Wall clock time and date at job start Mon Mar 30 2020 00:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47262 * 2 1 4 4 C 1.50702 * 109.47327 * 239.99913 * 2 1 3 5 5 O 1.21277 * 119.99955 * 240.00131 * 4 2 1 6 6 N 1.34781 * 119.99696 * 59.99865 * 4 2 1 7 7 C 1.46506 * 119.99487 * 179.97438 * 6 4 2 8 8 C 1.50709 * 109.46589 * 180.02562 * 7 6 4 9 9 O 1.21286 * 120.00003 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99441 * 180.02562 * 8 7 6 11 11 C 1.37095 * 119.99740 * 179.97438 * 10 8 7 12 12 H 1.08007 * 119.99840 * 0.02562 * 11 10 8 13 13 C 1.38950 * 120.00218 * 179.97438 * 11 10 8 14 14 N 1.31408 * 119.99918 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 119.99833 * 0.02562 * 13 11 10 16 16 H 1.48510 * 109.47208 * 89.99792 * 15 13 11 17 17 H 1.48493 * 109.47150 * 209.99830 * 15 13 11 18 18 H 1.48501 * 109.47181 * 330.00017 * 15 13 11 19 19 N 1.46495 * 109.47183 * 119.99897 * 2 1 3 20 20 C 1.34428 * 126.82196 * 34.99958 * 19 2 1 21 21 N 1.30834 * 108.08033 * 180.02562 * 20 19 2 22 22 C 1.33241 * 109.82716 * 0.02562 * 21 20 19 23 23 N 1.30718 * 108.94820 * 359.97438 * 22 21 20 24 24 H 1.08995 * 109.47086 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47443 * 300.00146 * 1 2 3 26 26 H 1.09002 * 109.46802 * 59.99846 * 1 2 3 27 27 H 0.96998 * 119.99957 * 0.02562 * 6 4 2 28 28 H 1.08997 * 109.47362 * 300.00065 * 7 6 4 29 29 H 1.09000 * 109.46607 * 60.00683 * 7 6 4 30 30 H 0.96996 * 120.00405 * 0.02562 * 10 8 7 31 31 H 0.97008 * 119.99583 * 180.02562 * 14 13 11 32 32 H 1.08001 * 125.96487 * 0.02562 * 20 19 2 33 33 H 1.08002 * 125.52885 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1191 6 7 1.7067 -0.2499 -2.4546 7 6 2.1956 -0.9403 -3.6507 8 6 1.6936 -0.2295 -4.8812 9 8 0.9966 0.7568 -4.7699 10 7 2.0193 -0.6900 -6.1053 11 6 1.5623 -0.0438 -7.2247 12 1 0.9416 0.8345 -7.1256 13 6 1.8984 -0.5182 -8.4867 14 7 1.4599 0.1010 -9.5597 15 14 2.9726 -2.0368 -8.6581 16 1 2.1141 -3.2478 -8.7041 17 1 3.7649 -1.9440 -9.9105 18 1 3.8925 -2.1262 -7.4958 19 7 2.0183 -0.6906 1.1961 20 6 1.4558 -1.7518 1.7998 21 7 2.1931 -2.0693 2.8329 22 6 3.2299 -1.2370 2.9211 23 7 3.1666 -0.3748 1.9406 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.1493 0.5389 -2.5436 28 1 3.2856 -0.9398 -3.6506 29 1 1.8326 -1.9681 -3.6508 30 1 2.5764 -1.4790 -6.1943 31 1 1.6943 -0.2305 -10.4407 32 1 0.5527 -2.2547 1.4868 33 1 3.9984 -1.2699 3.6792 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001459881183.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:12 Heat of formation + Delta-G solvation = 1.610871 kcal Electronic energy + Delta-G solvation = -19540.225274 eV Core-core repulsion = 16216.510760 eV Total energy + Delta-G solvation = -3323.714514 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.11877 -41.19690 -40.09636 -36.35285 -36.08577 -35.45969 -33.84818 -32.37414 -31.24552 -29.35203 -26.65343 -25.77173 -23.26670 -22.83612 -21.51640 -21.33314 -20.58052 -19.07400 -18.23230 -17.42863 -17.02093 -16.91543 -16.66408 -16.14255 -16.10517 -15.65539 -15.23714 -15.11237 -14.82989 -14.33948 -14.11553 -13.95013 -13.50699 -13.40988 -13.29739 -12.98121 -12.50511 -12.45973 -12.02336 -11.59190 -11.57447 -11.05614 -10.79526 -10.70184 -10.58879 -10.38045 -10.29864 -8.46792 -6.08709 0.57117 1.14749 1.29447 1.31500 1.33177 1.42558 1.77433 1.93389 2.03652 2.19049 2.82146 3.09671 3.32218 3.46796 3.50991 3.77137 3.93854 3.98397 4.26358 4.35311 4.35771 4.59245 4.66092 5.04914 5.08888 5.23933 5.45879 5.46896 5.78715 5.87062 6.31017 6.46510 6.77058 6.93172 7.08442 7.27793 7.75579 8.69466 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.043806 B = 0.003551 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.035601 B = 7883.244643 C = 8275.719036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.144 3.856 3 H 0.145 0.855 4 C 0.506 3.494 5 O -0.569 6.569 6 N -0.696 5.696 7 C 0.118 3.882 8 C 0.446 3.554 9 O -0.611 6.611 10 N -0.578 5.578 11 C -0.331 4.331 12 H 0.066 0.934 13 C -0.007 4.007 14 N -0.925 5.925 15 Si 0.957 3.043 16 H -0.256 1.256 17 H -0.275 1.275 18 H -0.234 1.234 19 N -0.368 5.368 20 C 0.270 3.730 21 N -0.573 5.573 22 C 0.195 3.805 23 N -0.350 5.350 24 H 0.085 0.915 25 H 0.100 0.900 26 H 0.106 0.894 27 H 0.419 0.581 28 H 0.099 0.901 29 H 0.109 0.891 30 H 0.391 0.609 31 H 0.281 0.719 32 H 0.248 0.752 33 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.151 -4.534 19.961 20.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.038 3.962 3 H 0.163 0.837 4 C 0.291 3.709 5 O -0.448 6.448 6 N -0.351 5.351 7 C -0.010 4.010 8 C 0.233 3.767 9 O -0.496 6.496 10 N -0.218 5.218 11 C -0.460 4.460 12 H 0.084 0.916 13 C -0.207 4.207 14 N -0.565 5.565 15 Si 0.777 3.223 16 H -0.180 1.180 17 H -0.200 1.200 18 H -0.158 1.158 19 N -0.158 5.158 20 C -0.026 4.026 21 N -0.301 5.301 22 C -0.107 4.107 23 N -0.177 5.177 24 H 0.104 0.896 25 H 0.119 0.881 26 H 0.124 0.876 27 H 0.259 0.741 28 H 0.117 0.883 29 H 0.127 0.873 30 H 0.227 0.773 31 H 0.091 0.909 32 H 0.264 0.736 33 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 0.305 -4.196 19.897 20.337 hybrid contribution 0.294 -0.254 -1.109 1.175 sum 0.599 -4.450 18.788 19.318 Atomic orbital electron populations 1.22270 0.86820 1.05782 1.06706 1.21366 0.98646 0.97674 0.78538 0.83732 1.21039 0.80165 0.84610 0.85047 1.90755 1.39110 1.27892 1.87025 1.45577 1.53133 1.32572 1.03833 1.20902 1.00777 0.96970 0.82333 1.20419 0.84589 0.86719 0.84923 1.90531 1.43029 1.29577 1.86512 1.41941 1.46972 1.27864 1.05023 1.19036 1.31083 1.11699 0.84138 0.91567 1.26035 0.98829 1.01899 0.93923 1.69776 1.45694 1.42037 0.98973 0.85475 0.79006 0.77962 0.79867 1.18016 1.19997 1.15781 1.50184 1.18776 1.25008 1.21815 1.26605 0.99668 0.87262 0.89039 1.70589 1.07991 1.29467 1.22020 1.26602 0.97567 0.89370 0.97204 1.77991 1.04090 1.26640 1.09007 0.89642 0.88126 0.87588 0.74145 0.88262 0.87349 0.77301 0.90922 0.73588 0.74018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 8.75 71.98 0.63 -0.88 16 2 C 0.14 2.52 3.77 44.24 0.17 2.68 16 3 H 0.15 2.19 8.14 -2.38 -0.02 2.18 16 4 C 0.51 12.46 7.22 87.66 0.63 13.09 16 5 O -0.57 -18.56 16.42 -3.02 -0.05 -18.61 16 6 N -0.70 -17.61 5.42 -466.76 -2.53 -20.14 16 7 C 0.12 3.44 6.15 85.63 0.53 3.97 16 8 C 0.45 17.92 7.85 87.66 0.69 18.61 16 9 O -0.61 -28.94 15.24 -3.05 -0.05 -28.98 16 10 N -0.58 -25.21 5.09 -306.98 -1.56 -26.77 16 11 C -0.33 -18.07 10.16 84.04 0.85 -17.22 16 12 H 0.07 4.28 7.39 -2.91 -0.02 4.26 16 13 C -0.01 -0.35 5.50 84.93 0.47 0.12 16 14 N -0.93 -53.16 13.96 21.66 0.30 -52.86 16 15 Si 0.96 37.05 27.74 68.60 1.90 38.95 16 16 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 17 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 18 H -0.23 -7.75 6.52 99.48 0.65 -7.10 16 19 N -0.37 -8.00 3.04 -335.03 -1.02 -9.02 16 20 C 0.27 5.32 11.77 180.36 2.12 7.44 16 21 N -0.57 -13.42 11.19 -203.99 -2.28 -15.70 16 22 C 0.20 4.35 13.03 180.76 2.36 6.70 16 23 N -0.35 -8.99 12.70 -61.24 -0.78 -9.76 16 24 H 0.08 0.67 7.22 -2.39 -0.02 0.66 16 25 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.11 0.90 7.56 -2.39 -0.02 0.88 16 27 H 0.42 10.07 6.86 -92.71 -0.64 9.44 16 28 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 29 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 30 H 0.39 14.35 5.76 -92.71 -0.53 13.81 16 31 H 0.28 14.79 8.31 -92.70 -0.77 14.02 16 32 H 0.25 2.69 7.32 -2.91 -0.02 2.67 16 33 H 0.24 3.44 8.06 -2.91 -0.02 3.41 16 Total: -1.00 -79.00 296.78 2.33 -76.67 By element: Atomic # 1 Polarization: 31.77 SS G_CDS: -0.06 Total: 31.71 kcal Atomic # 6 Polarization: 26.07 SS G_CDS: 8.44 Total: 34.52 kcal Atomic # 7 Polarization: -126.39 SS G_CDS: -7.87 Total: -134.26 kcal Atomic # 8 Polarization: -47.50 SS G_CDS: -0.10 Total: -47.60 kcal Atomic # 14 Polarization: 37.05 SS G_CDS: 1.90 Total: 38.95 kcal Total: -79.00 2.33 -76.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001459881183.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.283 kcal (2) G-P(sol) polarization free energy of solvation -78.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds