Wall clock time and date at job start Mon Mar 30 2020 00:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 239.99664 * 2 1 3 5 5 H 1.07994 * 120.00496 * 239.99942 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00100 * 4 2 1 7 7 N 1.31518 * 120.00216 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00016 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47195 * 90.00222 * 8 6 4 10 10 H 1.48504 * 109.47636 * 210.00509 * 8 6 4 11 11 H 1.48508 * 109.47108 * 330.00152 * 8 6 4 12 12 N 1.46500 * 109.46998 * 119.99945 * 2 1 3 13 13 C 1.34779 * 119.99741 * 275.00368 * 12 2 1 14 14 O 1.21279 * 120.00369 * 359.97438 * 13 12 2 15 15 C 1.50708 * 119.99762 * 179.97438 * 13 12 2 16 16 C 1.50697 * 109.47045 * 179.97438 * 15 13 12 17 17 C 1.38261 * 119.93554 * 269.72716 * 16 15 13 18 18 C 1.38190 * 120.09278 * 179.76850 * 17 16 15 19 19 C 1.38653 * 119.96854 * 0.50644 * 18 17 16 20 20 O 1.35953 * 120.06550 * 179.72370 * 19 18 17 21 21 C 1.38906 * 119.87489 * 359.74793 * 19 18 17 22 22 F 1.35107 * 120.04810 * 179.97438 * 21 19 18 23 23 C 1.38251 * 119.93675 * 90.00262 * 16 15 13 24 24 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 25 25 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 26 26 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 27 27 H 0.96999 * 120.00239 * 180.02562 * 7 6 4 28 28 H 0.96997 * 120.00110 * 94.99637 * 12 2 1 29 29 H 1.08994 * 109.47136 * 300.00021 * 15 13 12 30 30 H 1.09002 * 109.46457 * 59.99935 * 15 13 12 31 31 H 1.08001 * 119.95528 * 0.02562 * 17 16 15 32 32 H 1.08003 * 120.01375 * 180.25368 * 18 17 16 33 33 H 0.96703 * 114.00282 * 270.02342 * 20 19 18 34 34 H 1.08000 * 119.98868 * 359.95388 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 1.3448 -2.1616 -4.4123 10 1 2.4875 -0.1403 -5.1120 11 1 3.6310 -1.7566 -3.7118 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8589 1.1586 2.4115 15 6 2.6488 -0.7288 3.5878 16 6 2.7001 0.2397 4.7412 17 6 3.8510 0.9675 4.9804 18 6 3.9000 1.8601 6.0342 19 6 2.7972 2.0185 6.8595 20 8 2.8451 2.8919 7.9003 21 6 1.6433 1.2828 6.6212 22 9 0.5668 1.4340 7.4235 23 6 1.5981 0.3946 5.5616 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7090 1.1614 -3.4844 28 1 2.2490 -1.6317 1.1527 29 1 1.9759 -1.5505 3.8326 30 1 3.6479 -1.1213 3.3987 31 1 4.7116 0.8414 4.3402 32 1 4.7984 2.4309 6.2174 33 1 3.1604 2.5017 8.7270 34 1 0.7015 -0.1778 5.3750 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001443766176.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:40 Heat of formation + Delta-G solvation = -133.769113 kcal Electronic energy + Delta-G solvation = -19514.865418 eV Core-core repulsion = 16133.067675 eV Total energy + Delta-G solvation = -3381.797743 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.94718 -41.02230 -40.06150 -37.95809 -36.62380 -34.30710 -33.07864 -31.66384 -30.81618 -27.91086 -27.30808 -24.04829 -23.64891 -22.41127 -21.08296 -19.63552 -18.95057 -18.00233 -17.77262 -17.46550 -17.06479 -16.98430 -16.20938 -15.99109 -15.85419 -15.00093 -14.91840 -14.75945 -14.57299 -14.28022 -13.77693 -13.49464 -13.04739 -12.93225 -12.85506 -12.76716 -12.55944 -12.52266 -12.26451 -12.11994 -11.61855 -11.08271 -10.75486 -10.56507 -9.93010 -9.70401 -9.51846 -8.15994 -6.33713 0.00718 0.15161 1.46486 1.47152 1.57696 1.88861 2.28571 2.43072 2.85154 2.97472 3.14747 3.30756 3.60927 3.79059 4.16462 4.22334 4.24832 4.49077 4.62346 4.76169 4.84106 4.92821 4.96447 5.02542 5.11726 5.16323 5.45516 5.46778 5.63796 5.71572 5.75928 5.93533 6.12010 6.71480 6.75506 7.02517 7.34943 7.63432 8.90247 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.041926 B = 0.003648 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.688514 B = 7674.179014 C = 7855.949940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.270 3.730 3 H -0.004 1.004 4 C -0.545 4.545 5 H 0.077 0.923 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.973 3.027 9 H -0.272 1.272 10 H -0.289 1.289 11 H -0.261 1.261 12 N -0.705 5.705 13 C 0.497 3.503 14 O -0.599 6.599 15 C -0.092 4.092 16 C -0.050 4.050 17 C -0.101 4.101 18 C -0.116 4.116 19 C 0.065 3.935 20 O -0.500 6.500 21 C 0.048 3.952 22 F -0.146 7.146 23 C -0.135 4.135 24 H 0.009 0.991 25 H 0.063 0.937 26 H 0.041 0.959 27 H 0.264 0.736 28 H 0.408 0.592 29 H 0.132 0.868 30 H 0.140 0.860 31 H 0.153 0.847 32 H 0.163 0.837 33 H 0.411 0.589 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.233 -5.953 17.660 19.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.166 3.834 3 H 0.014 0.986 4 C -0.583 4.583 5 H 0.095 0.905 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.797 3.203 9 H -0.197 1.197 10 H -0.215 1.215 11 H -0.185 1.185 12 N -0.355 5.355 13 C 0.284 3.716 14 O -0.481 6.481 15 C -0.131 4.131 16 C -0.050 4.050 17 C -0.119 4.119 18 C -0.134 4.134 19 C 0.020 3.980 20 O -0.313 6.313 21 C 0.028 3.972 22 F -0.124 7.124 23 C -0.154 4.154 24 H 0.028 0.972 25 H 0.082 0.918 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.243 0.757 29 H 0.150 0.850 30 H 0.158 0.842 31 H 0.171 0.829 32 H 0.181 0.819 33 H 0.270 0.730 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 6.698 -4.612 17.180 19.007 hybrid contribution -0.217 -0.504 -0.478 0.728 sum 6.481 -5.116 16.702 18.632 Atomic orbital electron populations 1.21902 0.98618 0.99421 0.99347 1.18305 0.90907 0.91940 0.82272 0.98582 1.21575 1.32469 1.13539 0.90712 0.90506 1.25831 0.94929 0.95554 1.02462 1.70068 1.37192 1.24038 1.24537 0.85334 0.79073 0.77951 0.77903 1.19743 1.21500 1.18517 1.46253 1.65289 1.14349 1.09579 1.21282 0.77605 0.87127 0.85543 1.90681 1.52853 1.18642 1.85918 1.20760 1.06655 0.97574 0.88155 1.19394 0.93222 0.97702 0.94723 1.21320 0.98695 0.94889 0.97031 1.21535 0.98294 0.98351 0.95206 1.18554 0.92725 0.93125 0.93638 1.84833 1.89096 1.36171 1.21219 1.18298 0.85059 1.00296 0.93550 1.91449 1.53801 1.94913 1.72276 1.21097 1.00292 0.99523 0.94516 0.97164 0.91791 0.93958 0.92657 0.75670 0.84991 0.84245 0.82895 0.81916 0.72972 0.83956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.78 9.26 71.98 0.67 -6.12 16 2 C 0.27 13.73 2.56 44.25 0.11 13.85 16 3 H 0.00 -0.23 7.58 -2.39 -0.02 -0.25 16 4 C -0.54 -28.17 8.73 25.60 0.22 -27.95 16 5 H 0.08 3.64 7.74 -2.91 -0.02 3.62 16 6 C 0.01 0.64 5.30 84.65 0.45 1.09 16 7 N -0.92 -52.78 11.32 21.45 0.24 -52.54 16 8 Si 0.97 41.31 29.54 68.60 2.03 43.33 16 9 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 10 H -0.29 -12.37 7.11 99.48 0.71 -11.67 16 11 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 12 N -0.71 -27.31 5.07 -446.08 -2.26 -29.57 16 13 C 0.50 18.22 7.79 87.66 0.68 18.90 16 14 O -0.60 -28.62 15.70 -3.03 -0.05 -28.67 16 15 C -0.09 -2.07 5.83 29.10 0.17 -1.90 16 16 C -0.05 -1.24 4.37 -19.86 -0.09 -1.32 16 17 C -0.10 -2.26 9.69 22.26 0.22 -2.04 16 18 C -0.12 -2.45 9.98 22.36 0.22 -2.22 16 19 C 0.07 1.59 6.71 22.53 0.15 1.74 16 20 O -0.50 -10.62 13.37 -93.02 -1.24 -11.87 16 21 C 0.05 1.31 7.31 22.45 0.16 1.47 16 22 F -0.15 -4.24 17.11 44.97 0.77 -3.47 16 23 C -0.14 -3.59 9.67 22.30 0.22 -3.37 16 24 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 25 H 0.06 3.57 6.07 -2.39 -0.01 3.56 16 26 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 28 H 0.41 12.61 8.54 -92.71 -0.79 11.82 16 29 H 0.13 2.18 8.08 -2.39 -0.02 2.16 16 30 H 0.14 2.15 8.08 -2.39 -0.02 2.14 16 31 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 32 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 33 H 0.41 4.09 9.06 -74.05 -0.67 3.42 16 34 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -73.80 304.56 2.36 -71.45 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -0.32 Total: 19.21 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: 3.19 Total: -7.88 kcal Atomic # 7 Polarization: -80.09 SS G_CDS: -2.02 Total: -82.11 kcal Atomic # 8 Polarization: -39.24 SS G_CDS: -1.29 Total: -40.53 kcal Atomic # 9 Polarization: -4.24 SS G_CDS: 0.77 Total: -3.47 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.33 kcal Total: -73.80 2.36 -71.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001443766176.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.324 kcal (2) G-P(sol) polarization free energy of solvation -73.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds