Wall clock time and date at job start Mon Mar 30 2020 00:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47202 * 2 1 4 4 C 1.50700 * 109.47360 * 239.99776 * 2 1 3 5 5 H 1.07997 * 120.00158 * 273.03884 * 4 2 1 6 6 C 1.37876 * 119.99892 * 93.03616 * 4 2 1 7 7 N 1.31515 * 120.00284 * 181.10587 * 6 4 2 8 8 Si 1.86801 * 119.99984 * 1.11153 * 6 4 2 9 9 H 1.48494 * 109.47245 * 90.36556 * 8 6 4 10 10 H 1.48502 * 109.47043 * 210.36500 * 8 6 4 11 11 H 1.48495 * 109.47135 * 330.35999 * 8 6 4 12 12 N 1.46505 * 109.47074 * 119.99735 * 2 1 3 13 13 C 1.46496 * 119.99811 * 60.00384 * 12 2 1 14 14 C 1.34776 * 119.99662 * 239.99923 * 12 2 1 15 15 O 1.21568 * 120.00308 * 355.41820 * 14 12 2 16 16 C 1.47741 * 119.99596 * 175.41888 * 14 12 2 17 17 C 1.39641 * 120.09788 * 30.68632 * 16 14 12 18 18 C 1.37888 * 119.98141 * 179.79012 * 17 16 14 19 19 C 1.38538 * 120.17988 * 0.46710 * 18 17 16 20 20 F 1.35094 * 119.90226 * 179.76674 * 19 18 17 21 21 C 1.39083 * 120.19487 * 359.78634 * 19 18 17 22 22 O 1.35959 * 119.99200 * 180.02562 * 21 19 18 23 23 C 1.38322 * 120.01252 * 359.97438 * 21 19 18 24 24 H 1.09003 * 109.46669 * 53.29637 * 1 2 3 25 25 H 1.09003 * 109.47109 * 293.29786 * 1 2 3 26 26 H 1.09001 * 109.46947 * 173.29520 * 1 2 3 27 27 H 0.96992 * 120.00554 * 179.97438 * 7 6 4 28 28 H 1.08992 * 109.47173 * 85.09016 * 13 12 2 29 29 H 1.08999 * 109.46796 * 205.08856 * 13 12 2 30 30 H 1.09000 * 109.47037 * 325.08286 * 13 12 2 31 31 H 1.07999 * 120.00936 * 0.02562 * 17 16 14 32 32 H 1.07997 * 119.91139 * 180.20917 * 18 17 16 33 33 H 0.96705 * 113.99678 * 269.97485 * 22 21 19 34 34 H 1.08004 * 120.08443 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1657 -1.7821 -1.2186 6 6 2.3218 0.0077 -2.3712 7 7 2.7395 -0.6147 -3.4519 8 14 2.1209 1.8649 -2.3819 9 1 3.3953 2.5031 -1.9653 10 1 1.7656 2.3164 -3.7513 11 1 1.0418 2.2514 -1.4379 12 7 2.0183 -0.6906 1.1962 13 6 1.6645 -2.0931 1.4281 14 6 2.7932 -0.0355 2.0833 15 8 3.1557 1.1013 1.8507 16 6 3.2020 -0.6990 3.3385 17 6 3.3764 -2.0841 3.3737 18 6 3.7622 -2.7004 4.5453 19 6 3.9683 -1.9503 5.6917 20 9 4.3416 -2.5605 6.8377 21 6 3.7915 -0.5710 5.6663 22 8 3.9954 0.1612 6.7936 23 6 3.4095 0.0562 4.4941 24 1 -0.3633 0.6142 -0.8240 25 1 -0.3633 0.4065 0.9439 26 1 -0.3633 -1.0207 -0.1200 27 1 2.9428 -0.1095 -4.2545 28 1 2.3666 -2.7372 0.8988 29 1 1.7089 -2.3073 2.4959 30 1 0.6546 -2.2783 1.0621 31 1 3.2129 -2.6719 2.4826 32 1 3.9000 -3.7712 4.5704 33 1 3.2055 0.2687 7.3410 34 1 3.2723 1.1272 4.4730 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001443566413.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:14 Heat of formation + Delta-G solvation = -97.986910 kcal Electronic energy + Delta-G solvation = -20199.839981 eV Core-core repulsion = 16819.593871 eV Total energy + Delta-G solvation = -3380.246111 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.02598 -41.56883 -39.92470 -37.76182 -37.29823 -34.77927 -32.78279 -31.84960 -30.44500 -27.97614 -27.26591 -25.14881 -23.98543 -22.64708 -20.70487 -19.55089 -19.07689 -18.65121 -18.11026 -17.48007 -17.07606 -16.82730 -16.40849 -15.90024 -15.71078 -15.23021 -15.00007 -14.82105 -14.57068 -14.20531 -14.06755 -13.93878 -13.45026 -13.23910 -13.09192 -12.89916 -12.62119 -12.30617 -12.20432 -11.82459 -11.73440 -11.26223 -10.86585 -10.80846 -10.13183 -9.72871 -9.41013 -8.36716 -6.40710 -0.42377 -0.00386 1.27310 1.34652 1.41416 1.65976 2.11442 2.28358 2.45549 2.83589 3.04966 3.21731 3.49677 3.63337 3.94280 4.12181 4.31719 4.44146 4.57922 4.66026 4.73417 4.74982 4.78830 4.86522 4.91610 4.96763 5.12125 5.14120 5.36166 5.53083 5.55571 5.75589 6.14413 6.62473 6.64345 6.66518 7.17834 7.29524 8.78414 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.033509 B = 0.004958 C = 0.004683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.390166 B = 5646.650116 C = 5977.293328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.220 3.780 3 H 0.039 0.961 4 C -0.518 4.518 5 H 0.057 0.943 6 C 0.029 3.971 7 N -0.934 5.934 8 Si 0.921 3.079 9 H -0.288 1.288 10 H -0.276 1.276 11 H -0.245 1.245 12 N -0.585 5.585 13 C 0.058 3.942 14 C 0.538 3.462 15 O -0.597 6.597 16 C -0.128 4.128 17 C -0.078 4.078 18 C -0.128 4.128 19 C 0.088 3.912 20 F -0.131 7.131 21 C 0.071 3.929 22 O -0.495 6.495 23 C -0.073 4.073 24 H 0.051 0.949 25 H 0.049 0.951 26 H 0.067 0.933 27 H 0.268 0.732 28 H 0.063 0.937 29 H 0.113 0.887 30 H 0.078 0.922 31 H 0.175 0.825 32 H 0.181 0.819 33 H 0.414 0.586 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.142 -5.274 19.222 20.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.118 3.882 3 H 0.057 0.943 4 C -0.557 4.557 5 H 0.076 0.924 6 C -0.170 4.170 7 N -0.573 5.573 8 Si 0.747 3.253 9 H -0.214 1.214 10 H -0.202 1.202 11 H -0.169 1.169 12 N -0.313 5.313 13 C -0.084 4.084 14 C 0.328 3.672 15 O -0.481 6.481 16 C -0.132 4.132 17 C -0.096 4.096 18 C -0.146 4.146 19 C 0.068 3.932 20 F -0.110 7.110 21 C 0.025 3.975 22 O -0.309 6.309 23 C -0.093 4.093 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.130 0.870 30 H 0.097 0.903 31 H 0.192 0.808 32 H 0.198 0.802 33 H 0.273 0.727 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.375 -4.671 18.729 19.449 hybrid contribution -0.138 0.966 -0.307 1.023 sum -2.513 -3.705 18.422 18.958 Atomic orbital electron populations 1.22111 0.95454 1.02203 1.00196 1.19184 0.92799 0.93497 0.82691 0.94311 1.21339 1.43742 0.95259 0.95334 0.92441 1.25598 0.94048 1.01999 0.95382 1.69975 1.46495 1.37658 1.03207 0.86139 0.79440 0.81876 0.77857 1.21414 1.20166 1.16885 1.48151 1.48173 1.13506 1.21504 1.22630 1.02236 0.80345 1.03149 1.18787 0.78631 0.85556 0.84226 1.90712 1.57488 1.21037 1.78832 1.19800 1.05336 0.95060 0.92980 1.22113 0.94835 0.92529 1.00074 1.21350 1.00738 1.02636 0.89925 1.18449 1.01311 0.89968 0.83491 1.91507 1.88649 1.82995 1.47835 1.18156 1.03131 0.88108 0.88139 1.84854 1.40312 1.72395 1.33289 1.21319 0.96275 1.00983 0.90698 0.93032 0.93204 0.91421 0.92297 0.91846 0.86970 0.90310 0.80801 0.80151 0.72666 0.84394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.45 8.87 71.98 0.64 -4.81 16 2 C 0.22 10.20 2.18 44.24 0.10 10.30 16 3 H 0.04 2.02 4.24 -2.39 -0.01 2.01 16 4 C -0.52 -27.95 8.83 25.60 0.23 -27.73 16 5 H 0.06 3.28 7.52 -2.91 -0.02 3.25 16 6 C 0.03 1.67 5.47 84.65 0.46 2.13 16 7 N -0.93 -56.44 13.96 21.45 0.30 -56.14 16 8 Si 0.92 45.42 26.64 68.60 1.83 47.25 16 9 H -0.29 -14.82 7.11 99.48 0.71 -14.11 16 10 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 11 H -0.25 -11.30 6.18 99.48 0.61 -10.69 16 12 N -0.58 -22.79 2.75 -830.34 -2.29 -25.08 16 13 C 0.06 1.60 7.95 127.77 1.02 2.62 16 14 C 0.54 21.46 7.45 86.76 0.65 22.10 16 15 O -0.60 -29.31 16.07 -3.93 -0.06 -29.38 16 16 C -0.13 -3.78 5.51 -20.10 -0.11 -3.89 16 17 C -0.08 -1.69 7.44 22.53 0.17 -1.52 16 18 C -0.13 -2.23 10.00 22.26 0.22 -2.01 16 19 C 0.09 1.81 7.31 22.54 0.16 1.97 16 20 F -0.13 -2.73 17.10 44.97 0.77 -1.96 16 21 C 0.07 1.60 6.70 22.49 0.15 1.75 16 22 O -0.50 -9.86 13.36 -93.09 -1.24 -11.11 16 23 C -0.07 -1.97 9.53 22.62 0.22 -1.76 16 24 H 0.05 2.03 7.24 -2.39 -0.02 2.01 16 25 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.07 2.37 6.99 -2.39 -0.02 2.36 16 27 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 28 H 0.06 1.77 7.33 -2.39 -0.02 1.75 16 29 H 0.11 2.26 4.58 -2.39 -0.01 2.25 16 30 H 0.08 2.08 6.60 -2.39 -0.02 2.06 16 31 H 0.18 3.39 4.67 -2.91 -0.01 3.38 16 32 H 0.18 1.91 8.06 -2.91 -0.02 1.88 16 33 H 0.41 3.83 9.06 -74.05 -0.67 3.16 16 34 H 0.14 3.92 7.94 -2.91 -0.02 3.89 16 Total: -1.00 -73.76 288.22 3.60 -70.17 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: 0.40 Total: 7.09 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: 3.90 Total: -0.84 kcal Atomic # 7 Polarization: -79.23 SS G_CDS: -1.99 Total: -81.22 kcal Atomic # 8 Polarization: -39.18 SS G_CDS: -1.31 Total: -40.48 kcal Atomic # 9 Polarization: -2.73 SS G_CDS: 0.77 Total: -1.96 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.83 Total: 47.25 kcal Total: -73.76 3.60 -70.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001443566413.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.820 kcal (2) G-P(sol) polarization free energy of solvation -73.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds