Wall clock time and date at job start Mon Mar 30 2020 00:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47262 * 2 1 4 4 C 1.50702 * 109.47327 * 239.99913 * 2 1 3 5 5 O 1.21277 * 119.99955 * 240.00131 * 4 2 1 6 6 N 1.34781 * 119.99696 * 59.99865 * 4 2 1 7 7 C 1.46506 * 119.99487 * 179.97438 * 6 4 2 8 8 C 1.50709 * 109.46589 * 180.02562 * 7 6 4 9 9 O 1.21286 * 120.00003 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99441 * 180.02562 * 8 7 6 11 11 C 1.37095 * 119.99740 * 179.97438 * 10 8 7 12 12 H 1.08007 * 119.99840 * 0.02562 * 11 10 8 13 13 C 1.38950 * 120.00218 * 179.97438 * 11 10 8 14 14 N 1.31408 * 119.99918 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 119.99833 * 0.02562 * 13 11 10 16 16 H 1.48510 * 109.47208 * 89.99792 * 15 13 11 17 17 H 1.48493 * 109.47150 * 209.99830 * 15 13 11 18 18 H 1.48501 * 109.47181 * 330.00017 * 15 13 11 19 19 N 1.46495 * 109.47183 * 119.99897 * 2 1 3 20 20 C 1.34428 * 126.82196 * 34.99958 * 19 2 1 21 21 N 1.30834 * 108.08033 * 180.02562 * 20 19 2 22 22 C 1.33241 * 109.82716 * 0.02562 * 21 20 19 23 23 N 1.30718 * 108.94820 * 359.97438 * 22 21 20 24 24 H 1.08995 * 109.47086 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47443 * 300.00146 * 1 2 3 26 26 H 1.09002 * 109.46802 * 59.99846 * 1 2 3 27 27 H 0.96998 * 119.99957 * 0.02562 * 6 4 2 28 28 H 1.08997 * 109.47362 * 300.00065 * 7 6 4 29 29 H 1.09000 * 109.46607 * 60.00683 * 7 6 4 30 30 H 0.96996 * 120.00405 * 0.02562 * 10 8 7 31 31 H 0.97008 * 119.99583 * 180.02562 * 14 13 11 32 32 H 1.08001 * 125.96487 * 0.02562 * 20 19 2 33 33 H 1.08002 * 125.52885 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1191 6 7 1.7067 -0.2499 -2.4546 7 6 2.1956 -0.9403 -3.6507 8 6 1.6936 -0.2295 -4.8812 9 8 0.9966 0.7568 -4.7699 10 7 2.0193 -0.6900 -6.1053 11 6 1.5623 -0.0438 -7.2247 12 1 0.9416 0.8345 -7.1256 13 6 1.8984 -0.5182 -8.4867 14 7 1.4599 0.1010 -9.5597 15 14 2.9726 -2.0368 -8.6581 16 1 2.1141 -3.2478 -8.7041 17 1 3.7649 -1.9440 -9.9105 18 1 3.8925 -2.1262 -7.4958 19 7 2.0183 -0.6906 1.1961 20 6 1.4558 -1.7518 1.7998 21 7 2.1931 -2.0693 2.8329 22 6 3.2299 -1.2370 2.9211 23 7 3.1666 -0.3748 1.9406 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.1493 0.5389 -2.5436 28 1 3.2856 -0.9398 -3.6506 29 1 1.8326 -1.9681 -3.6508 30 1 2.5764 -1.4790 -6.1943 31 1 1.6943 -0.2305 -10.4407 32 1 0.5527 -2.2547 1.4868 33 1 3.9984 -1.2699 3.6792 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001459881183.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:13 Heat of formation + Delta-G solvation = 28.312491 kcal Electronic energy + Delta-G solvation = -19539.067405 eV Core-core repulsion = 16216.510760 eV Total energy + Delta-G solvation = -3322.556645 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.27019 -39.99024 -38.47328 -35.23918 -34.75922 -33.93788 -31.90583 -31.51156 -30.38081 -28.02951 -25.50978 -24.37143 -22.30085 -21.98014 -20.35060 -19.77831 -18.89551 -17.81706 -17.31810 -15.97939 -15.91604 -15.59647 -15.28586 -15.01496 -14.84327 -14.50533 -14.22351 -13.93395 -13.26249 -13.02724 -12.89593 -12.66526 -12.55628 -12.27746 -12.22771 -11.75465 -11.31029 -10.71646 -10.57331 -10.17339 -10.14471 -9.89548 -9.79120 -9.66301 -9.16818 -8.89936 -8.39959 -6.49227 -4.02345 1.42894 1.94573 2.34896 2.84714 2.92855 2.97680 3.02938 3.07933 3.44143 3.95976 4.07174 4.15915 4.33860 4.40657 4.50064 4.65667 4.99059 5.05077 5.07487 5.20107 5.50385 5.53650 5.62689 5.65302 6.04249 6.26282 6.28771 6.56839 7.32470 7.41087 7.88820 7.92899 8.02523 8.34836 8.72321 9.20181 9.51983 10.62649 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.043806 B = 0.003551 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.035601 B = 7883.244643 C = 8275.719036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.141 3.859 3 H 0.134 0.866 4 C 0.501 3.499 5 O -0.530 6.530 6 N -0.698 5.698 7 C 0.107 3.893 8 C 0.436 3.564 9 O -0.580 6.580 10 N -0.573 5.573 11 C -0.312 4.312 12 H 0.122 0.878 13 C 0.047 3.953 14 N -0.871 5.871 15 Si 0.879 3.121 16 H -0.268 1.268 17 H -0.274 1.274 18 H -0.267 1.267 19 N -0.360 5.360 20 C 0.270 3.730 21 N -0.548 5.548 22 C 0.198 3.802 23 N -0.314 5.314 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.098 0.902 27 H 0.414 0.586 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.375 0.625 31 H 0.277 0.723 32 H 0.215 0.785 33 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.702 -2.806 18.406 18.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.033 3.967 3 H 0.152 0.848 4 C 0.284 3.716 5 O -0.407 6.407 6 N -0.353 5.353 7 C -0.021 4.021 8 C 0.222 3.778 9 O -0.464 6.464 10 N -0.210 5.210 11 C -0.441 4.441 12 H 0.140 0.860 13 C -0.158 4.158 14 N -0.510 5.510 15 Si 0.705 3.295 16 H -0.193 1.193 17 H -0.199 1.199 18 H -0.193 1.193 19 N -0.151 5.151 20 C -0.027 4.027 21 N -0.275 5.275 22 C -0.105 4.105 23 N -0.141 5.141 24 H 0.094 0.906 25 H 0.101 0.899 26 H 0.117 0.883 27 H 0.253 0.747 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.208 0.792 31 H 0.087 0.913 32 H 0.231 0.769 33 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -0.235 -2.488 18.312 18.481 hybrid contribution 0.541 -0.887 -0.714 1.261 sum 0.306 -3.375 17.597 17.921 Atomic orbital electron populations 1.22213 0.89796 1.04695 1.05467 1.21197 0.96572 0.98098 0.80819 0.84850 1.20490 0.81278 0.85257 0.84577 1.90770 1.37356 1.26024 1.86509 1.45589 1.53085 1.32532 1.04127 1.21030 1.00177 0.96685 0.84216 1.19543 0.86590 0.87672 0.84033 1.90538 1.42095 1.28104 1.85703 1.42121 1.46020 1.27174 1.05695 1.19443 1.30453 1.12285 0.81895 0.85996 1.25074 0.97543 0.98131 0.95051 1.69615 1.43700 1.39548 0.98122 0.86675 0.80821 0.83108 0.78916 1.19315 1.19873 1.19255 1.50059 1.18985 1.24511 1.21513 1.25896 0.99183 0.87855 0.89784 1.70564 1.07278 1.28726 1.20943 1.25977 0.97280 0.90152 0.97128 1.78055 1.02747 1.25304 1.07957 0.90616 0.89901 0.88331 0.74706 0.89545 0.89455 0.79204 0.91267 0.76865 0.76697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.03 8.75 37.15 0.33 -0.70 16 2 C 0.14 1.39 3.77 -69.09 -0.26 1.12 16 3 H 0.13 1.15 8.14 -51.93 -0.42 0.73 16 4 C 0.50 6.71 7.22 -10.98 -0.08 6.63 16 5 O -0.53 -9.18 16.42 5.56 0.09 -9.09 16 6 N -0.70 -9.57 5.42 -61.46 -0.33 -9.91 16 7 C 0.11 1.69 6.15 -5.19 -0.03 1.65 16 8 C 0.44 8.95 7.85 -10.98 -0.09 8.87 16 9 O -0.58 -13.65 15.24 5.55 0.08 -13.57 16 10 N -0.57 -12.72 5.09 -10.96 -0.06 -12.78 16 11 C -0.31 -8.32 10.16 -14.93 -0.15 -8.47 16 12 H 0.12 3.70 7.39 -52.48 -0.39 3.31 16 13 C 0.05 1.22 5.50 -17.47 -0.10 1.12 16 14 N -0.87 -24.28 13.96 55.50 0.77 -23.50 16 15 Si 0.88 18.47 27.74 -169.99 -4.71 13.75 16 16 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 17 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 18 H -0.27 -5.14 6.52 56.52 0.37 -4.78 16 19 N -0.36 -4.28 3.04 -57.25 -0.17 -4.45 16 20 C 0.27 2.95 11.77 -90.65 -1.07 1.89 16 21 N -0.55 -6.87 11.19 -15.83 -0.18 -7.05 16 22 C 0.20 2.33 13.03 -91.81 -1.20 1.14 16 23 N -0.31 -4.23 12.70 29.29 0.37 -3.85 16 24 H 0.07 0.43 7.22 -51.93 -0.38 0.05 16 25 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.10 0.56 7.56 -51.93 -0.39 0.17 16 27 H 0.41 5.34 6.86 -40.82 -0.28 5.06 16 28 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.37 7.35 5.76 -40.82 -0.24 7.12 16 31 H 0.28 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.22 1.50 7.32 -52.49 -0.38 1.12 16 33 H 0.22 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 296.78 15.07 4.47 4.47 Total: -1.00 -35.02 296.78 -5.64 -40.66 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -3.34 Total: 12.06 kcal Atomic # 6 Polarization: 15.90 SS G_CDS: -2.64 Total: 13.26 kcal Atomic # 7 Polarization: -61.95 SS G_CDS: 0.41 Total: -61.54 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: 0.18 Total: -22.65 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -4.71 Total: 13.75 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -35.02 -5.64 -40.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001459881183.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.970 kcal (2) G-P(sol) polarization free energy of solvation -35.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds