Wall clock time and date at job start Mon Mar 30 2020 00:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47474 * 90.00322 * 8 6 4 10 10 H 1.48510 * 109.47116 * 210.00055 * 8 6 4 11 11 H 1.48498 * 109.47278 * 329.99887 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 C 1.34784 * 120.00075 * 85.00024 * 12 2 1 14 14 O 1.21280 * 119.99396 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00292 * 180.02562 * 13 12 2 16 16 N 1.46502 * 109.46904 * 179.97438 * 15 13 12 17 17 C 1.34587 * 125.74507 * 125.00003 * 16 15 13 18 18 N 1.30872 * 107.62467 * 179.97438 * 17 16 15 19 19 C 1.34550 * 107.26786 * 0.02562 * 18 17 16 20 20 C 1.47867 * 126.04711 * 180.02562 * 19 18 17 21 21 N 1.34776 * 120.00410 * 359.97438 * 20 19 18 22 22 O 1.21561 * 119.99997 * 179.97438 * 20 19 18 23 23 N 1.28846 * 125.74982 * 304.69684 * 16 15 13 24 24 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 25 25 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 26 26 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 27 27 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 28 28 H 0.96996 * 120.00792 * 265.00493 * 12 2 1 29 29 H 1.08994 * 109.47030 * 299.99967 * 15 13 12 30 30 H 1.08993 * 109.47006 * 59.99994 * 15 13 12 31 31 H 1.08001 * 126.19040 * 359.96448 * 17 16 15 32 32 H 0.97000 * 119.99431 * 359.97438 * 21 20 19 33 33 H 0.96994 * 120.00455 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.6305 -0.5440 4.4119 10 1 1.3445 -0.9489 5.1124 11 1 2.4880 -2.5653 3.7122 12 7 2.0183 -0.6907 -1.1961 13 6 2.1471 -0.0184 -2.3572 14 8 1.8590 1.1585 -2.4115 15 6 2.6488 -0.7290 -3.5877 16 7 2.6976 0.2123 -4.7093 17 6 3.7782 0.4779 -5.4664 18 7 3.4266 1.3659 -6.3612 19 6 2.1274 1.6482 -6.1546 20 6 1.3095 2.6019 -6.9344 21 7 1.8609 3.2819 -7.9591 22 8 0.1397 2.7725 -6.6513 23 7 1.7119 0.9212 -5.1406 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 0.7082 1.1609 3.4844 28 1 2.2490 -1.6318 -1.1526 29 1 3.6479 -1.1215 -3.3986 30 1 1.9760 -1.5507 -3.8325 31 1 4.7583 0.0380 -5.3555 32 1 2.7945 3.1459 -8.1847 33 1 1.3246 3.9077 -8.4704 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346171211.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:04 Heat of formation + Delta-G solvation = 20.649402 kcal Electronic energy + Delta-G solvation = -19671.495820 eV Core-core repulsion = 16348.606879 eV Total energy + Delta-G solvation = -3322.888941 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.44757 -39.27872 -38.93120 -35.13147 -34.40032 -33.56108 -32.55285 -31.75631 -29.65077 -27.78685 -25.33012 -24.47624 -22.63859 -21.33307 -20.60189 -19.68767 -18.30712 -17.74849 -17.16222 -16.54093 -16.16966 -15.63037 -15.28113 -15.11712 -14.85201 -14.32278 -14.07683 -13.93497 -13.12801 -12.79379 -12.46601 -11.92270 -11.75529 -11.16226 -11.04513 -10.83075 -10.52610 -10.46354 -10.40843 -10.38435 -10.30439 -9.83126 -9.73968 -9.18286 -9.11982 -8.63936 -8.10558 -6.19382 -4.30185 1.46624 1.98374 2.11346 3.01476 3.19495 3.22518 3.26600 3.27925 3.40983 3.73203 4.11476 4.27960 4.40752 4.67922 4.85697 5.02718 5.12511 5.18373 5.95378 6.24616 6.39850 6.63211 6.75239 6.89399 7.06572 7.15130 7.28733 7.42115 7.58613 7.81078 7.97757 8.06586 8.20854 8.43541 8.64484 8.88748 9.37296 10.86456 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.039517 B = 0.003793 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.392867 B = 7380.271001 C = 7801.777259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.267 3.733 3 H 0.049 0.951 4 C -0.538 4.538 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.881 5.881 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.273 1.273 12 N -0.702 5.702 13 C 0.487 3.513 14 O -0.523 6.523 15 C 0.094 3.906 16 N -0.281 5.281 17 C 0.190 3.810 18 N -0.489 5.489 19 C 0.121 3.879 20 C 0.625 3.375 21 N -0.836 5.836 22 O -0.519 6.519 23 N -0.210 5.210 24 H 0.017 0.983 25 H 0.091 0.909 26 H 0.027 0.973 27 H 0.266 0.734 28 H 0.391 0.609 29 H 0.136 0.864 30 H 0.125 0.875 31 H 0.227 0.773 32 H 0.410 0.590 33 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.655 -4.209 -16.398 18.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.166 3.834 3 H 0.067 0.933 4 C -0.576 4.576 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.518 5.518 8 Si 0.731 3.269 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.351 5.351 13 C 0.268 3.732 14 O -0.398 6.398 15 C -0.031 4.031 16 N -0.076 5.076 17 C -0.105 4.105 18 N -0.215 5.215 19 C -0.158 4.158 20 C 0.406 3.594 21 N -0.402 5.402 22 O -0.390 6.390 23 N -0.049 5.049 24 H 0.036 0.964 25 H 0.110 0.890 26 H 0.047 0.953 27 H 0.076 0.924 28 H 0.223 0.777 29 H 0.154 0.846 30 H 0.142 0.858 31 H 0.243 0.757 32 H 0.240 0.760 33 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 6.119 -3.053 -15.944 17.348 hybrid contribution 1.027 -0.992 0.834 1.653 sum 7.146 -4.045 -15.110 17.197 Atomic orbital electron populations 1.22087 0.98168 0.99268 1.01191 1.18808 0.91233 0.93936 0.79472 0.93298 1.21174 1.32851 1.13399 0.90190 0.91956 1.24902 0.94718 0.94943 0.99138 1.69903 1.35468 1.22359 1.24069 0.86422 0.78620 0.79766 0.82114 1.20535 1.21015 1.19808 1.46477 1.64947 1.13601 1.10044 1.20078 0.80502 0.88115 0.84527 1.90806 1.49512 1.15425 1.84103 1.22090 1.06493 0.90618 0.83882 1.46945 1.07070 1.29782 1.23851 1.26430 0.95698 0.97889 0.90463 1.71153 1.11083 1.14777 1.24478 1.23543 0.90567 1.03583 0.98118 1.16245 0.85054 0.78776 0.79336 1.43406 1.16684 1.45857 1.34224 1.90896 1.15700 1.64795 1.67646 1.74475 1.14901 1.05366 1.10193 0.96428 0.89029 0.95334 0.92427 0.77669 0.84635 0.85763 0.75703 0.76043 0.75951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.26 37.16 0.34 -3.33 16 2 C 0.27 6.54 2.56 -69.08 -0.18 6.36 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.01 16 4 C -0.54 -13.64 8.73 -34.44 -0.30 -13.95 16 5 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -24.51 11.32 55.43 0.63 -23.88 16 8 Si 0.90 20.03 29.54 -169.99 -5.02 15.01 16 9 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 12 N -0.70 -13.11 5.07 -54.93 -0.28 -13.39 16 13 C 0.49 8.80 7.81 -10.98 -0.09 8.71 16 14 O -0.52 -12.45 15.35 5.56 0.09 -12.37 16 15 C 0.09 1.05 6.93 -5.19 -0.04 1.02 16 16 N -0.28 -3.90 3.17 -63.77 -0.20 -4.10 16 17 C 0.19 2.09 12.57 -90.48 -1.14 0.95 16 18 N -0.49 -6.48 11.09 -12.36 -0.14 -6.62 16 19 C 0.12 1.97 7.96 -156.35 -1.24 0.73 16 20 C 0.63 9.72 8.10 -12.32 -0.10 9.62 16 21 N -0.84 -8.22 8.87 30.54 0.27 -7.95 16 22 O -0.52 -10.14 17.92 5.31 0.10 -10.05 16 23 N -0.21 -3.80 11.06 32.07 0.35 -3.45 16 24 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 26 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.39 5.81 8.54 -40.82 -0.35 5.46 16 29 H 0.14 0.82 8.06 -51.93 -0.42 0.40 16 30 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.23 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.41 3.19 8.54 -40.82 -0.35 2.84 16 33 H 0.41 3.05 8.93 -40.82 -0.36 2.69 16 LS Contribution 300.17 15.07 4.52 4.52 Total: -1.00 -37.83 300.17 -5.93 -43.76 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -3.42 Total: 6.73 kcal Atomic # 6 Polarization: 14.60 SS G_CDS: -2.83 Total: 11.77 kcal Atomic # 7 Polarization: -60.02 SS G_CDS: 0.64 Total: -59.39 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: 0.18 Total: -22.41 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -37.83 -5.93 -43.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346171211.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.411 kcal (2) G-P(sol) polarization free energy of solvation -37.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds