8899 -0.5139 26 1 1.6084 2.0284 0.5138 27 1 3.1499 1.1384 0.5138 28 1 4.0317 4.4431 -0.8504 29 1 0.7584 -2.5298 -0.8903 30 1 0.7589 -2.5302 0.8896 31 1 1.7043 -4.7209 1.7329 32 1 5.3170 -7.0229 -0.0474 33 1 6.4174 -6.9492 -1.3147 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346152972.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:49 Heat of formation + Delta-G solvation = 31.960003 kcal Electronic energy + Delta-G solvation = -19879.101804 eV Core-core repulsion = 16556.703327 eV Total energy + Delta-G solvation = -3322.398477 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.41189 -39.29919 -38.94651 -35.13039 -34.45755 -33.53855 -32.66757 -31.71889 -29.11377 -27.46128 -25.89376 -24.46184 -23.04925 -22.11057 -20.61621 -18.99655 -18.21999 -17.27421 -16.95808 -16.60399 -16.28585 -15.85474 -15.28784 -15.13435 -14.80689 -14.31713 -14.08021 -13.91204 -13.23714 -12.84662 -12.36748 -12.20801 -12.04054 -11.80134 -11.27867 -10.92274 -10.65562 -10.47094 -10.41981 -10.35511 -10.20412 -9.78544 -9.71596 -9.65535 -9.06503 -8.47609 -7.84983 -6.09051 -4.13970 1.51661 2.01907 2.14873 3.02952 3.27125 3.29751 3.38690 3.42785 3.45635 3.67942 4.13564 4.36071 4.44315 4.69682 4.74681 4.85380 5.07235 5.26555 5.40334 5.70572 5.98984 6.03528 6.27942 6.42411 6.67597 6.87136 7.19631 7.29281 7.37442 7.86592 8.02159 8.13079 8.16133 8.25756 8.71508 8.91740 9.51784 10.99292 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.020925 B = 0.004990 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.765663 B = 5609.747624 C = 6572.530297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.596 5.596 3 C 0.247 3.753 4 C -0.529 4.529 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.490 3.510 13 O -0.508 6.508 14 C 0.096 3.904 15 N -0.282 5.282 16 C 0.188 3.812 17 N -0.489 5.489 18 C 0.121 3.879 19 C 0.625 3.375 20 N -0.837 5.837 21 O -0.517 6.517 22 N -0.207 5.207 23 H 0.050 0.950 24 H 0.080 0.920 25 H 0.056 0.944 26 H 0.036 0.964 27 H 0.044 0.956 28 H 0.264 0.736 29 H 0.124 0.876 30 H 0.133 0.867 31 H 0.226 0.774 32 H 0.409 0.591 33 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.125 -17.543 5.730 20.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.330 5.330 3 C 0.128 3.872 4 C -0.568 4.568 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.273 3.727 13 O -0.383 6.383 14 C -0.028 4.028 15 N -0.077 5.077 16 C -0.107 4.107 17 N -0.215 5.215 18 C -0.158 4.158 19 C 0.405 3.595 20 N -0.402 5.402 21 O -0.388 6.388 22 N -0.046 5.046 23 H 0.068 0.932 24 H 0.099 0.901 25 H 0.075 0.925 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.142 0.858 30 H 0.151 0.849 31 H 0.242 0.758 32 H 0.239 0.761 33 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -6.934 -16.737 4.744 18.727 hybrid contribution -0.122 0.222 -0.422 0.492 sum -7.057 -16.515 4.322 18.472 Atomic orbital electron populations 1.21749 0.81081 1.03082 1.00779 1.48151 1.06317 1.07383 1.71111 1.19365 0.92544 0.77404 0.97858 1.21440 1.36830 1.06387 0.92133 0.92282 1.24928 0.95126 0.96341 0.97602 1.69937 1.38248 1.14377 1.30767 0.86418 0.78266 0.78229 0.84410 1.19702 1.20930 1.20761 1.19933 0.88467 0.84653 0.79676 1.90818 1.13059 1.86194 1.48179 1.22124 0.89639 0.84169 1.06912 1.46995 1.22396 1.19459 1.18895 1.26405 0.99447 0.86796 0.98026 1.71145 1.08534 1.29011 1.12810 1.23556 1.01923 0.93867 0.96477 1.16249 0.80218 0.80453 0.82566 1.43402 1.36603 1.26399 1.33832 1.90903 1.62561 1.60021 1.25315 1.74525 0.99505 1.15724 1.14874 0.93171 0.90093 0.92527 0.94581 0.93767 0.92685 0.85811 0.84891 0.75760 0.76089 0.75972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.99 10.24 59.85 0.61 1.61 16 2 N -0.60 -11.55 2.86 -182.95 -0.52 -12.07 16 3 C 0.25 6.25 5.16 -5.19 -0.03 6.22 16 4 C -0.53 -14.92 9.39 -34.44 -0.32 -15.24 16 5 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 6 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 7 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 8 Si 0.90 22.23 29.54 -169.99 -5.02 17.21 16 9 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 12 C 0.49 9.47 7.68 -10.99 -0.08 9.38 16 13 O -0.51 -12.88 15.25 5.56 0.08 -12.80 16 14 C 0.10 1.17 5.48 -5.19 -0.03 1.14 16 15 N -0.28 -4.12 3.18 -63.76 -0.20 -4.33 16 16 C 0.19 2.14 12.57 -90.48 -1.14 1.00 16 17 N -0.49 -6.69 11.09 -12.36 -0.14 -6.83 16 18 C 0.12 2.05 7.96 -156.36 -1.24 0.81 16 19 C 0.62 10.18 8.10 -12.32 -0.10 10.08 16 20 N -0.84 -8.70 8.87 30.54 0.27 -8.43 16 21 O -0.52 -10.60 17.92 5.32 0.10 -10.50 16 22 N -0.21 -3.97 11.04 32.07 0.35 -3.61 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.08 1.13 8.07 -51.93 -0.42 0.71 16 25 H 0.06 0.52 6.44 -51.93 -0.33 0.19 16 26 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 27 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 28 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.12 1.24 7.40 -51.93 -0.38 0.86 16 30 H 0.13 0.88 8.03 -51.93 -0.42 0.46 16 31 H 0.23 1.18 8.06 -52.49 -0.42 0.76 16 32 H 0.41 3.37 8.54 -40.82 -0.35 3.02 16 33 H 0.41 3.28 8.93 -40.82 -0.36 2.92 16 LS Contribution 301.62 15.07 4.55 4.55 Total: -1.00 -40.84 301.62 -5.69 -46.53 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: -3.46 Total: -0.56 kcal Atomic # 6 Polarization: 19.11 SS G_CDS: -2.43 Total: 16.68 kcal Atomic # 7 Polarization: -61.60 SS G_CDS: 0.50 Total: -61.10 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: 0.18 Total: -23.30 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -40.84 -5.69 -46.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346152972.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.488 kcal (2) G-P(sol) polarization free energy of solvation -40.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds