Wall clock time and date at job start Mon Mar 30 2020 00:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.34777 * 120.00015 * 84.99707 * 12 2 1 14 14 O 1.21279 * 120.00228 * 359.97438 * 13 12 2 15 15 C 1.50709 * 119.99692 * 180.02562 * 13 12 2 16 16 C 1.50701 * 109.46959 * 180.02562 * 15 13 12 17 17 C 1.38262 * 119.93276 * 269.72557 * 16 15 13 18 18 C 1.38189 * 120.09071 * 179.76764 * 17 16 15 19 19 C 1.38660 * 119.97159 * 0.50463 * 18 17 16 20 20 O 1.35954 * 120.06355 * 179.72750 * 19 18 17 21 21 C 1.38909 * 119.87424 * 359.74690 * 19 18 17 22 22 F 1.35093 * 120.05039 * 179.97438 * 21 19 18 23 23 C 1.38258 * 119.93876 * 89.99565 * 16 15 13 24 24 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 25 25 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 0.97005 * 119.99880 * 265.00058 * 12 2 1 29 29 H 1.09003 * 109.46726 * 300.00059 * 15 13 12 30 30 H 1.08992 * 109.47335 * 60.00408 * 15 13 12 31 31 H 1.08001 * 119.95430 * 0.02562 * 17 16 15 32 32 H 1.08000 * 120.01411 * 180.25042 * 18 17 16 33 33 H 0.96703 * 113.99803 * 270.01700 * 20 19 18 34 34 H 1.08001 * 119.98540 * 359.96134 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0180 -2.3571 14 8 1.8581 1.1586 -2.4117 15 6 2.6488 -0.7286 -3.5878 16 6 2.7002 0.2400 -4.7412 17 6 1.6001 0.3908 -5.5650 18 6 1.6419 1.2815 -6.6207 19 6 2.7922 2.0177 -6.8607 20 8 2.8373 2.8905 -7.9021 21 6 3.8985 1.8614 -6.0354 22 9 5.0212 2.5764 -6.2663 23 6 3.8491 0.9721 -4.9769 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 0.7089 1.1611 3.4845 28 1 2.2490 -1.6317 -1.1527 29 1 3.6480 -1.1211 -3.3986 30 1 1.9760 -1.5503 -3.8327 31 1 0.7054 -0.1854 -5.3807 32 1 0.7805 1.4013 -7.2610 33 1 3.1518 2.5001 -8.7291 34 1 4.7084 0.8497 -4.3341 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001443766667.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:43 Heat of formation + Delta-G solvation = -109.527985 kcal Electronic energy + Delta-G solvation = -19512.186703 eV Core-core repulsion = 16131.440134 eV Total energy + Delta-G solvation = -3380.746569 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.88723 -39.88394 -38.72904 -36.95849 -34.78854 -32.48604 -31.89787 -30.69020 -29.06684 -26.74143 -25.26364 -23.06353 -22.34646 -20.88684 -19.43390 -18.72411 -17.32500 -16.88401 -16.75603 -16.06700 -15.72429 -15.27622 -15.11407 -14.58369 -14.26818 -14.02407 -13.91994 -13.37854 -13.09058 -12.59936 -12.39695 -11.93501 -11.80271 -11.74964 -11.49806 -11.10408 -10.94210 -10.74376 -10.69630 -10.33958 -10.25352 -9.18301 -9.06585 -8.93265 -8.57752 -8.50399 -7.93564 -6.13828 -4.23471 0.97445 1.11428 3.22927 3.29561 3.31427 3.34323 3.35522 3.83926 4.15789 4.24543 4.39192 4.60652 4.70845 5.11762 5.17727 5.18697 5.40438 5.47827 5.54207 5.74740 5.89354 5.98053 6.08923 6.42473 6.64860 6.80724 6.94408 7.13386 7.41922 7.43879 7.53889 7.67474 7.89707 8.13491 8.63659 8.76160 9.10218 9.44261 10.92109 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.038542 B = 0.003687 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.298667 B = 7592.423394 C = 7784.639617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.264 3.736 3 H 0.048 0.952 4 C -0.535 4.535 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.274 1.274 11 H -0.285 1.285 12 N -0.709 5.709 13 C 0.501 3.499 14 O -0.547 6.547 15 C -0.109 4.109 16 C -0.031 4.031 17 C -0.100 4.100 18 C -0.115 4.115 19 C 0.064 3.936 20 O -0.489 6.489 21 C 0.075 3.925 22 F -0.136 7.136 23 C -0.126 4.126 24 H 0.014 0.986 25 H 0.026 0.974 26 H 0.090 0.910 27 H 0.264 0.736 28 H 0.389 0.611 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.133 0.867 32 H 0.137 0.863 33 H 0.387 0.613 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.303 -4.672 -17.811 18.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.198 1.198 11 H -0.211 1.211 12 N -0.357 5.357 13 C 0.285 3.715 14 O -0.425 6.425 15 C -0.149 4.149 16 C -0.032 4.032 17 C -0.118 4.118 18 C -0.133 4.133 19 C 0.019 3.981 20 O -0.298 6.298 21 C 0.055 3.945 22 F -0.114 7.114 23 C -0.145 4.145 24 H 0.033 0.967 25 H 0.045 0.955 26 H 0.108 0.892 27 H 0.074 0.926 28 H 0.221 0.779 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.151 0.849 32 H 0.155 0.845 33 H 0.243 0.757 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.837 -3.252 -17.258 17.789 hybrid contribution 0.764 -1.039 0.559 1.405 sum 3.601 -4.291 -16.699 17.614 Atomic orbital electron populations 1.22074 0.98475 0.99056 1.00913 1.18746 0.91027 0.94014 0.80003 0.93389 1.21218 1.32526 1.13232 0.90338 0.92063 1.24899 0.94821 0.94931 0.99088 1.69906 1.35850 1.22377 1.23904 0.86445 0.79152 0.79268 0.82208 1.20545 1.19849 1.21059 1.46527 1.65173 1.13547 1.10486 1.20227 0.79159 0.87626 0.84494 1.90701 1.50805 1.15966 1.85025 1.20790 1.04242 0.97795 0.92092 1.19235 0.92808 0.96330 0.94809 1.20970 0.98104 0.98492 0.94274 1.21238 0.97416 0.95338 0.99353 1.18391 0.92900 0.94675 0.92174 1.84904 1.88620 1.36219 1.20075 1.18018 0.82932 0.95019 0.98523 1.91480 1.49400 1.76362 1.94191 1.20945 1.00104 0.96578 0.96873 0.96672 0.95489 0.89177 0.92551 0.77887 0.88055 0.87936 0.84884 0.84469 0.75741 0.84356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 9.26 37.16 0.34 -3.27 16 2 C 0.26 6.64 2.56 -69.09 -0.18 6.46 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 4 C -0.53 -14.00 8.73 -34.44 -0.30 -14.30 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.84 11.32 55.43 0.63 -24.22 16 8 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 9 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 N -0.71 -14.12 5.07 -54.93 -0.28 -14.40 16 13 C 0.50 9.44 7.79 -10.98 -0.09 9.36 16 14 O -0.55 -12.87 15.70 5.56 0.09 -12.79 16 15 C -0.11 -1.38 5.83 -29.03 -0.17 -1.55 16 16 C -0.03 -0.42 4.37 -104.61 -0.46 -0.87 16 17 C -0.10 -1.22 9.69 -39.59 -0.38 -1.60 16 18 C -0.11 -1.33 9.99 -39.44 -0.39 -1.72 16 19 C 0.06 0.82 6.71 -39.18 -0.26 0.56 16 20 O -0.49 -5.54 13.37 -19.60 -0.26 -5.80 16 21 C 0.07 1.05 7.31 -39.30 -0.29 0.76 16 22 F -0.14 -1.98 17.11 2.25 0.04 -1.94 16 23 C -0.13 -1.73 9.67 -39.54 -0.38 -2.12 16 24 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 27 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.39 6.49 8.54 -40.82 -0.35 6.14 16 29 H 0.10 1.05 8.08 -51.93 -0.42 0.63 16 30 H 0.10 1.00 8.08 -51.93 -0.42 0.59 16 31 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 32 H 0.14 1.25 8.06 -52.49 -0.42 0.82 16 33 H 0.39 2.26 9.06 45.56 0.41 2.67 16 34 H 0.14 1.75 8.06 -52.49 -0.42 1.32 16 LS Contribution 304.56 15.07 4.59 4.59 Total: -1.00 -33.17 304.56 -6.01 -39.18 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -3.14 Total: 6.57 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: -2.65 Total: -6.64 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.35 Total: -38.61 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -0.17 Total: -18.59 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.04 Total: -1.94 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -33.17 -6.01 -39.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001443766667.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.347 kcal (2) G-P(sol) polarization free energy of solvation -33.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds