Wall clock time and date at job start Mon Mar 30 2020 00:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.34777 * 120.00015 * 84.99707 * 12 2 1 14 14 O 1.21279 * 120.00228 * 359.97438 * 13 12 2 15 15 C 1.50709 * 119.99692 * 180.02562 * 13 12 2 16 16 C 1.50701 * 109.46959 * 180.02562 * 15 13 12 17 17 C 1.38262 * 119.93276 * 269.72557 * 16 15 13 18 18 C 1.38189 * 120.09071 * 179.76764 * 17 16 15 19 19 C 1.38660 * 119.97159 * 0.50463 * 18 17 16 20 20 O 1.35954 * 120.06355 * 179.72750 * 19 18 17 21 21 C 1.38909 * 119.87424 * 359.74690 * 19 18 17 22 22 F 1.35093 * 120.05039 * 179.97438 * 21 19 18 23 23 C 1.38258 * 119.93876 * 89.99565 * 16 15 13 24 24 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 25 25 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 0.97005 * 119.99880 * 265.00058 * 12 2 1 29 29 H 1.09003 * 109.46726 * 300.00059 * 15 13 12 30 30 H 1.08992 * 109.47335 * 60.00408 * 15 13 12 31 31 H 1.08001 * 119.95430 * 0.02562 * 17 16 15 32 32 H 1.08000 * 120.01411 * 180.25042 * 18 17 16 33 33 H 0.96703 * 113.99803 * 270.01700 * 20 19 18 34 34 H 1.08001 * 119.98540 * 359.96134 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0180 -2.3571 14 8 1.8581 1.1586 -2.4117 15 6 2.6488 -0.7286 -3.5878 16 6 2.7002 0.2400 -4.7412 17 6 1.6001 0.3908 -5.5650 18 6 1.6419 1.2815 -6.6207 19 6 2.7922 2.0177 -6.8607 20 8 2.8373 2.8905 -7.9021 21 6 3.8985 1.8614 -6.0354 22 9 5.0212 2.5764 -6.2663 23 6 3.8491 0.9721 -4.9769 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 0.7089 1.1611 3.4845 28 1 2.2490 -1.6317 -1.1527 29 1 3.6480 -1.1211 -3.3986 30 1 1.9760 -1.5503 -3.8327 31 1 0.7054 -0.1854 -5.3807 32 1 0.7805 1.4013 -7.2610 33 1 3.1518 2.5001 -8.7291 34 1 4.7084 0.8497 -4.3341 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001443766667.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:43 Heat of formation + Delta-G solvation = -133.830182 kcal Electronic energy + Delta-G solvation = -19513.240525 eV Core-core repulsion = 16131.440134 eV Total energy + Delta-G solvation = -3381.800391 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.95214 -41.02121 -40.06051 -37.95709 -36.62277 -34.30894 -33.07784 -31.66193 -30.81354 -27.90775 -27.30569 -24.04030 -23.65720 -22.40622 -21.08195 -19.63525 -18.95043 -17.99262 -17.79146 -17.46184 -17.08092 -16.98293 -16.21544 -15.98855 -15.79436 -15.11118 -14.93289 -14.74079 -14.47565 -14.30649 -13.78306 -13.48777 -13.05954 -12.91383 -12.84223 -12.75697 -12.63262 -12.47020 -12.25883 -12.12721 -11.61819 -11.08166 -10.75489 -10.56658 -9.92863 -9.70313 -9.51727 -8.16447 -6.34032 0.00800 0.15180 1.45741 1.46674 1.57044 1.88875 2.28589 2.42730 2.85180 2.97526 3.14276 3.30921 3.60961 3.79056 4.16542 4.22286 4.25167 4.49032 4.62278 4.77312 4.84181 4.94557 4.96769 5.02903 5.12354 5.16330 5.46314 5.46527 5.63675 5.72396 5.76068 5.93924 6.12529 6.71518 6.75159 7.02519 7.34585 7.63408 8.89732 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.038542 B = 0.003687 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.298667 B = 7592.423394 C = 7784.639617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.269 3.731 3 H -0.006 1.006 4 C -0.546 4.546 5 H 0.076 0.924 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.972 3.028 9 H -0.270 1.270 10 H -0.263 1.263 11 H -0.289 1.289 12 N -0.705 5.705 13 C 0.497 3.503 14 O -0.599 6.599 15 C -0.092 4.092 16 C -0.050 4.050 17 C -0.100 4.100 18 C -0.115 4.115 19 C 0.065 3.935 20 O -0.500 6.500 21 C 0.047 3.953 22 F -0.146 7.146 23 C -0.137 4.137 24 H 0.012 0.988 25 H 0.043 0.957 26 H 0.063 0.937 27 H 0.264 0.736 28 H 0.408 0.592 29 H 0.130 0.870 30 H 0.142 0.858 31 H 0.155 0.845 32 H 0.164 0.836 33 H 0.411 0.589 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.388 -6.915 -18.664 20.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.165 3.835 3 H 0.012 0.988 4 C -0.584 4.584 5 H 0.094 0.906 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.797 3.203 9 H -0.196 1.196 10 H -0.187 1.187 11 H -0.215 1.215 12 N -0.355 5.355 13 C 0.284 3.716 14 O -0.481 6.481 15 C -0.131 4.131 16 C -0.050 4.050 17 C -0.118 4.118 18 C -0.133 4.133 19 C 0.020 3.980 20 O -0.313 6.313 21 C 0.027 3.973 22 F -0.125 7.125 23 C -0.156 4.156 24 H 0.031 0.969 25 H 0.062 0.938 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.243 0.757 29 H 0.148 0.852 30 H 0.160 0.840 31 H 0.173 0.827 32 H 0.182 0.818 33 H 0.270 0.730 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.946 -5.549 -18.159 19.215 hybrid contribution 0.726 -0.270 0.723 1.060 sum 3.673 -5.820 -17.435 18.744 Atomic orbital electron populations 1.21883 0.98321 0.99510 0.99441 1.18308 0.91129 0.91810 0.82231 0.98803 1.21581 1.32485 1.13536 0.90786 0.90608 1.25824 0.94933 0.95562 1.02433 1.70067 1.37167 1.24004 1.24530 0.85341 0.79044 0.77991 0.77933 1.19577 1.18685 1.21515 1.46255 1.65293 1.14348 1.09575 1.21280 0.77597 0.87113 0.85568 1.90681 1.52866 1.18606 1.85940 1.20761 1.06393 0.97756 0.88234 1.19399 0.93126 0.96987 0.95530 1.21321 0.98334 0.98369 0.93788 1.21542 0.97703 0.94611 0.99483 1.18561 0.92832 0.94374 0.92279 1.84834 1.88784 1.36677 1.21021 1.18306 0.83359 0.95955 0.99633 1.91444 1.49979 1.76717 1.94346 1.21105 1.00730 0.96770 0.96967 0.96895 0.93840 0.91861 0.92650 0.75675 0.85231 0.84017 0.82716 0.81829 0.72974 0.84139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.63 9.26 71.98 0.67 -5.96 16 2 C 0.27 13.71 2.56 44.24 0.11 13.83 16 3 H -0.01 -0.36 7.58 -2.39 -0.02 -0.38 16 4 C -0.55 -28.36 8.73 25.60 0.22 -28.13 16 5 H 0.08 3.63 7.74 -2.91 -0.02 3.60 16 6 C 0.01 0.66 5.30 84.66 0.45 1.11 16 7 N -0.92 -52.81 11.32 21.45 0.24 -52.57 16 8 Si 0.97 41.53 29.54 68.60 2.03 43.55 16 9 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 10 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 11 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 12 N -0.71 -27.32 5.07 -446.10 -2.26 -29.59 16 13 C 0.50 18.22 7.79 87.66 0.68 18.90 16 14 O -0.60 -28.62 15.70 -3.02 -0.05 -28.66 16 15 C -0.09 -2.07 5.83 29.10 0.17 -1.90 16 16 C -0.05 -1.24 4.37 -19.85 -0.09 -1.33 16 17 C -0.10 -2.19 9.69 22.26 0.22 -1.97 16 18 C -0.12 -2.40 9.99 22.36 0.22 -2.18 16 19 C 0.07 1.58 6.71 22.53 0.15 1.74 16 20 O -0.50 -10.62 13.37 -93.03 -1.24 -11.86 16 21 C 0.05 1.31 7.31 22.45 0.16 1.47 16 22 F -0.15 -4.31 17.11 44.97 0.77 -3.54 16 23 C -0.14 -3.68 9.67 22.30 0.22 -3.47 16 24 H 0.01 0.60 8.14 -2.38 -0.02 0.58 16 25 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.06 3.50 6.07 -2.39 -0.01 3.49 16 27 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 28 H 0.41 12.63 8.54 -92.70 -0.79 11.83 16 29 H 0.13 2.22 8.08 -2.39 -0.02 2.20 16 30 H 0.14 2.11 8.08 -2.39 -0.02 2.09 16 31 H 0.16 2.64 8.06 -2.91 -0.02 2.61 16 32 H 0.16 2.46 8.06 -2.91 -0.02 2.43 16 33 H 0.41 4.08 9.06 -74.06 -0.67 3.41 16 34 H 0.14 3.53 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -74.07 304.56 2.36 -71.72 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -0.32 Total: 18.84 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: 3.19 Total: -7.89 kcal Atomic # 7 Polarization: -80.13 SS G_CDS: -2.02 Total: -82.15 kcal Atomic # 8 Polarization: -39.23 SS G_CDS: -1.29 Total: -40.52 kcal Atomic # 9 Polarization: -4.31 SS G_CDS: 0.77 Total: -3.54 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.55 kcal Total: -74.07 2.36 -71.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001443766667.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.114 kcal (2) G-P(sol) polarization free energy of solvation -74.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds