Wall clock time and date at job start Mon Mar 30 2020 00:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47554 * 2 1 4 4 C 1.50704 * 109.46880 * 239.99060 * 2 1 3 5 5 H 1.07999 * 120.00001 * 240.00003 * 4 2 1 6 6 C 1.37880 * 119.99710 * 60.01001 * 4 2 1 7 7 N 1.31512 * 120.00009 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99929 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47383 * 59.99549 * 8 6 4 10 10 H 1.48495 * 109.47206 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.46866 * 299.99437 * 8 6 4 12 12 N 1.46503 * 109.46701 * 120.00031 * 2 1 3 13 13 C 1.34782 * 119.99472 * 274.99270 * 12 2 1 14 14 O 1.21280 * 120.00397 * 0.02562 * 13 12 2 15 15 C 1.50702 * 119.99874 * 180.02562 * 13 12 2 16 16 N 1.46493 * 109.47180 * 180.02562 * 15 13 12 17 17 C 1.34583 * 125.74870 * 125.00097 * 16 15 13 18 18 N 1.30874 * 107.62758 * 180.02562 * 17 16 15 19 19 C 1.34552 * 107.26325 * 0.02562 * 18 17 16 20 20 C 1.47879 * 126.04476 * 179.97438 * 19 18 17 21 21 N 1.34775 * 119.99681 * 0.02562 * 20 19 18 22 22 O 1.21550 * 119.99848 * 180.02562 * 20 19 18 23 23 N 1.28855 * 125.74874 * 305.03744 * 16 15 13 24 24 H 1.09003 * 109.46544 * 60.00049 * 1 2 3 25 25 H 1.08994 * 109.47554 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46640 * 300.00668 * 1 2 3 27 27 H 0.96996 * 120.00152 * 180.02562 * 7 6 4 28 28 H 0.96999 * 120.00380 * 95.00137 * 12 2 1 29 29 H 1.09005 * 109.47082 * 60.00220 * 15 13 12 30 30 H 1.09005 * 109.47174 * 300.00445 * 15 13 12 31 31 H 1.07997 * 126.19018 * 0.03773 * 17 16 15 32 32 H 0.97004 * 120.00280 * 0.02562 * 21 20 19 33 33 H 0.97009 * 119.99637 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 -1.2304 5 1 2.6532 -1.5887 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 0.9430 0.8295 -2.6035 8 14 2.3225 -1.1200 -4.0078 9 1 1.8279 -2.5202 -4.0080 10 1 1.8270 -0.4204 -5.2204 11 1 3.8075 -1.1194 -4.0076 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0181 2.3572 14 8 1.8583 1.1585 2.4117 15 6 2.6498 -0.7283 3.5876 16 7 2.6985 0.2129 4.7091 17 6 2.0988 0.0459 5.9023 18 7 2.3729 1.0958 6.6339 19 6 3.1424 1.9112 5.8899 20 6 3.6893 3.2180 6.3141 21 7 3.4276 3.6891 7.5494 22 8 4.3749 3.8672 5.5486 23 7 3.3222 1.3404 4.7191 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5140 0.8900 27 1 0.7084 1.1607 -3.4845 28 1 2.2490 -1.6318 1.1527 29 1 3.6492 -1.1202 3.3980 30 1 1.9775 -1.5507 3.8327 31 1 1.4998 -0.8013 6.2019 32 1 2.8807 3.1708 8.1604 33 1 3.7861 4.5466 7.8275 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346171212.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:07 Heat of formation + Delta-G solvation = 20.904210 kcal Electronic energy + Delta-G solvation = -19668.056097 eV Core-core repulsion = 16345.178206 eV Total energy + Delta-G solvation = -3322.877892 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.44715 -39.27680 -38.92985 -35.13432 -34.39864 -33.55742 -32.54723 -31.75579 -29.65886 -27.79354 -25.33827 -24.47256 -22.64536 -21.33066 -20.61004 -19.68052 -18.30056 -17.73782 -17.16692 -16.57371 -16.16579 -15.58540 -15.31528 -14.98553 -14.93828 -14.37266 -14.02200 -13.95672 -13.14902 -12.74406 -12.47981 -12.01301 -11.69515 -11.18160 -11.01322 -10.85064 -10.51334 -10.47583 -10.41073 -10.40166 -10.30762 -9.82706 -9.73851 -9.17606 -9.13876 -8.63550 -8.10570 -6.18522 -4.29091 1.47089 1.98345 2.11467 3.01162 3.21775 3.23221 3.27833 3.28475 3.41353 3.73450 4.11191 4.28766 4.40553 4.67637 4.86517 5.02262 5.13914 5.18394 5.95473 6.24530 6.39928 6.63596 6.71439 6.82959 7.03195 7.15557 7.27090 7.40898 7.58801 7.80211 7.98068 8.05570 8.21299 8.43508 8.65164 8.88881 9.38295 10.87427 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.035141 B = 0.003825 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.601335 B = 7317.753114 C = 7634.436617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.266 3.734 3 H 0.051 0.949 4 C -0.538 4.538 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.904 3.096 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.701 5.701 13 C 0.487 3.513 14 O -0.522 6.522 15 C 0.094 3.906 16 N -0.281 5.281 17 C 0.190 3.810 18 N -0.489 5.489 19 C 0.121 3.879 20 C 0.625 3.375 21 N -0.836 5.836 22 O -0.518 6.518 23 N -0.209 5.209 24 H 0.092 0.908 25 H 0.028 0.972 26 H 0.013 0.987 27 H 0.266 0.734 28 H 0.391 0.609 29 H 0.125 0.875 30 H 0.135 0.865 31 H 0.226 0.774 32 H 0.410 0.590 33 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.375 -5.821 18.000 18.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.165 3.835 3 H 0.068 0.932 4 C -0.576 4.576 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.519 5.519 8 Si 0.731 3.269 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.351 5.351 13 C 0.268 3.732 14 O -0.398 6.398 15 C -0.031 4.031 16 N -0.077 5.077 17 C -0.105 4.105 18 N -0.215 5.215 19 C -0.158 4.158 20 C 0.406 3.594 21 N -0.402 5.402 22 O -0.390 6.390 23 N -0.048 5.048 24 H 0.110 0.890 25 H 0.047 0.953 26 H 0.032 0.968 27 H 0.076 0.924 28 H 0.223 0.777 29 H 0.143 0.857 30 H 0.153 0.847 31 H 0.243 0.757 32 H 0.239 0.761 33 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 1.777 -4.158 17.038 17.628 hybrid contribution -0.025 -1.277 -0.547 1.390 sum 1.753 -5.435 16.491 17.452 Atomic orbital electron populations 1.22085 0.98277 0.99156 1.01027 1.18813 0.91076 0.94110 0.79518 0.93166 1.21136 1.32891 1.13414 0.90192 0.91992 1.24894 0.94719 0.94915 0.99131 1.69884 1.35532 1.22290 1.24184 0.86473 0.79226 0.79494 0.81702 1.20134 1.21079 1.20098 1.46472 1.64941 1.13599 1.10048 1.20076 0.80392 0.88051 0.84694 1.90806 1.49553 1.15171 1.84294 1.22094 1.06275 0.90067 0.84662 1.46951 1.34104 1.13913 1.12693 1.26420 1.00616 1.00383 0.83130 1.71154 1.16111 1.02725 1.31499 1.23553 1.03887 0.99151 0.89238 1.16246 0.79175 0.81991 0.82018 1.43410 1.56363 1.25275 1.15143 1.90896 1.37724 1.57647 1.52701 1.74490 1.14927 0.95239 1.20172 0.88977 0.95334 0.96762 0.92374 0.77672 0.85691 0.84705 0.75731 0.76052 0.75950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 9.26 37.16 0.34 -3.18 16 2 C 0.27 6.52 2.56 -69.08 -0.18 6.35 16 3 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 4 C -0.54 -13.77 8.73 -34.44 -0.30 -14.07 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.59 11.32 55.43 0.63 -23.96 16 8 Si 0.90 20.23 29.54 -169.99 -5.02 15.21 16 9 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 10 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 12 N -0.70 -13.11 5.07 -54.93 -0.28 -13.39 16 13 C 0.49 8.80 7.81 -10.98 -0.09 8.72 16 14 O -0.52 -12.46 15.33 5.56 0.09 -12.37 16 15 C 0.09 1.05 6.93 -5.20 -0.04 1.02 16 16 N -0.28 -3.90 3.18 -63.76 -0.20 -4.11 16 17 C 0.19 2.07 12.57 -90.48 -1.14 0.93 16 18 N -0.49 -6.47 11.09 -12.36 -0.14 -6.61 16 19 C 0.12 1.97 7.96 -156.35 -1.24 0.73 16 20 C 0.63 9.77 8.10 -12.31 -0.10 9.67 16 21 N -0.84 -8.26 8.87 30.54 0.27 -7.99 16 22 O -0.52 -10.21 17.92 5.32 0.10 -10.11 16 23 N -0.21 -3.81 11.04 32.08 0.35 -3.46 16 24 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 25 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.39 5.80 8.54 -40.82 -0.35 5.45 16 29 H 0.13 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.14 0.79 8.06 -51.93 -0.42 0.37 16 31 H 0.23 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.41 3.19 8.54 -40.82 -0.35 2.84 16 33 H 0.41 3.08 8.93 -40.82 -0.36 2.71 16 LS Contribution 300.15 15.07 4.52 4.52 Total: -1.00 -37.97 300.15 -5.93 -43.90 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -3.42 Total: 6.52 kcal Atomic # 6 Polarization: 14.68 SS G_CDS: -2.83 Total: 11.85 kcal Atomic # 7 Polarization: -60.15 SS G_CDS: 0.63 Total: -59.52 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: 0.18 Total: -22.48 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -37.97 -5.93 -43.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346171212.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.806 kcal (2) G-P(sol) polarization free energy of solvation -37.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds