Wall clock time and date at job start Mon Mar 30 2020 00:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46506 * 119.99635 * 2 1 4 4 C 1.50701 * 109.46969 * 269.99915 * 3 2 1 5 5 H 1.08005 * 120.00325 * 0.02562 * 4 3 2 6 6 C 1.37877 * 119.99928 * 180.02562 * 4 3 2 7 7 N 1.31517 * 119.99691 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00203 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.46972 * 359.97438 * 8 6 4 10 10 H 1.48492 * 109.47324 * 119.99792 * 8 6 4 11 11 H 1.48504 * 109.47184 * 240.00189 * 8 6 4 12 12 C 1.34772 * 119.99910 * 180.02562 * 2 1 3 13 13 O 1.21282 * 119.99648 * 180.02562 * 12 2 1 14 14 C 1.50704 * 120.00049 * 359.97438 * 12 2 1 15 15 N 1.46500 * 109.46842 * 180.02562 * 14 12 2 16 16 C 1.34587 * 125.74442 * 125.00490 * 15 14 12 17 17 N 1.30874 * 107.62148 * 179.97438 * 16 15 14 18 18 C 1.34549 * 107.26746 * 359.97438 * 17 16 15 19 19 C 1.47873 * 126.04221 * 180.02562 * 18 17 16 20 20 N 1.34777 * 119.99972 * 359.97438 * 19 18 17 21 21 O 1.21550 * 119.99939 * 179.97438 * 19 18 17 22 22 N 1.28845 * 125.74934 * 305.00314 * 15 14 12 23 23 H 1.09001 * 109.46990 * 270.00291 * 1 2 3 24 24 H 1.09002 * 109.47214 * 30.00022 * 1 2 3 25 25 H 1.08998 * 109.47416 * 149.99717 * 1 2 3 26 26 H 1.08994 * 109.47433 * 30.00244 * 3 2 1 27 27 H 1.09001 * 109.46696 * 150.00552 * 3 2 1 28 28 H 0.96999 * 119.99319 * 180.02562 * 7 6 4 29 29 H 1.08999 * 109.46561 * 60.00507 * 14 12 2 30 30 H 1.08995 * 109.47021 * 300.00806 * 14 12 2 31 31 H 1.07996 * 126.19000 * 0.26455 * 16 15 14 32 32 H 0.96990 * 120.00613 * 359.97438 * 20 19 18 33 33 H 0.97000 * 119.99577 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0974 1.0962 -2.2418 6 6 3.1268 2.8776 -1.6728 7 7 3.5549 3.6172 -0.6731 8 14 3.4375 3.4172 -3.4339 9 1 2.8596 2.4171 -4.3673 10 1 2.8004 4.7382 -3.6666 11 1 4.9000 3.5248 -3.6680 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1671 -0.0001 14 6 1.3853 -2.4723 -0.0005 15 7 2.3374 -3.5858 -0.0005 16 6 2.3721 -4.5906 0.8942 17 7 3.3575 -5.3845 0.5605 18 6 3.9304 -4.8682 -0.5420 19 6 5.0852 -5.4367 -1.2701 20 7 5.6602 -6.5761 -0.8369 21 8 5.5157 -4.8766 -2.2592 22 7 3.2825 -3.7681 -0.8571 23 1 -0.3633 0.0001 1.0277 24 1 -0.3634 0.8900 -0.5138 25 1 -0.3634 -0.8899 -0.5139 26 1 1.6084 2.0284 0.5138 27 1 3.1499 1.1384 0.5138 28 1 4.0317 4.4431 -0.8504 29 1 0.7584 -2.5298 -0.8903 30 1 0.7589 -2.5302 0.8896 31 1 1.7043 -4.7209 1.7329 32 1 5.3170 -7.0229 -0.0474 33 1 6.4174 -6.9492 -1.3147 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346152972.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:49 Heat of formation + Delta-G solvation = -2.955515 kcal Electronic energy + Delta-G solvation = -19880.615854 eV Core-core repulsion = 16556.703327 eV Total energy + Delta-G solvation = -3323.912527 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -44.46890 -40.72160 -40.26457 -36.72687 -35.63122 -34.82536 -34.53684 -32.82930 -30.62660 -28.91531 -27.27714 -25.80996 -24.66574 -23.27880 -21.75660 -20.39767 -19.28273 -18.77865 -18.38463 -18.12807 -17.50525 -17.15911 -16.81179 -16.49175 -16.14545 -15.67408 -15.52546 -15.08508 -14.57678 -14.34331 -13.88534 -13.56155 -13.48450 -13.14440 -12.92411 -12.82708 -12.55614 -12.25891 -11.72930 -11.67741 -11.54161 -11.50768 -11.02134 -10.84235 -10.68506 -10.41701 -9.48299 -8.27352 -6.41050 0.33942 1.03434 1.22015 1.31529 1.36008 1.46226 1.65681 2.15674 2.25060 2.33430 2.43320 3.03252 3.19039 3.42619 3.69040 3.91673 4.02568 4.17602 4.45776 4.78207 4.85552 4.96103 5.04570 5.19149 5.25443 5.50049 5.59116 5.74308 5.78619 6.01487 6.20626 6.62180 6.70759 7.00038 7.18461 7.23016 7.37391 8.79789 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.020925 B = 0.004990 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.765663 B = 5609.747624 C = 6572.530297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.602 5.602 3 C 0.261 3.739 4 C -0.543 4.543 5 H 0.051 0.949 6 C 0.009 3.991 7 N -0.927 5.927 8 Si 0.962 3.038 9 H -0.270 1.270 10 H -0.263 1.263 11 H -0.286 1.286 12 C 0.477 3.523 13 O -0.585 6.585 14 C 0.109 3.891 15 N -0.292 5.292 16 C 0.214 3.786 17 N -0.495 5.495 18 C 0.105 3.895 19 C 0.617 3.383 20 N -0.802 5.802 21 O -0.574 6.574 22 N -0.274 5.274 23 H 0.087 0.913 24 H 0.064 0.936 25 H 0.104 0.896 26 H 0.033 0.967 27 H -0.007 1.007 28 H 0.267 0.733 29 H 0.152 0.848 30 H 0.204 0.796 31 H 0.291 0.709 32 H 0.423 0.577 33 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.921 -19.399 6.628 23.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.334 5.334 3 C 0.139 3.861 4 C -0.582 4.582 5 H 0.069 0.931 6 C -0.190 4.190 7 N -0.567 5.567 8 Si 0.787 3.213 9 H -0.194 1.194 10 H -0.188 1.188 11 H -0.212 1.212 12 C 0.263 3.737 13 O -0.464 6.464 14 C -0.014 4.014 15 N -0.088 5.088 16 C -0.080 4.080 17 N -0.221 5.221 18 C -0.174 4.174 19 C 0.397 3.603 20 N -0.369 5.369 21 O -0.451 6.451 22 N -0.114 5.114 23 H 0.105 0.895 24 H 0.083 0.917 25 H 0.122 0.878 26 H 0.051 0.949 27 H 0.012 0.988 28 H 0.076 0.924 29 H 0.169 0.831 30 H 0.221 0.779 31 H 0.306 0.694 32 H 0.256 0.744 33 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -9.802 -18.649 5.680 21.821 hybrid contribution 0.698 0.742 -0.577 1.170 sum -9.105 -17.908 5.103 20.727 Atomic orbital electron populations 1.22155 0.76718 1.04710 1.03716 1.48124 1.08913 1.05659 1.70734 1.18746 0.91175 0.80432 0.95703 1.21750 1.36757 1.06368 0.93293 0.93090 1.25795 0.94930 0.96598 1.01665 1.70038 1.38975 1.14882 1.32781 0.85448 0.77754 0.78579 0.79527 1.19433 1.18814 1.21244 1.21193 0.88097 0.86790 0.77578 1.90787 1.16711 1.87600 1.51328 1.22410 0.88315 0.79040 1.11613 1.47166 1.22087 1.20560 1.18946 1.27700 0.98386 0.84404 0.97513 1.71153 1.09394 1.29733 1.11830 1.23695 1.02201 0.93882 0.97580 1.16524 0.80375 0.81301 0.82057 1.43159 1.35859 1.24268 1.33597 1.90860 1.64373 1.61975 1.27845 1.74430 1.01830 1.17298 1.17822 0.89457 0.91689 0.87776 0.94945 0.98840 0.92396 0.83052 0.77866 0.69353 0.74417 0.74439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.52 10.24 127.77 1.31 2.83 16 2 N -0.60 -22.88 2.86 -851.11 -2.43 -25.31 16 3 C 0.26 13.71 5.16 85.63 0.44 14.15 16 4 C -0.54 -31.54 9.39 25.60 0.24 -31.30 16 5 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 6 C 0.01 0.54 5.46 84.65 0.46 1.00 16 7 N -0.93 -56.68 13.29 21.45 0.28 -56.39 16 8 Si 0.96 46.39 29.54 68.60 2.03 48.42 16 9 H -0.27 -12.77 7.11 99.48 0.71 -12.07 16 10 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 11 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 12 C 0.48 18.06 7.68 87.66 0.67 18.73 16 13 O -0.58 -30.86 15.25 -3.04 -0.05 -30.91 16 14 C 0.11 2.20 5.48 85.63 0.47 2.66 16 15 N -0.29 -7.77 3.18 -355.65 -1.13 -8.90 16 16 C 0.21 3.93 12.57 180.30 2.27 6.19 16 17 N -0.49 -12.35 11.09 -193.03 -2.14 -14.49 16 18 C 0.11 3.57 7.96 137.13 1.09 4.66 16 19 C 0.62 20.53 8.10 86.79 0.70 21.23 16 20 N -0.80 -16.11 8.87 -175.58 -1.56 -17.67 16 21 O -0.57 -24.79 17.92 -3.87 -0.07 -24.86 16 22 N -0.27 -10.51 11.04 -52.44 -0.58 -11.09 16 23 H 0.09 1.34 8.14 -2.39 -0.02 1.33 16 24 H 0.06 1.68 8.07 -2.39 -0.02 1.66 16 25 H 0.10 1.34 6.44 -2.39 -0.02 1.32 16 26 H 0.03 1.69 8.07 -2.39 -0.02 1.68 16 27 H -0.01 -0.41 7.42 -2.39 -0.02 -0.42 16 28 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 29 H 0.15 2.26 7.40 -2.39 -0.02 2.25 16 30 H 0.20 1.13 8.03 -2.39 -0.02 1.11 16 31 H 0.29 0.88 8.06 -2.91 -0.02 0.86 16 32 H 0.42 6.27 8.54 -92.72 -0.79 5.48 16 33 H 0.42 6.44 8.93 -92.71 -0.83 5.61 16 Total: -1.00 -100.64 301.62 1.57 -99.07 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -0.44 Total: 1.97 kcal Atomic # 6 Polarization: 32.51 SS G_CDS: 7.66 Total: 40.16 kcal Atomic # 7 Polarization: -126.30 SS G_CDS: -7.55 Total: -133.85 kcal Atomic # 8 Polarization: -55.66 SS G_CDS: -0.12 Total: -55.77 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -100.64 1.57 -99.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346152972.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.119 kcal (2) G-P(sol) polarization free energy of solvation -100.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds