Wall clock time and date at job start Mon Mar 30 2020 00:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47474 * 90.00322 * 8 6 4 10 10 H 1.48510 * 109.47116 * 210.00055 * 8 6 4 11 11 H 1.48498 * 109.47278 * 329.99887 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 C 1.34784 * 120.00075 * 85.00024 * 12 2 1 14 14 O 1.21280 * 119.99396 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00292 * 180.02562 * 13 12 2 16 16 N 1.46502 * 109.46904 * 179.97438 * 15 13 12 17 17 C 1.34587 * 125.74507 * 125.00003 * 16 15 13 18 18 N 1.30872 * 107.62467 * 179.97438 * 17 16 15 19 19 C 1.34550 * 107.26786 * 0.02562 * 18 17 16 20 20 C 1.47867 * 126.04711 * 180.02562 * 19 18 17 21 21 N 1.34776 * 120.00410 * 359.97438 * 20 19 18 22 22 O 1.21561 * 119.99997 * 179.97438 * 20 19 18 23 23 N 1.28846 * 125.74982 * 304.69684 * 16 15 13 24 24 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 25 25 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 26 26 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 27 27 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 28 28 H 0.96996 * 120.00792 * 265.00493 * 12 2 1 29 29 H 1.08994 * 109.47030 * 299.99967 * 15 13 12 30 30 H 1.08993 * 109.47006 * 59.99994 * 15 13 12 31 31 H 1.08001 * 126.19040 * 359.96448 * 17 16 15 32 32 H 0.97000 * 119.99431 * 359.97438 * 21 20 19 33 33 H 0.96994 * 120.00455 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.6305 -0.5440 4.4119 10 1 1.3445 -0.9489 5.1124 11 1 2.4880 -2.5653 3.7122 12 7 2.0183 -0.6907 -1.1961 13 6 2.1471 -0.0184 -2.3572 14 8 1.8590 1.1585 -2.4115 15 6 2.6488 -0.7290 -3.5877 16 7 2.6976 0.2123 -4.7093 17 6 3.7782 0.4779 -5.4664 18 7 3.4266 1.3659 -6.3612 19 6 2.1274 1.6482 -6.1546 20 6 1.3095 2.6019 -6.9344 21 7 1.8609 3.2819 -7.9591 22 8 0.1397 2.7725 -6.6513 23 7 1.7119 0.9212 -5.1406 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 0.7082 1.1609 3.4844 28 1 2.2490 -1.6318 -1.1526 29 1 3.6479 -1.1215 -3.3986 30 1 1.9760 -1.5507 -3.8325 31 1 4.7583 0.0380 -5.3555 32 1 2.7945 3.1459 -8.1847 33 1 1.3246 3.9077 -8.4704 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346171211.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:04 Heat of formation + Delta-G solvation = -12.023999 kcal Electronic energy + Delta-G solvation = -19672.912645 eV Core-core repulsion = 16348.606879 eV Total energy + Delta-G solvation = -3324.305766 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.46350 -40.66446 -40.24963 -36.85345 -35.57126 -34.62816 -34.35438 -32.83498 -31.31122 -29.05842 -27.35485 -25.63054 -23.77633 -22.84315 -21.74709 -21.27524 -19.40322 -19.15391 -18.20248 -17.89804 -17.46457 -17.08848 -16.88656 -16.28896 -16.08783 -15.62652 -15.50443 -15.07494 -14.68460 -14.43212 -13.95049 -13.57679 -13.05305 -12.93000 -12.83580 -12.76376 -12.28260 -12.13335 -11.67364 -11.55872 -11.51537 -11.13831 -11.04944 -10.84968 -10.62594 -10.43203 -9.83070 -8.17970 -6.36438 0.33781 1.03678 1.22081 1.46652 1.47035 1.57866 1.66286 2.18355 2.26161 2.37468 2.55580 3.13135 3.21021 3.57865 3.82486 3.95586 4.12292 4.21704 4.71144 4.87065 4.88482 5.06852 5.25700 5.38909 5.56477 5.57842 5.65180 5.74840 5.87143 6.06684 6.20762 6.72120 6.85519 7.00116 7.18514 7.31354 7.49937 8.88498 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.039517 B = 0.003793 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.392867 B = 7380.271001 C = 7801.777259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.274 3.726 3 H -0.006 1.006 4 C -0.543 4.543 5 H 0.084 0.916 6 C 0.010 3.990 7 N -0.922 5.922 8 Si 0.975 3.025 9 H -0.278 1.278 10 H -0.290 1.290 11 H -0.254 1.254 12 N -0.694 5.694 13 C 0.480 3.520 14 O -0.589 6.589 15 C 0.106 3.894 16 N -0.291 5.291 17 C 0.213 3.787 18 N -0.496 5.496 19 C 0.105 3.895 20 C 0.617 3.383 21 N -0.803 5.803 22 O -0.574 6.574 23 N -0.271 5.271 24 H 0.003 0.997 25 H 0.063 0.937 26 H 0.045 0.955 27 H 0.264 0.736 28 H 0.414 0.586 29 H 0.202 0.798 30 H 0.157 0.843 31 H 0.289 0.711 32 H 0.423 0.577 33 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.496 -6.988 -17.216 21.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.170 3.830 3 H 0.012 0.988 4 C -0.581 4.581 5 H 0.102 0.898 6 C -0.190 4.190 7 N -0.560 5.560 8 Si 0.800 3.200 9 H -0.204 1.204 10 H -0.216 1.216 11 H -0.178 1.178 12 N -0.345 5.345 13 C 0.265 3.735 14 O -0.469 6.469 15 C -0.017 4.017 16 N -0.086 5.086 17 C -0.081 4.081 18 N -0.222 5.222 19 C -0.174 4.174 20 C 0.398 3.602 21 N -0.369 5.369 22 O -0.450 6.450 23 N -0.111 5.111 24 H 0.023 0.977 25 H 0.082 0.918 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.250 0.750 29 H 0.219 0.781 30 H 0.174 0.826 31 H 0.304 0.696 32 H 0.255 0.745 33 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 9.024 -5.884 -16.826 19.979 hybrid contribution 0.222 -0.097 1.021 1.049 sum 9.245 -5.981 -15.805 19.262 Atomic orbital electron populations 1.21917 0.98805 0.99561 0.99154 1.18297 0.90723 0.91889 0.82114 0.98794 1.21566 1.32530 1.13693 0.90329 0.89835 1.25877 0.94865 0.95567 1.02662 1.70080 1.37100 1.24229 1.24596 0.85298 0.77579 0.79405 0.77758 1.20360 1.21553 1.17767 1.46090 1.64875 1.14514 1.09011 1.21245 0.78807 0.87511 0.85965 1.90790 1.52023 1.18726 1.85334 1.22363 1.10610 0.89322 0.79367 1.47136 1.07040 1.29937 1.24528 1.27667 0.96614 0.95734 0.88126 1.71159 1.09506 1.15848 1.25675 1.23702 0.91854 1.03770 0.98107 1.16504 0.84513 0.79069 0.80085 1.43175 1.17315 1.44278 1.32171 1.90856 1.17897 1.66780 1.69469 1.74388 1.17702 1.07348 1.11643 0.97742 0.91784 0.93623 0.92676 0.74977 0.78062 0.82573 0.69634 0.74451 0.74429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.92 9.26 71.98 0.67 -6.26 16 2 C 0.27 13.67 2.56 44.25 0.11 13.78 16 3 H -0.01 -0.36 7.58 -2.39 -0.02 -0.37 16 4 C -0.54 -27.20 8.73 25.60 0.22 -26.98 16 5 H 0.08 3.74 7.74 -2.91 -0.02 3.71 16 6 C 0.01 0.53 5.30 84.66 0.45 0.98 16 7 N -0.92 -52.81 11.32 21.45 0.24 -52.57 16 8 Si 0.98 40.54 29.54 68.60 2.03 42.57 16 9 H -0.28 -11.40 7.11 99.48 0.71 -10.70 16 10 H -0.29 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16 12 N -0.69 -25.08 5.07 -446.09 -2.26 -27.34 16 13 C 0.48 16.84 7.81 87.66 0.68 17.53 16 14 O -0.59 -28.96 15.35 -3.03 -0.05 -29.01 16 15 C 0.11 1.95 6.93 85.63 0.59 2.55 16 16 N -0.29 -7.31 3.17 -355.66 -1.13 -8.44 16 17 C 0.21 3.80 12.57 180.30 2.27 6.07 16 18 N -0.50 -12.01 11.09 -193.03 -2.14 -14.15 16 19 C 0.10 3.39 7.96 137.13 1.09 4.48 16 20 C 0.62 19.60 8.10 86.79 0.70 20.30 16 21 N -0.80 -15.25 8.87 -175.58 -1.56 -16.81 16 22 O -0.57 -23.60 17.92 -3.91 -0.07 -23.67 16 23 N -0.27 -9.79 11.06 -52.44 -0.58 -10.37 16 24 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 25 H 0.06 3.62 6.07 -2.39 -0.01 3.61 16 26 H 0.04 2.10 8.14 -2.38 -0.02 2.08 16 27 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 28 H 0.41 10.99 8.54 -92.71 -0.79 10.20 16 29 H 0.20 1.01 8.06 -2.39 -0.02 0.99 16 30 H 0.16 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.29 0.95 8.06 -2.91 -0.02 0.93 16 32 H 0.42 5.93 8.54 -92.71 -0.79 5.14 16 33 H 0.42 5.98 8.93 -92.71 -0.83 5.16 16 Total: -1.00 -91.40 300.17 0.06 -91.34 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -1.22 Total: 16.01 kcal Atomic # 6 Polarization: 25.65 SS G_CDS: 6.79 Total: 32.45 kcal Atomic # 7 Polarization: -122.25 SS G_CDS: -7.43 Total: -129.68 kcal Atomic # 8 Polarization: -52.57 SS G_CDS: -0.12 Total: -52.68 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.57 kcal Total: -91.40 0.06 -91.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346171211.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.314 kcal (2) G-P(sol) polarization free energy of solvation -91.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds