Wall clock time and date at job start Mon Mar 30 2020 00:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47202 * 2 1 4 4 C 1.50700 * 109.47360 * 239.99776 * 2 1 3 5 5 H 1.07997 * 120.00158 * 273.03884 * 4 2 1 6 6 C 1.37876 * 119.99892 * 93.03616 * 4 2 1 7 7 N 1.31515 * 120.00284 * 181.10587 * 6 4 2 8 8 Si 1.86801 * 119.99984 * 1.11153 * 6 4 2 9 9 H 1.48494 * 109.47245 * 90.36556 * 8 6 4 10 10 H 1.48502 * 109.47043 * 210.36500 * 8 6 4 11 11 H 1.48495 * 109.47135 * 330.35999 * 8 6 4 12 12 N 1.46505 * 109.47074 * 119.99735 * 2 1 3 13 13 C 1.46496 * 119.99811 * 60.00384 * 12 2 1 14 14 C 1.34776 * 119.99662 * 239.99923 * 12 2 1 15 15 O 1.21568 * 120.00308 * 355.41820 * 14 12 2 16 16 C 1.47741 * 119.99596 * 175.41888 * 14 12 2 17 17 C 1.39641 * 120.09788 * 30.68632 * 16 14 12 18 18 C 1.37888 * 119.98141 * 179.79012 * 17 16 14 19 19 C 1.38538 * 120.17988 * 0.46710 * 18 17 16 20 20 F 1.35094 * 119.90226 * 179.76674 * 19 18 17 21 21 C 1.39083 * 120.19487 * 359.78634 * 19 18 17 22 22 O 1.35959 * 119.99200 * 180.02562 * 21 19 18 23 23 C 1.38322 * 120.01252 * 359.97438 * 21 19 18 24 24 H 1.09003 * 109.46669 * 53.29637 * 1 2 3 25 25 H 1.09003 * 109.47109 * 293.29786 * 1 2 3 26 26 H 1.09001 * 109.46947 * 173.29520 * 1 2 3 27 27 H 0.96992 * 120.00554 * 179.97438 * 7 6 4 28 28 H 1.08992 * 109.47173 * 85.09016 * 13 12 2 29 29 H 1.08999 * 109.46796 * 205.08856 * 13 12 2 30 30 H 1.09000 * 109.47037 * 325.08286 * 13 12 2 31 31 H 1.07999 * 120.00936 * 0.02562 * 17 16 14 32 32 H 1.07997 * 119.91139 * 180.20917 * 18 17 16 33 33 H 0.96705 * 113.99678 * 269.97485 * 22 21 19 34 34 H 1.08004 * 120.08443 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1657 -1.7821 -1.2186 6 6 2.3218 0.0077 -2.3712 7 7 2.7395 -0.6147 -3.4519 8 14 2.1209 1.8649 -2.3819 9 1 3.3953 2.5031 -1.9653 10 1 1.7656 2.3164 -3.7513 11 1 1.0418 2.2514 -1.4379 12 7 2.0183 -0.6906 1.1962 13 6 1.6645 -2.0931 1.4281 14 6 2.7932 -0.0355 2.0833 15 8 3.1557 1.1013 1.8507 16 6 3.2020 -0.6990 3.3385 17 6 3.3764 -2.0841 3.3737 18 6 3.7622 -2.7004 4.5453 19 6 3.9683 -1.9503 5.6917 20 9 4.3416 -2.5605 6.8377 21 6 3.7915 -0.5710 5.6663 22 8 3.9954 0.1612 6.7936 23 6 3.4095 0.0562 4.4941 24 1 -0.3633 0.6142 -0.8240 25 1 -0.3633 0.4065 0.9439 26 1 -0.3633 -1.0207 -0.1200 27 1 2.9428 -0.1095 -4.2545 28 1 2.3666 -2.7372 0.8988 29 1 1.7089 -2.3073 2.4959 30 1 0.6546 -2.2783 1.0621 31 1 3.2129 -2.6719 2.4826 32 1 3.9000 -3.7712 4.5704 33 1 3.2055 0.2687 7.3410 34 1 3.2723 1.1272 4.4730 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001443566413.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:15 Heat of formation + Delta-G solvation = -73.558056 kcal Electronic energy + Delta-G solvation = -20198.780667 eV Core-core repulsion = 16819.593871 eV Total energy + Delta-G solvation = -3379.186796 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.07828 -40.30157 -38.71910 -36.73735 -35.63537 -32.87294 -31.21408 -30.75295 -29.20231 -26.64147 -25.32588 -23.88997 -22.99106 -21.18618 -19.31884 -18.24505 -17.79160 -17.13041 -16.91423 -16.22979 -15.70946 -15.54819 -14.91335 -14.66978 -14.35292 -14.12143 -13.82685 -13.47888 -12.88089 -12.77401 -12.49691 -12.39325 -12.23924 -11.90248 -11.60378 -11.16077 -11.14366 -10.86887 -10.60953 -10.50012 -9.84669 -9.40741 -9.23975 -9.14174 -8.68955 -8.67077 -7.80742 -6.21276 -4.24179 0.63975 0.94930 2.90295 3.26882 3.35408 3.41061 3.48175 3.70937 3.83296 4.13246 4.34354 4.56057 4.72922 4.92161 5.08927 5.18450 5.44302 5.54167 5.70187 5.84350 5.86509 5.92957 6.09813 6.15050 6.24696 6.31564 6.45463 6.49853 6.84708 6.99309 7.33932 7.35376 7.55310 8.01201 8.39659 8.74333 8.80197 9.40612 10.90577 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.033509 B = 0.004958 C = 0.004683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.390166 B = 5646.650116 C = 5977.293328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.223 3.777 3 H 0.066 0.934 4 C -0.526 4.526 5 H 0.078 0.922 6 C 0.080 3.920 7 N -0.891 5.891 8 Si 0.873 3.127 9 H -0.271 1.271 10 H -0.286 1.286 11 H -0.262 1.262 12 N -0.577 5.577 13 C 0.063 3.937 14 C 0.545 3.455 15 O -0.546 6.546 16 C -0.112 4.112 17 C -0.082 4.082 18 C -0.148 4.148 19 C 0.087 3.913 20 F -0.133 7.133 21 C 0.063 3.937 22 O -0.486 6.486 23 C -0.065 4.065 24 H 0.057 0.943 25 H 0.027 0.973 26 H 0.052 0.948 27 H 0.267 0.733 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.163 0.837 32 H 0.145 0.855 33 H 0.390 0.610 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.450 -4.044 16.926 17.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.123 3.877 3 H 0.083 0.917 4 C -0.564 4.564 5 H 0.097 0.903 6 C -0.124 4.124 7 N -0.527 5.527 8 Si 0.700 3.300 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.186 1.186 12 N -0.307 5.307 13 C -0.080 4.080 14 C 0.332 3.668 15 O -0.425 6.425 16 C -0.116 4.116 17 C -0.100 4.100 18 C -0.167 4.167 19 C 0.066 3.934 20 F -0.112 7.112 21 C 0.017 3.983 22 O -0.295 6.295 23 C -0.085 4.085 24 H 0.076 0.924 25 H 0.046 0.954 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.180 0.820 32 H 0.163 0.837 33 H 0.246 0.754 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.640 -3.410 16.393 16.824 hybrid contribution -0.403 0.665 0.236 0.812 sum -2.043 -2.745 16.629 16.977 Atomic orbital electron populations 1.22259 0.98201 1.01097 0.99226 1.19375 0.90796 0.94986 0.82585 0.91661 1.21086 1.45151 0.96044 0.94159 0.90350 1.24943 0.93586 0.98490 0.95367 1.69876 1.44111 1.36274 1.02457 0.86909 0.79841 0.86007 0.77218 1.19692 1.21232 1.18603 1.48223 1.48269 1.11690 1.22554 1.22325 1.01911 0.83259 1.00482 1.18116 0.79654 0.86023 0.83044 1.90753 1.55598 1.18644 1.77516 1.20150 1.02758 0.93797 0.94856 1.22058 0.95021 0.93971 0.98944 1.21071 1.03084 1.01089 0.91481 1.18329 1.01794 0.90147 0.83084 1.91493 1.88733 1.83130 1.47821 1.18234 1.04062 0.87734 0.88278 1.84911 1.38546 1.72524 1.33545 1.21401 0.95406 1.01334 0.90311 0.92422 0.95397 0.92943 0.92326 0.91884 0.90766 0.91051 0.81962 0.83712 0.75385 0.83415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 8.87 37.16 0.33 -2.67 16 2 C 0.22 5.19 2.18 -69.08 -0.15 5.04 16 3 H 0.07 1.68 4.24 -51.93 -0.22 1.46 16 4 C -0.53 -14.05 8.83 -34.44 -0.30 -14.35 16 5 H 0.08 2.20 7.52 -52.49 -0.39 1.81 16 6 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 7 N -0.89 -26.31 13.96 55.43 0.77 -25.54 16 8 Si 0.87 21.67 26.64 -169.99 -4.53 17.14 16 9 H -0.27 -6.94 7.11 56.52 0.40 -6.54 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.26 -6.19 6.18 56.52 0.35 -5.84 16 12 N -0.58 -11.47 2.75 -176.42 -0.49 -11.96 16 13 C 0.06 0.95 7.95 59.84 0.48 1.42 16 14 C 0.54 10.88 7.45 -12.38 -0.09 10.79 16 15 O -0.55 -13.04 16.07 5.31 0.09 -12.95 16 16 C -0.11 -1.73 5.51 -104.98 -0.58 -2.31 16 17 C -0.08 -1.02 7.44 -39.19 -0.29 -1.31 16 18 C -0.15 -1.61 10.00 -39.60 -0.40 -2.01 16 19 C 0.09 1.04 7.31 -39.16 -0.29 0.76 16 20 F -0.13 -1.63 17.10 2.25 0.04 -1.59 16 21 C 0.06 0.78 6.70 -39.24 -0.26 0.52 16 22 O -0.49 -5.41 13.36 -19.61 -0.26 -5.67 16 23 C -0.07 -0.91 9.53 -39.04 -0.37 -1.29 16 24 H 0.06 1.18 7.24 -51.93 -0.38 0.80 16 25 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.97 6.99 -51.93 -0.36 0.61 16 27 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.06 0.94 7.33 -51.93 -0.38 0.56 16 29 H 0.07 0.87 4.58 -51.93 -0.24 0.63 16 30 H 0.07 1.03 6.60 -51.93 -0.34 0.69 16 31 H 0.16 1.85 4.67 -52.49 -0.24 1.61 16 32 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.39 2.32 9.06 45.56 0.41 2.73 16 34 H 0.15 2.08 7.94 -52.48 -0.42 1.66 16 LS Contribution 288.22 15.07 4.34 4.34 Total: -1.00 -33.25 288.22 -4.66 -37.91 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -2.60 Total: 1.58 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -2.03 Total: -3.25 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: 0.29 Total: -37.50 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -0.18 Total: -18.62 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.59 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.53 Total: 17.14 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -33.25 -4.66 -37.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001443566413.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.651 kcal (2) G-P(sol) polarization free energy of solvation -33.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds