Wall clock time and date at job start Mon Mar 30 2020 00:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 239.99664 * 2 1 3 5 5 H 1.07994 * 120.00496 * 239.99942 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00100 * 4 2 1 7 7 N 1.31518 * 120.00216 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00016 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47195 * 90.00222 * 8 6 4 10 10 H 1.48504 * 109.47636 * 210.00509 * 8 6 4 11 11 H 1.48508 * 109.47108 * 330.00152 * 8 6 4 12 12 N 1.46500 * 109.46998 * 119.99945 * 2 1 3 13 13 C 1.34779 * 119.99741 * 275.00368 * 12 2 1 14 14 O 1.21279 * 120.00369 * 359.97438 * 13 12 2 15 15 C 1.50708 * 119.99762 * 179.97438 * 13 12 2 16 16 C 1.50697 * 109.47045 * 179.97438 * 15 13 12 17 17 C 1.38261 * 119.93554 * 269.72716 * 16 15 13 18 18 C 1.38190 * 120.09278 * 179.76850 * 17 16 15 19 19 C 1.38653 * 119.96854 * 0.50644 * 18 17 16 20 20 O 1.35953 * 120.06550 * 179.72370 * 19 18 17 21 21 C 1.38906 * 119.87489 * 359.74793 * 19 18 17 22 22 F 1.35107 * 120.04810 * 179.97438 * 21 19 18 23 23 C 1.38251 * 119.93675 * 90.00262 * 16 15 13 24 24 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 25 25 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 26 26 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 27 27 H 0.96999 * 120.00239 * 180.02562 * 7 6 4 28 28 H 0.96997 * 120.00110 * 94.99637 * 12 2 1 29 29 H 1.08994 * 109.47136 * 300.00021 * 15 13 12 30 30 H 1.09002 * 109.46457 * 59.99935 * 15 13 12 31 31 H 1.08001 * 119.95528 * 0.02562 * 17 16 15 32 32 H 1.08003 * 120.01375 * 180.25368 * 18 17 16 33 33 H 0.96703 * 114.00282 * 270.02342 * 20 19 18 34 34 H 1.08000 * 119.98868 * 359.95388 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 1.3448 -2.1616 -4.4123 10 1 2.4875 -0.1403 -5.1120 11 1 3.6310 -1.7566 -3.7118 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8589 1.1586 2.4115 15 6 2.6488 -0.7288 3.5878 16 6 2.7001 0.2397 4.7412 17 6 3.8510 0.9675 4.9804 18 6 3.9000 1.8601 6.0342 19 6 2.7972 2.0185 6.8595 20 8 2.8451 2.8919 7.9003 21 6 1.6433 1.2828 6.6212 22 9 0.5668 1.4340 7.4235 23 6 1.5981 0.3946 5.5616 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7090 1.1614 -3.4844 28 1 2.2490 -1.6317 1.1527 29 1 1.9759 -1.5505 3.8326 30 1 3.6479 -1.1213 3.3987 31 1 4.7116 0.8414 4.3402 32 1 4.7984 2.4309 6.2174 33 1 3.1604 2.5017 8.7270 34 1 0.7015 -0.1778 5.3750 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001443766176.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:40 Heat of formation + Delta-G solvation = -109.539507 kcal Electronic energy + Delta-G solvation = -19513.814743 eV Core-core repulsion = 16133.067675 eV Total energy + Delta-G solvation = -3380.747069 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.88977 -39.88469 -38.72904 -36.95888 -34.78837 -32.48677 -31.89829 -30.69130 -29.06474 -26.74152 -25.26365 -23.06678 -22.34225 -20.88866 -19.43389 -18.72464 -17.33188 -16.88148 -16.75409 -16.07233 -15.70945 -15.25871 -15.13416 -14.61643 -14.32606 -14.00818 -13.79977 -13.44277 -13.09444 -12.58519 -12.40501 -11.94655 -11.83300 -11.68758 -11.51658 -11.10364 -10.94320 -10.73913 -10.70106 -10.33897 -10.25328 -9.18273 -9.06476 -8.93520 -8.58135 -8.50138 -7.93553 -6.13869 -4.23620 0.97465 1.11364 3.22759 3.29328 3.31182 3.34301 3.35473 3.83869 4.15731 4.24136 4.39107 4.60486 4.71163 5.12188 5.17552 5.18459 5.39962 5.48105 5.54188 5.74937 5.89375 5.97824 6.09184 6.42598 6.64825 6.81180 6.95054 7.13697 7.41927 7.43947 7.53955 7.67488 7.89708 8.13526 8.63650 8.76062 9.10202 9.44136 10.92043 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.041926 B = 0.003648 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.688514 B = 7674.179014 C = 7855.949940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.048 0.952 4 C -0.535 4.535 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.709 5.709 13 C 0.501 3.499 14 O -0.547 6.547 15 C -0.109 4.109 16 C -0.031 4.031 17 C -0.100 4.100 18 C -0.115 4.115 19 C 0.064 3.936 20 O -0.489 6.489 21 C 0.074 3.926 22 F -0.136 7.136 23 C -0.126 4.126 24 H 0.014 0.986 25 H 0.090 0.910 26 H 0.026 0.974 27 H 0.265 0.735 28 H 0.389 0.611 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.134 0.866 32 H 0.138 0.862 33 H 0.387 0.613 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.573 -4.091 17.221 18.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.357 5.357 13 C 0.285 3.715 14 O -0.425 6.425 15 C -0.149 4.149 16 C -0.032 4.032 17 C -0.118 4.118 18 C -0.133 4.133 19 C 0.019 3.981 20 O -0.298 6.298 21 C 0.055 3.945 22 F -0.115 7.115 23 C -0.145 4.145 24 H 0.033 0.967 25 H 0.108 0.892 26 H 0.045 0.955 27 H 0.075 0.925 28 H 0.221 0.779 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.152 0.848 32 H 0.156 0.844 33 H 0.243 0.757 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.015 -2.694 16.692 17.636 hybrid contribution 0.287 -1.161 -0.436 1.273 sum 5.302 -3.855 16.256 17.528 Atomic orbital electron populations 1.22079 0.98495 0.99075 1.00921 1.18747 0.91017 0.94009 0.79999 0.93372 1.21215 1.32527 1.13232 0.90333 0.92058 1.24898 0.94824 0.94930 0.99087 1.69906 1.35849 1.22372 1.23910 0.86447 0.79151 0.79265 0.82210 1.20550 1.21062 1.19849 1.46527 1.65178 1.13546 1.10484 1.20227 0.79160 0.87635 0.84484 1.90701 1.50811 1.15971 1.85015 1.20790 1.04267 0.97801 0.92061 1.19232 0.92830 0.96762 0.94360 1.20983 0.98376 0.95495 0.96941 1.21244 0.97768 0.98459 0.95850 1.18389 0.92853 0.93745 0.93139 1.84903 1.88832 1.35881 1.20205 1.18017 0.84630 0.99013 0.92875 1.91483 1.53272 1.94726 1.71979 1.20929 0.99813 0.99404 0.94382 0.96670 0.89172 0.95486 0.92547 0.77888 0.88111 0.87879 0.84826 0.84450 0.75739 0.84414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 9.26 37.16 0.34 -3.31 16 2 C 0.26 6.64 2.56 -69.08 -0.18 6.46 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 4 C -0.53 -13.97 8.73 -34.44 -0.30 -14.27 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -24.83 11.32 55.43 0.63 -24.20 16 8 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 9 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 12 N -0.71 -14.12 5.07 -54.93 -0.28 -14.40 16 13 C 0.50 9.44 7.79 -10.98 -0.09 9.36 16 14 O -0.55 -12.87 15.70 5.56 0.09 -12.79 16 15 C -0.11 -1.38 5.83 -29.03 -0.17 -1.55 16 16 C -0.03 -0.42 4.37 -104.61 -0.46 -0.88 16 17 C -0.10 -1.22 9.69 -39.59 -0.38 -1.61 16 18 C -0.11 -1.33 9.98 -39.45 -0.39 -1.73 16 19 C 0.06 0.82 6.71 -39.18 -0.26 0.56 16 20 O -0.49 -5.54 13.37 -19.59 -0.26 -5.80 16 21 C 0.07 1.04 7.31 -39.30 -0.29 0.75 16 22 F -0.14 -1.97 17.11 2.25 0.04 -1.93 16 23 C -0.13 -1.72 9.67 -39.54 -0.38 -2.11 16 24 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.39 6.49 8.54 -40.82 -0.35 6.14 16 29 H 0.10 1.03 8.08 -51.93 -0.42 0.61 16 30 H 0.10 1.03 8.08 -51.93 -0.42 0.61 16 31 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.14 1.26 8.06 -52.48 -0.42 0.84 16 33 H 0.39 2.26 9.06 45.56 0.41 2.67 16 34 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 304.56 15.07 4.59 4.59 Total: -1.00 -33.13 304.56 -6.01 -39.14 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -3.14 Total: 6.65 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -2.65 Total: -6.66 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.35 Total: -38.59 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -0.17 Total: -18.59 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.04 Total: -1.93 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -33.13 -6.01 -39.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001443766176.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.398 kcal (2) G-P(sol) polarization free energy of solvation -33.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds