Wall clock time and date at job start Mon Mar 30 2020 00:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47554 * 2 1 4 4 C 1.50704 * 109.46880 * 239.99060 * 2 1 3 5 5 H 1.07999 * 120.00001 * 240.00003 * 4 2 1 6 6 C 1.37880 * 119.99710 * 60.01001 * 4 2 1 7 7 N 1.31512 * 120.00009 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99929 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47383 * 59.99549 * 8 6 4 10 10 H 1.48495 * 109.47206 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.46866 * 299.99437 * 8 6 4 12 12 N 1.46503 * 109.46701 * 120.00031 * 2 1 3 13 13 C 1.34782 * 119.99472 * 274.99270 * 12 2 1 14 14 O 1.21280 * 120.00397 * 0.02562 * 13 12 2 15 15 C 1.50702 * 119.99874 * 180.02562 * 13 12 2 16 16 N 1.46493 * 109.47180 * 180.02562 * 15 13 12 17 17 C 1.34583 * 125.74870 * 125.00097 * 16 15 13 18 18 N 1.30874 * 107.62758 * 180.02562 * 17 16 15 19 19 C 1.34552 * 107.26325 * 0.02562 * 18 17 16 20 20 C 1.47879 * 126.04476 * 179.97438 * 19 18 17 21 21 N 1.34775 * 119.99681 * 0.02562 * 20 19 18 22 22 O 1.21550 * 119.99848 * 180.02562 * 20 19 18 23 23 N 1.28855 * 125.74874 * 305.03744 * 16 15 13 24 24 H 1.09003 * 109.46544 * 60.00049 * 1 2 3 25 25 H 1.08994 * 109.47554 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46640 * 300.00668 * 1 2 3 27 27 H 0.96996 * 120.00152 * 180.02562 * 7 6 4 28 28 H 0.96999 * 120.00380 * 95.00137 * 12 2 1 29 29 H 1.09005 * 109.47082 * 60.00220 * 15 13 12 30 30 H 1.09005 * 109.47174 * 300.00445 * 15 13 12 31 31 H 1.07997 * 126.19018 * 0.03773 * 17 16 15 32 32 H 0.97004 * 120.00280 * 0.02562 * 21 20 19 33 33 H 0.97009 * 119.99637 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 -1.2304 5 1 2.6532 -1.5887 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 0.9430 0.8295 -2.6035 8 14 2.3225 -1.1200 -4.0078 9 1 1.8279 -2.5202 -4.0080 10 1 1.8270 -0.4204 -5.2204 11 1 3.8075 -1.1194 -4.0076 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0181 2.3572 14 8 1.8583 1.1585 2.4117 15 6 2.6498 -0.7283 3.5876 16 7 2.6985 0.2129 4.7091 17 6 2.0988 0.0459 5.9023 18 7 2.3729 1.0958 6.6339 19 6 3.1424 1.9112 5.8899 20 6 3.6893 3.2180 6.3141 21 7 3.4276 3.6891 7.5494 22 8 4.3749 3.8672 5.5486 23 7 3.3222 1.3404 4.7191 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5140 0.8900 27 1 0.7084 1.1607 -3.4845 28 1 2.2490 -1.6318 1.1527 29 1 3.6492 -1.1202 3.3980 30 1 1.9775 -1.5507 3.8327 31 1 1.4998 -0.8013 6.2019 32 1 2.8807 3.1708 8.1604 33 1 3.7861 4.5466 7.8275 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346171212.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:07 Heat of formation + Delta-G solvation = -11.991718 kcal Electronic energy + Delta-G solvation = -19669.482572 eV Core-core repulsion = 16345.178206 eV Total energy + Delta-G solvation = -3324.304366 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -44.46381 -40.66355 -40.25261 -36.85118 -35.57086 -34.62942 -34.35737 -32.83591 -31.30795 -29.05368 -27.35025 -25.62832 -23.78391 -22.83094 -21.75726 -21.26287 -19.39222 -19.15479 -18.22031 -17.92370 -17.47610 -17.02845 -16.89500 -16.29004 -16.06008 -15.75678 -15.42224 -15.09063 -14.68793 -14.40334 -13.92754 -13.59874 -13.02221 -12.99184 -12.81401 -12.71904 -12.27387 -12.17378 -11.67568 -11.55643 -11.51402 -11.14444 -11.04904 -10.85153 -10.61698 -10.44308 -9.82278 -8.18568 -6.36815 0.33880 1.03820 1.22268 1.45304 1.47672 1.55218 1.66285 2.18564 2.26122 2.37274 2.55094 3.12484 3.20904 3.58002 3.82292 3.95500 4.12546 4.21856 4.73267 4.87000 4.88952 5.06888 5.25694 5.40259 5.56324 5.57720 5.66724 5.74812 5.88258 6.07861 6.20789 6.71387 6.85637 7.00228 7.18504 7.30925 7.49900 8.87536 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.035141 B = 0.003825 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.601335 B = 7317.753114 C = 7634.436617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.272 3.728 3 H -0.011 1.011 4 C -0.546 4.546 5 H 0.080 0.920 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.974 3.026 9 H -0.259 1.259 10 H -0.290 1.290 11 H -0.272 1.272 12 N -0.694 5.694 13 C 0.480 3.520 14 O -0.589 6.589 15 C 0.106 3.894 16 N -0.291 5.291 17 C 0.213 3.787 18 N -0.496 5.496 19 C 0.105 3.895 20 C 0.617 3.383 21 N -0.803 5.803 22 O -0.574 6.574 23 N -0.272 5.272 24 H 0.062 0.938 25 H 0.049 0.951 26 H 0.009 0.991 27 H 0.264 0.736 28 H 0.413 0.587 29 H 0.155 0.845 30 H 0.204 0.796 31 H 0.289 0.711 32 H 0.423 0.577 33 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.222 -9.321 19.612 21.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.168 3.832 3 H 0.007 0.993 4 C -0.585 4.585 5 H 0.098 0.902 6 C -0.188 4.188 7 N -0.559 5.559 8 Si 0.798 3.202 9 H -0.183 1.183 10 H -0.216 1.216 11 H -0.197 1.197 12 N -0.345 5.345 13 C 0.265 3.735 14 O -0.469 6.469 15 C -0.017 4.017 16 N -0.086 5.086 17 C -0.081 4.081 18 N -0.222 5.222 19 C -0.174 4.174 20 C 0.398 3.602 21 N -0.369 5.369 22 O -0.450 6.450 23 N -0.112 5.112 24 H 0.081 0.919 25 H 0.068 0.932 26 H 0.028 0.972 27 H 0.074 0.926 28 H 0.250 0.750 29 H 0.172 0.828 30 H 0.221 0.779 31 H 0.304 0.696 32 H 0.256 0.744 33 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 1.623 -7.725 18.729 20.325 hybrid contribution -0.027 -0.195 -0.944 0.965 sum 1.596 -7.921 17.784 19.534 Atomic orbital electron populations 1.21875 0.98041 0.99817 0.99327 1.18311 0.91242 0.91621 0.82020 0.99324 1.21545 1.32649 1.13707 0.90555 0.90150 1.25848 0.94877 0.95550 1.02568 1.70061 1.37077 1.24061 1.24657 0.85374 0.78558 0.78860 0.77405 1.18309 1.21623 1.19707 1.46091 1.64896 1.14503 1.08996 1.21241 0.78645 0.87456 0.86193 1.90790 1.52092 1.18409 1.85565 1.22369 1.09176 0.89550 0.80582 1.47138 1.34187 1.13241 1.14080 1.27673 0.98403 1.00651 0.81358 1.71161 1.16131 1.03193 1.31684 1.23701 1.04606 0.99654 0.89459 1.16511 0.78781 0.81977 0.82922 1.43176 1.54916 1.25515 1.13320 1.90855 1.40473 1.59164 1.54549 1.74402 1.17450 0.97633 1.21704 0.91941 0.93212 0.97196 0.92643 0.74992 0.82754 0.77896 0.69558 0.74435 0.74431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.43 9.26 71.98 0.67 -5.77 16 2 C 0.27 13.60 2.56 44.25 0.11 13.71 16 3 H -0.01 -0.69 7.58 -2.39 -0.02 -0.71 16 4 C -0.55 -27.83 8.73 25.60 0.22 -27.61 16 5 H 0.08 3.70 7.74 -2.91 -0.02 3.67 16 6 C 0.01 0.61 5.30 84.66 0.45 1.06 16 7 N -0.92 -52.93 11.32 21.45 0.24 -52.69 16 8 Si 0.97 41.19 29.54 68.60 2.03 43.22 16 9 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 10 H -0.29 -12.42 7.11 99.48 0.71 -11.72 16 11 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 12 N -0.69 -25.12 5.07 -446.08 -2.26 -27.38 16 13 C 0.48 16.86 7.81 87.66 0.68 17.54 16 14 O -0.59 -28.97 15.33 -3.03 -0.05 -29.02 16 15 C 0.11 1.95 6.93 85.63 0.59 2.55 16 16 N -0.29 -7.32 3.18 -355.65 -1.13 -8.45 16 17 C 0.21 3.76 12.57 180.30 2.27 6.03 16 18 N -0.50 -11.95 11.09 -193.03 -2.14 -14.09 16 19 C 0.10 3.41 7.96 137.13 1.09 4.50 16 20 C 0.62 19.72 8.10 86.80 0.70 20.43 16 21 N -0.80 -15.33 8.87 -175.58 -1.56 -16.89 16 22 O -0.57 -23.85 17.92 -3.87 -0.07 -23.91 16 23 N -0.27 -9.92 11.04 -52.43 -0.58 -10.50 16 24 H 0.06 3.43 6.07 -2.39 -0.01 3.41 16 25 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 28 H 0.41 11.03 8.54 -92.71 -0.79 10.23 16 29 H 0.15 2.02 8.14 -2.38 -0.02 2.00 16 30 H 0.20 0.92 8.06 -2.38 -0.02 0.90 16 31 H 0.29 0.83 8.06 -2.91 -0.02 0.81 16 32 H 0.42 5.93 8.54 -92.71 -0.79 5.14 16 33 H 0.42 6.03 8.93 -92.70 -0.83 5.21 16 Total: -1.00 -92.11 300.15 0.06 -92.06 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -1.22 Total: 15.21 kcal Atomic # 6 Polarization: 25.65 SS G_CDS: 6.79 Total: 32.44 kcal Atomic # 7 Polarization: -122.57 SS G_CDS: -7.43 Total: -130.00 kcal Atomic # 8 Polarization: -52.82 SS G_CDS: -0.12 Total: -52.93 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Total: -92.11 0.06 -92.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346171212.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.065 kcal (2) G-P(sol) polarization free energy of solvation -92.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds