Wall clock time and date at job start Mon Mar 30 2020 00:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28723 * 125.31922 * 2 1 4 4 N 1.28978 * 108.98661 * 179.97438 * 3 2 1 5 5 C 1.34186 * 107.25470 * 359.97438 * 4 3 2 6 6 C 1.48004 * 126.69669 * 179.97438 * 5 4 3 7 7 O 1.21542 * 119.99960 * 180.02562 * 6 5 4 8 8 N 1.34770 * 120.00539 * 0.02812 * 6 5 4 9 9 C 1.47433 * 125.64428 * 359.95740 * 8 6 5 10 10 C 1.55393 * 104.87396 * 204.16622 * 9 8 6 11 11 C 1.55158 * 101.36604 * 323.02138 * 10 9 8 12 12 O 1.42905 * 110.71665 * 277.04214 * 11 10 9 13 13 C 1.50698 * 110.72071 * 153.94900 * 11 10 9 14 14 H 1.08000 * 120.00108 * 2.43313 * 13 11 10 15 15 C 1.37875 * 119.99880 * 182.43864 * 13 11 10 16 16 N 1.31516 * 120.00122 * 359.97438 * 15 13 11 17 17 Si 1.86797 * 120.00107 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47033 * 59.99945 * 17 15 13 19 19 H 1.48501 * 109.47466 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.47176 * 300.00326 * 17 15 13 21 21 C 1.47023 * 125.65372 * 179.97438 * 8 6 5 22 22 N 1.28867 * 125.32035 * 180.30674 * 2 1 3 23 23 H 1.09003 * 109.46828 * 89.98372 * 1 2 3 24 24 H 1.09004 * 109.47330 * 209.97558 * 1 2 3 25 25 H 1.08997 * 109.47350 * 329.98122 * 1 2 3 26 26 H 1.08994 * 110.36621 * 323.00423 * 9 8 6 27 27 H 1.09005 * 110.36538 * 85.21633 * 9 8 6 28 28 H 1.09003 * 111.18887 * 204.98028 * 10 9 8 29 29 H 1.08998 * 111.02037 * 80.98017 * 10 9 8 30 30 H 0.96696 * 114.00036 * 177.55969 * 12 11 10 31 31 H 0.97000 * 119.99972 * 179.97438 * 16 15 13 32 32 H 1.09001 * 109.87979 * 59.49193 * 21 8 6 33 33 H 1.08999 * 110.00722 * 298.39314 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2092 1.0503 0.0000 4 7 3.4469 0.6876 0.0005 5 6 3.4685 -0.6541 0.0015 6 6 4.6693 -1.5193 0.0018 7 8 4.5470 -2.7286 0.0022 8 7 5.8984 -0.9664 0.0018 9 6 6.1904 0.4787 0.0005 10 6 7.6127 0.5977 -0.6139 11 6 8.3058 -0.6600 -0.0263 12 8 8.7878 -0.4012 1.2939 13 6 9.4285 -1.1174 -0.9215 14 1 9.6732 -0.5555 -1.8108 15 6 10.1432 -2.2532 -0.6054 16 7 9.8455 -2.9373 0.4777 17 14 11.5344 -2.8206 -1.7154 18 1 12.5679 -1.7573 -1.7965 19 1 12.1387 -4.0576 -1.1588 20 1 11.0021 -3.0981 -3.0737 21 6 7.1700 -1.7044 0.0026 22 7 2.2100 -1.0515 -0.0056 23 1 -0.3633 0.0003 -1.0277 24 1 -0.3634 -0.8902 0.5135 25 1 -0.3634 0.8898 0.5141 26 1 5.4658 1.0115 -0.6152 27 1 6.1816 0.8684 1.0184 28 1 8.1103 1.5090 -0.2821 29 1 7.5738 0.5497 -1.7022 30 1 9.1965 -1.1667 1.7205 31 1 10.3482 -3.7366 0.7000 32 1 7.2296 -2.3411 -0.8801 33 1 7.2479 -2.3121 0.9041 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001469405620.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:58 Heat of formation + Delta-G solvation = 35.236766 kcal Electronic energy + Delta-G solvation = -20479.558221 eV Core-core repulsion = 17157.301835 eV Total energy + Delta-G solvation = -3322.256386 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.57067 -41.09990 -39.05210 -36.50324 -35.98512 -34.36128 -34.18563 -31.96439 -30.15883 -29.33128 -27.55803 -25.97881 -24.19885 -23.93416 -21.54256 -21.21893 -19.17332 -18.92357 -18.74241 -17.84391 -17.40914 -16.87360 -16.66780 -16.12454 -15.30866 -14.93017 -14.82556 -14.75992 -14.33023 -14.22040 -13.85326 -13.50628 -13.34707 -13.20096 -12.82661 -12.60290 -12.36736 -12.30647 -12.26610 -12.25404 -11.98518 -11.56513 -11.47566 -11.15997 -10.62505 -10.30629 -9.76097 -8.25060 -6.40867 -0.21009 0.23468 0.79131 1.45697 1.46530 1.54429 1.65569 1.83588 2.39905 2.70050 3.00484 3.01880 3.77449 3.81321 4.02022 4.07562 4.21015 4.24511 4.39371 4.50126 4.59781 4.65443 4.79321 4.97943 4.98904 5.12069 5.17746 5.35141 5.47801 5.75329 6.04934 6.31340 6.64148 6.71277 7.01422 7.30241 7.38514 8.81239 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.041327 B = 0.004717 C = 0.004505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.363285 B = 5934.562349 C = 6213.545658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.113 5.113 3 N -0.058 5.058 4 N -0.261 5.261 5 C 0.125 3.875 6 C 0.613 3.387 7 O -0.560 6.560 8 N -0.589 5.589 9 C 0.108 3.892 10 C -0.111 4.111 11 C 0.235 3.765 12 O -0.586 6.586 13 C -0.558 4.558 14 H 0.070 0.930 15 C 0.028 3.972 16 N -0.916 5.916 17 Si 0.964 3.036 18 H -0.268 1.268 19 H -0.284 1.284 20 H -0.273 1.273 21 C 0.120 3.880 22 N -0.262 5.262 23 H 0.131 0.869 24 H 0.130 0.870 25 H 0.146 0.854 26 H 0.105 0.895 27 H 0.073 0.927 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.378 0.622 31 H 0.271 0.729 32 H 0.047 0.953 33 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.985 7.860 -1.379 18.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.029 5.029 3 N -0.051 5.051 4 N -0.135 5.135 5 C -0.158 4.158 6 C 0.396 3.604 7 O -0.437 6.437 8 N -0.320 5.320 9 C -0.014 4.014 10 C -0.149 4.149 11 C 0.194 3.806 12 O -0.395 6.395 13 C -0.596 4.596 14 H 0.088 0.912 15 C -0.173 4.173 16 N -0.555 5.555 17 Si 0.789 3.211 18 H -0.193 1.193 19 H -0.210 1.210 20 H -0.198 1.198 21 C -0.002 4.002 22 N -0.118 5.118 23 H 0.150 0.850 24 H 0.149 0.851 25 H 0.164 0.836 26 H 0.123 0.877 27 H 0.091 0.909 28 H 0.113 0.887 29 H 0.105 0.895 30 H 0.228 0.772 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -17.686 8.167 -1.401 19.531 hybrid contribution 1.240 -1.814 -0.175 2.204 sum -16.446 6.354 -1.576 17.701 Atomic orbital electron populations 1.23299 0.64731 1.09553 1.08819 1.50850 1.12754 0.99399 1.39890 1.78832 0.96088 1.14412 1.15780 1.76184 1.10810 1.09506 1.17014 1.24758 0.92717 0.90454 1.07896 1.16063 0.80621 0.85327 0.78350 1.90788 1.85809 1.14456 1.52598 1.48541 1.04432 1.10512 1.68559 1.22729 0.97734 0.78826 1.02112 1.22872 0.93127 0.98570 1.00288 1.19705 0.89109 0.90176 0.81564 1.86100 1.80260 1.41902 1.31233 1.21811 1.16968 1.10723 1.10139 0.91186 1.25799 0.99290 0.95770 0.96457 1.69731 1.41738 1.18119 1.25950 0.85511 0.79106 0.77565 0.78876 1.19327 1.20986 1.19786 1.22796 0.81434 0.96200 0.99805 1.75049 1.02127 1.15551 1.19028 0.85047 0.85121 0.83593 0.87728 0.90880 0.88719 0.89510 0.77236 0.91914 0.93462 0.93849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.42 11.62 127.77 1.49 1.91 16 2 N -0.11 -2.43 4.39 -206.58 -0.91 -3.34 16 3 N -0.06 -1.48 13.23 37.02 0.49 -0.99 16 4 N -0.26 -8.33 9.68 -52.36 -0.51 -8.84 16 5 C 0.12 4.49 7.95 137.15 1.09 5.58 16 6 C 0.61 26.67 7.86 86.83 0.68 27.35 16 7 O -0.56 -27.90 17.43 -3.85 -0.07 -27.97 16 8 N -0.59 -25.63 3.33 -814.02 -2.71 -28.33 16 9 C 0.11 3.98 6.16 87.02 0.54 4.52 16 10 C -0.11 -4.38 6.26 32.16 0.20 -4.17 16 11 C 0.23 11.44 0.85 -10.35 -0.01 11.44 16 12 O -0.59 -29.80 13.07 -148.98 -1.95 -31.75 16 13 C -0.56 -29.10 8.11 25.60 0.21 -28.90 16 14 H 0.07 3.53 7.77 -2.91 -0.02 3.51 16 15 C 0.03 1.45 5.27 84.65 0.45 1.90 16 16 N -0.92 -49.37 10.96 21.45 0.23 -49.14 16 17 Si 0.96 41.73 29.54 68.60 2.03 43.76 16 18 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 19 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 20 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 21 C 0.12 5.98 5.38 86.73 0.47 6.45 16 22 N -0.26 -8.04 12.17 -52.32 -0.64 -8.67 16 23 H 0.13 0.18 8.14 -2.39 -0.02 0.16 16 24 H 0.13 0.40 8.14 -2.38 -0.02 0.38 16 25 H 0.15 0.02 8.14 -2.39 -0.02 0.00 16 26 H 0.10 3.44 6.19 -2.39 -0.01 3.43 16 27 H 0.07 2.67 8.14 -2.38 -0.02 2.65 16 28 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 29 H 0.09 3.25 8.04 -2.39 -0.02 3.23 16 30 H 0.38 19.94 7.23 -74.06 -0.54 19.41 16 31 H 0.27 14.04 8.31 -92.71 -0.77 13.27 16 32 H 0.05 2.55 7.81 -2.39 -0.02 2.53 16 33 H 0.04 2.37 8.00 -2.39 -0.02 2.35 16 Total: -1.00 -69.53 288.64 1.71 -67.82 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: 0.62 Total: 21.37 kcal Atomic # 6 Polarization: 20.96 SS G_CDS: 5.11 Total: 26.07 kcal Atomic # 7 Polarization: -95.28 SS G_CDS: -4.03 Total: -99.31 kcal Atomic # 8 Polarization: -57.70 SS G_CDS: -2.01 Total: -59.72 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Total: -69.53 1.71 -67.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001469405620.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.059 kcal (2) G-P(sol) polarization free energy of solvation -69.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds