Wall clock time and date at job start Mon Mar 30 2020 00:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47334 * 2 1 4 4 C 1.34806 * 126.59570 * 124.99347 * 3 2 1 5 5 C 1.36596 * 106.83749 * 179.73513 * 4 3 2 6 6 C 1.47526 * 125.76997 * 180.21696 * 5 4 3 7 7 O 1.21591 * 120.00195 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00050 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00155 * 180.02562 * 8 6 5 10 10 C 1.50699 * 109.47082 * 180.02562 * 9 8 6 11 11 O 1.21288 * 119.99934 * 359.97438 * 10 9 8 12 12 N 1.34781 * 119.99629 * 179.97438 * 10 9 8 13 13 C 1.37094 * 119.99720 * 179.97438 * 12 10 9 14 14 H 1.08006 * 120.00451 * 0.02562 * 13 12 10 15 15 C 1.38946 * 120.00138 * 180.02562 * 13 12 10 16 16 N 1.31414 * 120.00466 * 180.02562 * 15 13 12 17 17 Si 1.86806 * 119.99986 * 359.97438 * 15 13 12 18 18 H 1.48494 * 109.47261 * 90.00023 * 17 15 13 19 19 H 1.48499 * 109.46975 * 210.00260 * 17 15 13 20 20 H 1.48501 * 109.46891 * 330.00098 * 17 15 13 21 21 N 1.34399 * 108.45911 * 0.24576 * 5 4 3 22 22 N 1.28753 * 109.52471 * 359.97438 * 21 5 4 23 23 H 1.09003 * 109.47142 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47529 * 300.00361 * 1 2 3 25 25 H 1.09004 * 109.46633 * 60.00851 * 1 2 3 26 26 H 1.08996 * 109.47180 * 239.99303 * 2 1 3 27 27 H 1.09004 * 109.46807 * 119.99915 * 2 1 3 28 28 H 1.08002 * 126.58390 * 0.02562 * 4 3 2 29 29 H 0.96997 * 119.99957 * 0.02562 * 8 6 5 30 30 H 1.09001 * 109.46717 * 300.00252 * 9 8 6 31 31 H 1.09000 * 109.46813 * 60.00110 * 9 8 6 32 32 H 0.96994 * 120.00331 * 359.97438 * 12 10 9 33 33 H 0.96998 * 120.00395 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8715 1.9320 0.8866 5 6 3.0551 3.2306 0.5049 6 6 3.9172 4.2157 1.1851 7 8 4.5417 3.8944 2.1776 8 7 4.0125 5.4720 0.7064 9 6 4.8691 6.4501 1.3815 10 6 4.7987 7.7672 0.6525 11 8 4.1020 7.8778 -0.3341 12 7 5.5099 8.8223 1.0971 13 6 5.4463 10.0203 0.4336 14 1 4.8260 10.1189 -0.4450 15 6 6.1800 11.1078 0.8915 16 7 6.1187 12.2564 0.2559 17 14 7.2525 10.9377 2.4115 18 1 8.6147 10.5039 2.0102 19 1 7.3348 12.2466 3.1082 20 1 6.6602 9.9274 3.3246 21 7 2.3170 3.4593 -0.5948 22 7 1.6867 2.3850 -0.9211 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.3266 1.4396 1.7333 29 1 3.5140 5.7285 -0.0852 30 1 4.5278 6.5846 2.4079 31 1 5.8981 6.0908 1.3848 32 1 6.0668 8.7339 1.8863 33 1 6.6311 13.0155 0.5754 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001467837125.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:28 Heat of formation + Delta-G solvation = -2.782891 kcal Electronic energy + Delta-G solvation = -19116.525773 eV Core-core repulsion = 15792.620732 eV Total energy + Delta-G solvation = -3323.905042 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.23376 -40.89662 -39.84666 -36.38946 -36.26794 -35.32955 -33.83006 -32.36686 -31.51282 -29.37953 -26.46804 -25.51571 -24.24508 -22.72454 -21.47377 -21.33570 -20.55081 -19.21433 -17.70984 -17.39358 -17.22667 -16.86719 -16.60862 -16.54965 -15.68890 -15.56696 -15.46211 -15.03783 -14.81993 -14.29559 -14.02061 -13.83554 -13.57350 -13.34908 -13.05167 -12.94939 -12.56107 -12.43325 -12.02819 -11.98216 -11.57032 -11.35254 -11.32147 -10.65844 -10.45533 -10.32010 -10.11805 -8.44217 -6.06757 0.16893 0.58904 1.14727 1.32634 1.35832 1.46077 1.80152 1.97261 2.20341 2.22468 2.85843 3.11719 3.18379 3.42397 3.81855 3.95511 4.01402 4.03509 4.30822 4.34379 4.39981 4.43195 4.64530 4.76769 4.94417 5.18469 5.24790 5.49561 5.51782 5.88990 6.35111 6.50104 6.79455 6.87369 7.05637 7.29875 7.80325 8.72490 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.052965 B = 0.003249 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.519776 B = 8615.709386 C = 9063.614762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.106 3.894 3 N -0.349 5.349 4 C 0.118 3.882 5 C -0.130 4.130 6 C 0.609 3.391 7 O -0.561 6.561 8 N -0.703 5.703 9 C 0.118 3.882 10 C 0.442 3.558 11 O -0.616 6.616 12 N -0.576 5.576 13 C -0.333 4.333 14 H 0.060 0.940 15 C -0.010 4.010 16 N -0.928 5.928 17 Si 0.962 3.038 18 H -0.256 1.256 19 H -0.274 1.274 20 H -0.230 1.230 21 N -0.235 5.235 22 N -0.090 5.090 23 H 0.111 0.889 24 H 0.055 0.945 25 H 0.051 0.949 26 H 0.114 0.886 27 H 0.146 0.854 28 H 0.246 0.754 29 H 0.414 0.586 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.393 0.607 33 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.131 -28.267 7.419 29.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.012 4.012 3 N -0.134 5.134 4 C -0.040 4.040 5 C -0.270 4.270 6 C 0.394 3.606 7 O -0.440 6.440 8 N -0.355 5.355 9 C -0.009 4.009 10 C 0.230 3.770 11 O -0.502 6.502 12 N -0.216 5.216 13 C -0.462 4.462 14 H 0.078 0.922 15 C -0.210 4.210 16 N -0.567 5.567 17 Si 0.782 3.218 18 H -0.180 1.180 19 H -0.199 1.199 20 H -0.153 1.153 21 N -0.108 5.108 22 N -0.071 5.071 23 H 0.129 0.871 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.132 0.868 27 H 0.164 0.836 28 H 0.262 0.738 29 H 0.251 0.749 30 H 0.131 0.869 31 H 0.132 0.868 32 H 0.230 0.770 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.933 -27.890 6.164 29.173 hybrid contribution 0.745 0.686 0.698 1.230 sum -5.188 -27.204 6.862 28.531 Atomic orbital electron populations 1.22090 0.92800 1.04972 1.02556 1.22607 0.96881 0.73820 1.07892 1.51024 1.30536 1.13196 1.18627 1.23905 0.91710 0.92464 0.95936 1.21425 1.09071 0.96429 1.00038 1.16860 0.80145 0.80781 0.82790 1.90763 1.47379 1.79484 1.26337 1.45604 1.47475 1.10163 1.32290 1.20997 0.97606 0.85417 0.96859 1.20572 0.83168 0.86482 0.86825 1.90558 1.44882 1.84726 1.30047 1.41886 1.42488 1.09622 1.27629 1.19027 1.28261 0.87684 1.11197 0.92189 1.26124 0.98826 0.93798 1.02234 1.69791 1.42136 1.02664 1.42145 0.85398 0.79027 0.79754 0.77629 1.17986 1.19863 1.15270 1.74710 1.05449 1.19423 1.11242 1.81900 1.20910 0.90904 1.13364 0.87095 0.92562 0.92935 0.86799 0.83596 0.73780 0.74865 0.86908 0.86795 0.77033 0.90912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.01 10.11 71.98 0.73 -0.28 16 2 C 0.11 0.53 7.26 86.38 0.63 1.16 16 3 N -0.35 -5.60 3.69 -347.10 -1.28 -6.88 16 4 C 0.12 2.01 11.27 83.85 0.95 2.96 16 5 C -0.13 -3.50 6.99 40.82 0.29 -3.21 16 6 C 0.61 18.85 7.82 86.69 0.68 19.53 16 7 O -0.56 -18.01 16.86 -4.00 -0.07 -18.07 16 8 N -0.70 -24.20 5.52 -470.01 -2.60 -26.79 16 9 C 0.12 3.98 6.15 85.63 0.53 4.51 16 10 C 0.44 20.08 7.85 87.66 0.69 20.77 16 11 O -0.62 -33.85 15.24 -3.05 -0.05 -33.90 16 12 N -0.58 -27.04 5.09 -306.98 -1.56 -28.60 16 13 C -0.33 -19.33 10.16 84.04 0.85 -18.47 16 14 H 0.06 4.14 7.39 -2.91 -0.02 4.12 16 15 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 16 N -0.93 -55.41 13.96 21.66 0.30 -55.11 16 17 Si 0.96 38.32 27.74 68.60 1.90 40.22 16 18 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 19 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 20 H -0.23 -7.70 6.52 99.48 0.65 -7.05 16 21 N -0.24 -7.28 12.04 -49.99 -0.60 -7.88 16 22 N -0.09 -2.36 13.64 37.02 0.51 -1.85 16 23 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 24 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 25 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 26 H 0.11 0.31 8.14 -2.39 -0.02 0.30 16 27 H 0.15 -0.38 8.08 -2.39 -0.02 -0.40 16 28 H 0.25 1.91 8.06 -2.91 -0.02 1.89 16 29 H 0.41 15.78 7.12 -92.71 -0.66 15.12 16 30 H 0.11 3.30 8.14 -2.39 -0.02 3.28 16 31 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16 32 H 0.39 15.23 5.76 -92.71 -0.53 14.70 16 33 H 0.28 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -82.52 301.21 2.27 -80.25 By element: Atomic # 1 Polarization: 31.83 SS G_CDS: -0.08 Total: 31.75 kcal Atomic # 6 Polarization: 21.07 SS G_CDS: 5.80 Total: 26.87 kcal Atomic # 7 Polarization: -121.88 SS G_CDS: -5.24 Total: -127.12 kcal Atomic # 8 Polarization: -51.86 SS G_CDS: -0.11 Total: -51.97 kcal Atomic # 14 Polarization: 38.32 SS G_CDS: 1.90 Total: 40.22 kcal Total: -82.52 2.27 -80.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467837125.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.465 kcal (2) G-P(sol) polarization free energy of solvation -82.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds