Wall clock time and date at job start Mon Mar 30 2020 00:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46501 * 120.00015 * 2 1 4 4 C 1.34775 * 119.99919 * 180.02562 * 2 1 3 5 5 O 1.21281 * 120.00151 * 359.97438 * 4 2 1 6 6 C 1.50701 * 120.00262 * 179.97438 * 4 2 1 7 7 N 1.46493 * 109.47273 * 179.97438 * 6 4 2 8 8 C 1.34846 * 126.59136 * 125.00248 * 7 6 4 9 9 C 1.36666 * 106.82499 * 180.25981 * 8 7 6 10 10 C 1.47438 * 125.77795 * 179.71616 * 9 8 7 11 11 O 1.21620 * 119.99980 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99816 * 180.02562 * 10 9 8 13 13 C 1.36962 * 119.99853 * 179.97438 * 12 10 9 14 14 H 1.08002 * 119.99706 * 359.97438 * 13 12 10 15 15 C 1.38984 * 120.00026 * 179.97438 * 13 12 10 16 16 N 1.31399 * 120.00219 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00106 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47080 * 59.99664 * 17 15 13 19 19 H 1.48495 * 109.47105 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46942 * 299.99708 * 17 15 13 21 21 N 1.34423 * 108.44090 * 359.57096 * 9 8 7 22 22 N 1.28758 * 109.53262 * 0.43731 * 21 9 8 23 23 H 1.09009 * 109.46810 * 269.99773 * 1 2 3 24 24 H 1.09001 * 109.47258 * 29.99222 * 1 2 3 25 25 H 1.08997 * 109.47189 * 150.00280 * 1 2 3 26 26 H 1.08994 * 109.47332 * 270.00086 * 3 2 1 27 27 H 1.08996 * 109.47085 * 30.00646 * 3 2 1 28 28 H 1.09005 * 109.46819 * 149.99777 * 3 2 1 29 29 H 1.08994 * 109.47216 * 59.99373 * 6 4 2 30 30 H 1.09001 * 109.46943 * 300.00110 * 6 4 2 31 31 H 1.08002 * 126.58436 * 359.97438 * 8 7 6 32 32 H 0.96997 * 120.00442 * 359.97438 * 12 10 9 33 33 H 0.97005 * 120.00476 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5325 -2.2175 -0.0005 6 6 3.6459 -1.1673 -0.0011 7 7 4.1341 -2.5484 -0.0010 8 6 4.9872 -3.0995 -0.8881 9 6 5.1615 -4.4020 -0.5127 10 6 6.0113 -5.3911 -1.2007 11 8 6.6334 -5.0710 -2.1956 12 7 6.0980 -6.6501 -0.7277 13 6 6.8870 -7.5691 -1.3672 14 1 7.4393 -7.2848 -2.2506 15 6 6.9768 -8.8673 -0.8792 16 7 6.3051 -9.2130 0.1960 17 14 8.0534 -10.1205 -1.7509 18 1 9.4596 -9.6430 -1.7613 19 1 7.9777 -11.4202 -1.0366 20 1 7.5793 -10.2942 -3.1474 21 7 4.4295 -4.6278 0.5919 22 7 3.8044 -3.5514 0.9215 23 1 -0.3633 0.0000 1.0278 24 1 -0.3634 0.8901 -0.5137 25 1 -0.3633 -0.8900 -0.5138 26 1 2.3792 1.5834 -1.0276 27 1 1.6085 2.0283 0.5139 28 1 3.1499 1.1383 0.5139 29 1 4.0096 -0.6536 0.8887 30 1 4.0089 -0.6533 -0.8911 31 1 5.4415 -2.6074 -1.7354 32 1 5.6016 -6.9055 0.0655 33 1 6.3680 -10.1190 0.5368 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001464717228.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:27 Heat of formation + Delta-G solvation = 40.933008 kcal Electronic energy + Delta-G solvation = -19489.309513 eV Core-core repulsion = 16167.300135 eV Total energy + Delta-G solvation = -3322.009378 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.66976 -40.04511 -37.74355 -35.96173 -34.34123 -33.93546 -31.21900 -30.40934 -29.47123 -27.90345 -26.04392 -25.09224 -22.51840 -21.97032 -20.16197 -19.17388 -17.97823 -17.67574 -17.23189 -16.47100 -16.03717 -15.33047 -15.19333 -14.60739 -14.28868 -14.02962 -13.81268 -13.70356 -13.21680 -13.11417 -13.01443 -12.78334 -12.50643 -12.42965 -11.55263 -11.52638 -11.05300 -10.75003 -10.51484 -10.41400 -10.18011 -9.81128 -9.52195 -9.15457 -8.61813 -8.57879 -7.95859 -6.41682 -3.78535 1.55682 2.13628 2.18939 2.55350 2.67181 3.27666 3.28310 3.32674 3.88783 4.17284 4.30376 4.39915 4.47254 4.63361 4.78866 4.80953 4.90102 4.97064 5.11212 5.18679 5.39513 5.46031 5.50522 5.74834 5.92577 5.95037 6.61405 6.70023 6.84465 7.54336 7.73724 8.05089 8.48460 8.67652 9.15456 9.57160 10.08276 10.74588 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.052010 B = 0.003515 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.227830 B = 7963.751847 C = 8224.859765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.624 5.624 3 C 0.073 3.927 4 C 0.498 3.502 5 O -0.499 6.499 6 C 0.113 3.887 7 N -0.368 5.368 8 C 0.061 3.939 9 C -0.054 4.054 10 C 0.505 3.495 11 O -0.602 6.602 12 N -0.529 5.529 13 C -0.301 4.301 14 H 0.108 0.892 15 C 0.025 3.975 16 N -0.884 5.884 17 Si 0.936 3.064 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.272 1.272 21 N -0.212 5.212 22 N -0.053 5.053 23 H 0.057 0.943 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.122 0.878 30 H 0.129 0.871 31 H 0.199 0.801 32 H 0.403 0.597 33 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.128 22.551 0.780 23.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.360 5.360 3 C -0.071 4.071 4 C 0.283 3.717 5 O -0.372 6.372 6 C -0.013 4.013 7 N -0.156 5.156 8 C -0.093 4.093 9 C -0.193 4.193 10 C 0.290 3.710 11 O -0.488 6.488 12 N -0.162 5.162 13 C -0.431 4.431 14 H 0.125 0.875 15 C -0.179 4.179 16 N -0.523 5.523 17 Si 0.762 3.238 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.197 1.197 21 N -0.087 5.087 22 N -0.032 5.032 23 H 0.075 0.925 24 H 0.090 0.910 25 H 0.097 0.903 26 H 0.080 0.920 27 H 0.096 0.904 28 H 0.092 0.908 29 H 0.140 0.860 30 H 0.147 0.853 31 H 0.216 0.784 32 H 0.238 0.762 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.876 21.627 1.493 23.425 hybrid contribution 0.627 -0.123 -0.762 0.995 sum -8.248 21.504 0.731 23.043 Atomic orbital electron populations 1.21665 0.78438 1.03331 1.02155 1.47689 1.07450 1.05947 1.74951 1.21915 0.97395 0.85382 1.02364 1.20522 0.89643 0.83991 0.77512 1.90857 1.69234 1.30515 1.46549 1.21596 0.92934 0.80103 1.06714 1.49758 1.33167 1.10588 1.22086 1.23149 0.95042 0.94682 0.96380 1.22020 1.05181 0.94950 0.97106 1.16333 0.85953 0.82254 0.86475 1.90602 1.50655 1.79528 1.28035 1.41773 1.40045 1.07756 1.26620 1.19772 1.22777 0.89834 1.10713 0.87457 1.25407 0.97868 0.98281 0.96314 1.69650 1.40450 1.20650 1.21588 0.85846 0.79984 0.78801 0.79158 1.19691 1.20840 1.19684 1.74713 1.05204 1.17457 1.11278 1.81986 1.19223 0.90265 1.11758 0.92466 0.91016 0.90330 0.91964 0.90424 0.90766 0.86019 0.85268 0.78444 0.76233 0.91427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.60 10.44 59.85 0.62 1.22 16 2 N -0.62 -4.77 3.27 -189.51 -0.62 -5.39 16 3 C 0.07 0.22 10.24 59.85 0.61 0.83 16 4 C 0.50 5.78 7.71 -10.99 -0.08 5.69 16 5 O -0.50 -8.63 15.31 5.56 0.09 -8.54 16 6 C 0.11 1.05 5.57 -5.20 -0.03 1.02 16 7 N -0.37 -5.78 3.41 -62.22 -0.21 -5.99 16 8 C 0.06 1.06 11.28 -16.80 -0.19 0.87 16 9 C -0.05 -1.22 6.99 -83.55 -0.58 -1.80 16 10 C 0.51 13.30 7.77 -12.51 -0.10 13.20 16 11 O -0.60 -16.88 16.44 5.26 0.09 -16.80 16 12 N -0.53 -14.83 5.28 -11.95 -0.06 -14.89 16 13 C -0.30 -8.72 9.68 -14.98 -0.15 -8.86 16 14 H 0.11 3.15 7.15 -52.49 -0.38 2.78 16 15 C 0.03 0.70 5.50 -17.46 -0.10 0.60 16 16 N -0.88 -25.12 13.05 55.50 0.72 -24.40 16 17 Si 0.94 21.28 29.55 -169.99 -5.02 16.25 16 18 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 21 N -0.21 -4.84 12.04 32.84 0.40 -4.44 16 22 N -0.05 -1.06 12.88 60.35 0.78 -0.28 16 23 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 24 H 0.07 0.29 8.07 -51.93 -0.42 -0.13 16 25 H 0.08 0.72 7.42 -51.93 -0.39 0.33 16 26 H 0.06 0.12 8.14 -51.93 -0.42 -0.30 16 27 H 0.08 0.13 8.07 -51.93 -0.42 -0.29 16 28 H 0.07 0.12 6.44 -51.93 -0.33 -0.21 16 29 H 0.12 0.76 7.40 -51.93 -0.38 0.38 16 30 H 0.13 0.66 8.05 -51.93 -0.42 0.24 16 31 H 0.20 2.66 8.06 -52.49 -0.42 2.24 16 32 H 0.40 11.33 7.58 -40.82 -0.31 11.02 16 33 H 0.28 7.32 8.31 -40.82 -0.34 6.99 16 LS Contribution 300.57 15.07 4.53 4.53 Total: -1.00 -38.65 300.57 -2.76 -41.41 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -3.45 Total: 5.77 kcal Atomic # 6 Polarization: 12.77 SS G_CDS: 0.01 Total: 12.78 kcal Atomic # 7 Polarization: -56.40 SS G_CDS: 1.00 Total: -55.40 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: 0.17 Total: -25.34 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -38.65 -2.76 -41.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464717228.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.342 kcal (2) G-P(sol) polarization free energy of solvation -38.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds