Wall clock time and date at job start Mon Mar 30 2020 00:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47334 * 2 1 4 4 C 1.34806 * 126.59570 * 124.99347 * 3 2 1 5 5 C 1.36596 * 106.83749 * 179.73513 * 4 3 2 6 6 C 1.47526 * 125.76997 * 180.21696 * 5 4 3 7 7 O 1.21591 * 120.00195 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00050 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00155 * 180.02562 * 8 6 5 10 10 C 1.50699 * 109.47082 * 180.02562 * 9 8 6 11 11 O 1.21288 * 119.99934 * 359.97438 * 10 9 8 12 12 N 1.34781 * 119.99629 * 179.97438 * 10 9 8 13 13 C 1.37094 * 119.99720 * 179.97438 * 12 10 9 14 14 H 1.08006 * 120.00451 * 0.02562 * 13 12 10 15 15 C 1.38946 * 120.00138 * 180.02562 * 13 12 10 16 16 N 1.31414 * 120.00466 * 180.02562 * 15 13 12 17 17 Si 1.86806 * 119.99986 * 359.97438 * 15 13 12 18 18 H 1.48494 * 109.47261 * 90.00023 * 17 15 13 19 19 H 1.48499 * 109.46975 * 210.00260 * 17 15 13 20 20 H 1.48501 * 109.46891 * 330.00098 * 17 15 13 21 21 N 1.34399 * 108.45911 * 0.24576 * 5 4 3 22 22 N 1.28753 * 109.52471 * 359.97438 * 21 5 4 23 23 H 1.09003 * 109.47142 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47529 * 300.00361 * 1 2 3 25 25 H 1.09004 * 109.46633 * 60.00851 * 1 2 3 26 26 H 1.08996 * 109.47180 * 239.99303 * 2 1 3 27 27 H 1.09004 * 109.46807 * 119.99915 * 2 1 3 28 28 H 1.08002 * 126.58390 * 0.02562 * 4 3 2 29 29 H 0.96997 * 119.99957 * 0.02562 * 8 6 5 30 30 H 1.09001 * 109.46717 * 300.00252 * 9 8 6 31 31 H 1.09000 * 109.46813 * 60.00110 * 9 8 6 32 32 H 0.96994 * 120.00331 * 359.97438 * 12 10 9 33 33 H 0.96998 * 120.00395 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8715 1.9320 0.8866 5 6 3.0551 3.2306 0.5049 6 6 3.9172 4.2157 1.1851 7 8 4.5417 3.8944 2.1776 8 7 4.0125 5.4720 0.7064 9 6 4.8691 6.4501 1.3815 10 6 4.7987 7.7672 0.6525 11 8 4.1020 7.8778 -0.3341 12 7 5.5099 8.8223 1.0971 13 6 5.4463 10.0203 0.4336 14 1 4.8260 10.1189 -0.4450 15 6 6.1800 11.1078 0.8915 16 7 6.1187 12.2564 0.2559 17 14 7.2525 10.9377 2.4115 18 1 8.6147 10.5039 2.0102 19 1 7.3348 12.2466 3.1082 20 1 6.6602 9.9274 3.3246 21 7 2.3170 3.4593 -0.5948 22 7 1.6867 2.3850 -0.9211 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.3266 1.4396 1.7333 29 1 3.5140 5.7285 -0.0852 30 1 4.5278 6.5846 2.4079 31 1 5.8981 6.0908 1.3848 32 1 6.0668 8.7339 1.8863 33 1 6.6311 13.0155 0.5754 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001467837125.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:29 Heat of formation + Delta-G solvation = 27.268900 kcal Electronic energy + Delta-G solvation = -19115.222630 eV Core-core repulsion = 15792.620732 eV Total energy + Delta-G solvation = -3322.601898 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.34199 -39.42427 -38.18198 -35.71852 -34.51224 -33.72355 -31.76768 -31.58094 -30.67788 -27.88485 -24.98789 -24.58499 -23.05724 -21.98663 -20.22149 -19.61535 -18.77674 -17.99671 -16.59985 -16.37893 -15.94803 -15.37165 -15.28834 -14.91137 -14.73757 -14.67247 -14.00224 -13.79936 -13.25596 -13.06601 -12.82641 -12.48255 -12.38500 -12.13623 -12.07872 -11.95218 -11.31495 -11.20751 -10.61345 -10.59005 -10.11979 -10.01589 -9.65846 -9.45442 -8.85945 -8.72480 -8.26339 -6.36584 -3.89039 0.97141 1.66627 1.79226 3.02297 3.06744 3.14342 3.23343 3.33863 3.61316 3.95690 4.06915 4.09736 4.32508 4.53663 4.57646 4.63997 4.83289 4.97922 5.03172 5.17786 5.28272 5.53064 5.63677 5.75392 5.81237 5.82866 6.13551 6.54570 7.47641 7.62896 7.91211 8.04548 8.30872 8.49990 8.86265 9.33960 9.68092 10.75693 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.052965 B = 0.003249 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.519776 B = 8615.709386 C = 9063.614762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.118 3.882 3 N -0.364 5.364 4 C 0.091 3.909 5 C -0.096 4.096 6 C 0.603 3.397 7 O -0.550 6.550 8 N -0.691 5.691 9 C 0.106 3.894 10 C 0.438 3.562 11 O -0.573 6.573 12 N -0.577 5.577 13 C -0.309 4.309 14 H 0.122 0.878 15 C 0.044 3.956 16 N -0.875 5.875 17 Si 0.879 3.121 18 H -0.269 1.269 19 H -0.275 1.275 20 H -0.267 1.267 21 N -0.198 5.198 22 N -0.064 5.064 23 H 0.082 0.918 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.098 0.902 27 H 0.104 0.896 28 H 0.205 0.795 29 H 0.421 0.579 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.374 0.626 33 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.239 -24.970 4.446 26.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.002 4.002 3 N -0.150 5.150 4 C -0.066 4.066 5 C -0.236 4.236 6 C 0.387 3.613 7 O -0.428 6.428 8 N -0.344 5.344 9 C -0.022 4.022 10 C 0.224 3.776 11 O -0.457 6.457 12 N -0.215 5.215 13 C -0.437 4.437 14 H 0.140 0.860 15 C -0.160 4.160 16 N -0.514 5.514 17 Si 0.705 3.295 18 H -0.194 1.194 19 H -0.200 1.200 20 H -0.192 1.192 21 N -0.071 5.071 22 N -0.045 5.045 23 H 0.101 0.899 24 H 0.083 0.917 25 H 0.094 0.906 26 H 0.117 0.883 27 H 0.123 0.877 28 H 0.221 0.779 29 H 0.260 0.740 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.207 0.793 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.014 -24.538 3.197 25.720 hybrid contribution 1.218 -0.197 1.725 2.121 sum -5.797 -24.735 4.922 25.878 Atomic orbital electron populations 1.22092 0.92749 1.03629 1.04167 1.22021 0.96887 0.76275 1.05059 1.50638 1.31841 1.12316 1.20206 1.23350 0.93265 0.94012 0.95951 1.21456 1.07805 0.95111 0.99202 1.16688 0.80380 0.81189 0.83088 1.90785 1.46719 1.79364 1.25885 1.45503 1.47152 1.09461 1.32265 1.21037 0.95830 0.88451 0.96840 1.19622 0.85179 0.85162 0.87673 1.90571 1.43478 1.83655 1.27978 1.42108 1.41588 1.10774 1.27071 1.19452 1.27606 0.85027 1.11640 0.86048 1.25064 0.97690 0.95071 0.98139 1.69620 1.40777 1.01382 1.39668 0.86667 0.81321 0.78695 0.82775 1.19433 1.20045 1.19208 1.74732 1.04355 1.17981 1.10077 1.81995 1.20326 0.90271 1.11860 0.89935 0.91659 0.90627 0.88349 0.87729 0.77851 0.73961 0.89382 0.89363 0.79264 0.91430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.71 10.11 37.16 0.38 -0.33 16 2 C 0.12 0.51 7.26 -4.04 -0.03 0.48 16 3 N -0.36 -3.36 3.69 -61.06 -0.23 -3.59 16 4 C 0.09 0.91 11.27 -16.84 -0.19 0.72 16 5 C -0.10 -1.35 6.99 -83.55 -0.58 -1.94 16 6 C 0.60 9.75 7.82 -12.47 -0.10 9.65 16 7 O -0.55 -9.54 16.86 5.29 0.09 -9.46 16 8 N -0.69 -12.06 5.52 -62.53 -0.35 -12.41 16 9 C 0.11 1.88 6.15 -5.19 -0.03 1.85 16 10 C 0.44 9.89 7.85 -10.98 -0.09 9.81 16 11 O -0.57 -15.08 15.24 5.55 0.08 -14.99 16 12 N -0.58 -13.62 5.09 -10.96 -0.06 -13.67 16 13 C -0.31 -8.63 10.16 -14.94 -0.15 -8.78 16 14 H 0.12 3.87 7.39 -52.48 -0.39 3.48 16 15 C 0.04 1.20 5.50 -17.47 -0.10 1.11 16 16 N -0.88 -25.29 13.96 55.50 0.77 -24.51 16 17 Si 0.88 19.14 27.74 -169.99 -4.71 14.42 16 18 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 19 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 20 H -0.27 -5.29 6.52 56.52 0.37 -4.92 16 21 N -0.20 -3.03 12.04 32.85 0.40 -2.64 16 22 N -0.06 -0.85 13.64 60.35 0.82 -0.02 16 23 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 24 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.10 0.15 8.08 -51.93 -0.42 -0.27 16 28 H 0.20 1.30 8.06 -52.49 -0.42 0.88 16 29 H 0.42 7.81 7.12 -40.82 -0.29 7.52 16 30 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 31 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 32 H 0.37 7.72 5.76 -40.82 -0.24 7.48 16 33 H 0.28 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 301.21 15.07 4.54 4.54 Total: -1.00 -35.03 301.21 -2.99 -38.02 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -3.46 Total: 11.76 kcal Atomic # 6 Polarization: 13.44 SS G_CDS: -0.89 Total: 12.55 kcal Atomic # 7 Polarization: -58.21 SS G_CDS: 1.37 Total: -56.85 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: 0.17 Total: -24.45 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -4.71 Total: 14.42 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -35.03 -2.99 -38.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467837125.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.289 kcal (2) G-P(sol) polarization free energy of solvation -35.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds