Wall clock time and date at job start Mon Mar 30 2020 00:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08995 * 109.47442 * 2 1 4 4 C 1.50709 * 109.47333 * 119.99888 * 2 1 3 5 5 H 1.08002 * 119.99925 * 119.99598 * 4 2 1 6 6 C 1.37874 * 119.99459 * 299.72678 * 4 2 1 7 7 N 1.31513 * 120.00418 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99401 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47302 * 59.99928 * 8 6 4 10 10 H 1.48503 * 109.47101 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47195 * 299.99680 * 8 6 4 12 12 N 1.46507 * 109.47376 * 239.99932 * 2 1 3 13 13 C 1.46499 * 119.99897 * 300.00179 * 12 2 1 14 14 C 1.34773 * 119.99759 * 120.00238 * 12 2 1 15 15 O 1.21561 * 120.00457 * 6.96965 * 14 12 2 16 16 C 1.47737 * 119.99468 * 186.97956 * 14 12 2 17 17 C 1.39649 * 120.10130 * 20.34238 * 16 14 12 18 18 C 1.37888 * 119.98189 * 179.79294 * 17 16 14 19 19 C 1.38530 * 120.17995 * 0.46624 * 18 17 16 20 20 F 1.35096 * 119.90383 * 179.76787 * 19 18 17 21 21 C 1.39083 * 120.19466 * 359.78630 * 19 18 17 22 22 O 1.35966 * 119.98980 * 180.02562 * 21 19 18 23 23 C 1.38311 * 120.01940 * 359.97438 * 21 19 18 24 24 H 1.09000 * 109.47139 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47151 * 300.00094 * 1 2 3 26 26 H 1.09003 * 109.46953 * 60.00228 * 1 2 3 27 27 H 0.97003 * 119.99590 * 180.02562 * 7 6 4 28 28 H 1.08994 * 109.47435 * 86.41810 * 13 12 2 29 29 H 1.09000 * 109.47133 * 206.42122 * 13 12 2 30 30 H 1.09008 * 109.47122 * 326.41934 * 13 12 2 31 31 H 1.08005 * 120.00395 * 0.02562 * 17 16 14 32 32 H 1.08000 * 119.90987 * 180.20896 * 18 17 16 33 33 H 0.96698 * 114.00297 * 269.98119 * 22 21 19 34 34 H 1.08001 * 120.09401 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.7039 -0.2360 2.4827 7 7 0.9526 0.8367 2.6033 8 14 2.3260 -1.1170 4.0079 9 1 3.8109 -1.1234 4.0048 10 1 1.8361 -0.4133 5.2204 11 1 1.8250 -2.5148 4.0111 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4280 14 6 2.7932 -0.0356 -2.0833 15 8 3.1916 1.0849 -1.8314 16 6 3.1583 -0.6794 -3.3619 17 6 2.3978 -1.7428 -3.8528 18 6 2.7382 -2.3391 -5.0486 19 6 3.8392 -1.8926 -5.7609 20 9 4.1704 -2.4840 -6.9295 21 6 4.6049 -0.8375 -5.2763 22 8 5.6844 -0.4022 -5.9790 23 6 4.2680 -0.2302 -4.0802 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.7219 1.1706 3.4844 28 1 0.7056 -2.1456 -1.9437 29 1 2.4326 -2.5653 -2.0404 30 1 1.5917 -2.6124 -0.4723 31 1 1.5410 -2.0956 -3.2978 32 1 2.1472 -3.1592 -5.4288 33 1 6.5105 -0.8485 -5.7476 34 1 4.8615 0.5895 -3.7029 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001443566419.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:18 Heat of formation + Delta-G solvation = -73.123772 kcal Electronic energy + Delta-G solvation = -20117.182949 eV Core-core repulsion = 16738.014985 eV Total energy + Delta-G solvation = -3379.167964 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.05609 -40.23353 -38.63269 -36.66635 -35.54532 -33.04114 -30.95311 -30.45024 -28.73850 -26.59528 -25.28145 -23.82235 -22.92120 -21.20775 -19.37039 -18.16467 -17.74077 -16.95496 -16.54812 -16.10714 -15.66822 -15.50072 -14.82639 -14.59449 -14.39226 -14.06852 -13.84544 -13.36084 -12.81967 -12.72612 -12.54332 -12.10637 -11.96189 -11.61615 -11.16349 -11.02299 -10.90125 -10.78832 -10.67045 -10.33197 -10.20590 -9.30311 -9.15792 -9.10347 -8.67272 -8.47657 -7.71373 -6.11858 -4.20217 0.66269 0.99358 2.94233 3.25205 3.30841 3.31904 3.57362 3.85272 3.91348 4.16648 4.35794 4.58228 4.81252 4.95694 5.13453 5.19810 5.49580 5.58910 5.75195 5.79086 5.89746 5.97087 6.18814 6.26580 6.48748 6.68450 6.76204 6.97822 7.31029 7.37952 7.45130 7.64996 7.94179 8.12442 8.39218 8.74575 8.91158 9.46172 10.93602 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.034176 B = 0.004489 C = 0.004412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.103168 B = 6236.006579 C = 6344.238517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.257 3.743 3 H 0.065 0.935 4 C -0.528 4.528 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.583 5.583 13 C 0.068 3.932 14 C 0.544 3.456 15 O -0.542 6.542 16 C -0.114 4.114 17 C -0.089 4.089 18 C -0.150 4.150 19 C 0.086 3.914 20 F -0.134 7.134 21 C 0.061 3.939 22 O -0.486 6.486 23 C -0.063 4.063 24 H 0.031 0.969 25 H 0.094 0.906 26 H 0.012 0.988 27 H 0.265 0.735 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.166 0.834 32 H 0.144 0.856 33 H 0.391 0.609 34 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.276 -8.316 -13.142 15.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.158 3.842 3 H 0.083 0.917 4 C -0.567 4.567 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.313 5.313 13 C -0.075 4.075 14 C 0.330 3.670 15 O -0.421 6.421 16 C -0.117 4.117 17 C -0.107 4.107 18 C -0.169 4.169 19 C 0.066 3.934 20 F -0.112 7.112 21 C 0.016 3.984 22 O -0.296 6.296 23 C -0.082 4.082 24 H 0.050 0.950 25 H 0.113 0.887 26 H 0.031 0.969 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.183 0.817 32 H 0.161 0.839 33 H 0.247 0.753 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.980 -7.243 -13.125 15.285 hybrid contribution 0.725 -0.985 0.787 1.455 sum 3.705 -8.229 -12.338 15.286 Atomic orbital electron populations 1.22096 0.97926 0.99534 1.00961 1.19014 0.90915 0.94571 0.79724 0.91714 1.21249 1.32151 1.13057 0.90221 0.92214 1.24885 0.94886 0.94934 0.98976 1.69866 1.36385 1.22255 1.23976 0.86538 0.79257 0.79544 0.81940 1.20235 1.21140 1.20215 1.48156 1.48305 1.11385 1.23456 1.22225 0.98593 0.83733 1.02981 1.18076 0.79731 0.85972 0.83174 1.90753 1.54050 1.19591 1.77703 1.20235 0.96902 0.97543 0.97050 1.22352 1.00304 0.93630 0.94455 1.21065 0.97146 1.02856 0.95850 1.18346 0.97430 0.93689 0.83933 1.91489 1.92115 1.82573 1.45066 1.18250 0.92119 0.95232 0.92821 1.84900 1.17511 1.64371 1.62812 1.21467 0.96519 0.98767 0.91458 0.95024 0.88707 0.96902 0.92549 0.92995 0.91320 0.89894 0.81660 0.83859 0.75340 0.83233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 8.97 37.15 0.33 -3.04 16 2 C 0.26 6.38 2.63 -69.08 -0.18 6.20 16 3 H 0.07 1.87 6.92 -51.93 -0.36 1.51 16 4 C -0.53 -13.86 8.01 -34.44 -0.28 -14.14 16 5 H 0.06 1.53 7.27 -52.49 -0.38 1.15 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -24.58 11.34 55.43 0.63 -23.95 16 8 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 9 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 10 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 12 N -0.58 -11.94 2.75 -176.42 -0.49 -12.43 16 13 C 0.07 1.04 7.67 59.85 0.46 1.50 16 14 C 0.54 11.14 7.52 -12.38 -0.09 11.05 16 15 O -0.54 -13.28 15.88 5.31 0.08 -13.20 16 16 C -0.11 -1.79 5.57 -104.98 -0.58 -2.38 16 17 C -0.09 -1.11 7.61 -39.18 -0.30 -1.41 16 18 C -0.15 -1.65 10.00 -39.60 -0.40 -2.04 16 19 C 0.09 1.06 7.31 -39.16 -0.29 0.78 16 20 F -0.13 -1.67 17.10 2.25 0.04 -1.63 16 21 C 0.06 0.80 6.70 -39.24 -0.26 0.53 16 22 O -0.49 -5.63 13.36 -19.63 -0.26 -5.90 16 23 C -0.06 -0.92 9.52 -39.04 -0.37 -1.29 16 24 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 25 H 0.09 2.41 6.09 -51.93 -0.32 2.10 16 26 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 28 H 0.05 0.67 6.99 -51.93 -0.36 0.31 16 29 H 0.07 0.88 5.26 -51.93 -0.27 0.60 16 30 H 0.08 1.36 6.98 -51.92 -0.36 1.00 16 31 H 0.17 1.82 4.02 -52.48 -0.21 1.61 16 32 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 33 H 0.39 2.56 9.06 45.56 0.41 2.97 16 34 H 0.15 2.25 7.79 -52.49 -0.41 1.84 16 LS Contribution 290.68 15.07 4.38 4.38 Total: -1.00 -31.66 290.68 -5.33 -36.99 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -2.64 Total: 2.76 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -2.05 Total: -2.58 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: 0.14 Total: -36.38 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.18 Total: -19.09 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.66 -5.33 -36.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001443566419.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.135 kcal (2) G-P(sol) polarization free energy of solvation -31.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds