Wall clock time and date at job start Mon Mar 30 2020 00:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28721 * 125.31836 * 2 1 4 4 N 1.28984 * 108.98622 * 179.79446 * 3 2 1 5 5 C 1.34192 * 107.25286 * 0.37592 * 4 3 2 6 6 C 1.47998 * 126.69732 * 179.89133 * 5 4 3 7 7 O 1.21540 * 119.99744 * 179.69042 * 6 5 4 8 8 N 1.34770 * 120.00167 * 359.68716 * 6 5 4 9 9 C 1.47422 * 125.65124 * 359.97438 * 8 6 5 10 10 C 1.54909 * 104.83564 * 155.91495 * 9 8 6 11 11 C 1.55152 * 101.58032 * 37.00513 * 10 9 8 12 12 O 1.42903 * 110.72100 * 82.86680 * 11 10 9 13 13 C 1.50703 * 110.71825 * 205.95483 * 11 10 9 14 14 H 1.07993 * 120.00249 * 357.56786 * 13 11 10 15 15 C 1.37877 * 119.99923 * 177.55974 * 13 11 10 16 16 N 1.31521 * 120.00053 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 120.00236 * 180.02562 * 15 13 11 18 18 H 1.48492 * 109.47095 * 90.00027 * 17 15 13 19 19 H 1.48504 * 109.47221 * 210.00342 * 17 15 13 20 20 H 1.48506 * 109.46864 * 330.00097 * 17 15 13 21 21 C 1.47027 * 125.65010 * 180.02562 * 8 6 5 22 22 N 1.28866 * 125.31990 * 180.02562 * 2 1 3 23 23 H 1.08994 * 109.47739 * 269.95745 * 1 2 3 24 24 H 1.09010 * 109.47126 * 29.95788 * 1 2 3 25 25 H 1.09002 * 109.47157 * 149.95644 * 1 2 3 26 26 H 1.09002 * 110.36847 * 37.06750 * 9 8 6 27 27 H 1.09005 * 110.45737 * 274.79985 * 9 8 6 28 28 H 1.09005 * 111.00113 * 278.93173 * 10 9 8 29 29 H 1.08998 * 111.03822 * 155.09465 * 10 9 8 30 30 H 0.96700 * 114.00311 * 179.97438 * 12 11 10 31 31 H 0.97000 * 119.99959 * 179.97438 * 16 15 13 32 32 H 1.09003 * 109.87825 * 61.59771 * 21 8 6 33 33 H 1.09001 * 109.88209 * 300.43826 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2091 1.0503 0.0000 4 7 3.4469 0.6876 0.0044 5 6 3.4685 -0.6541 -0.0012 6 6 4.6692 -1.5194 -0.0014 7 8 4.5469 -2.7286 -0.0011 8 7 5.8983 -0.9664 -0.0019 9 6 6.1904 0.4786 -0.0029 10 6 7.6091 0.5969 0.6080 11 6 8.3057 -0.6601 0.0232 12 8 8.7864 -0.4032 -1.2978 13 6 9.4303 -1.1117 0.9191 14 1 9.6736 -0.5468 1.8068 15 6 10.1484 -2.2461 0.6055 16 7 9.8523 -2.9339 -0.4758 17 14 11.5418 -2.8064 1.7163 18 1 11.0098 -3.7298 2.7503 19 1 12.5688 -3.5093 0.9060 20 1 12.1547 -1.6252 2.3756 21 6 7.1699 -1.7044 -0.0026 22 7 2.2100 -1.0515 -0.0005 23 1 -0.3634 -0.0008 1.0276 24 1 -0.3634 0.8904 -0.5132 25 1 -0.3633 -0.8896 -0.5145 26 1 5.4665 1.0124 0.6128 27 1 6.1820 0.8683 -1.0208 28 1 7.5708 0.5516 1.6964 29 1 8.1040 1.5088 0.2742 30 1 9.2308 -1.1576 -1.7084 31 1 10.3578 -3.7318 -0.6966 32 1 7.2453 -2.3120 -0.9045 33 1 7.2304 -2.3397 0.8810 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001469405625.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:01 Heat of formation + Delta-G solvation = 35.044976 kcal Electronic energy + Delta-G solvation = -20479.223037 eV Core-core repulsion = 17156.958335 eV Total energy + Delta-G solvation = -3322.264702 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -45.57011 -41.10749 -39.06043 -36.50695 -35.99481 -34.36141 -34.18327 -31.97735 -30.16840 -29.34015 -27.56136 -25.98218 -24.19218 -23.93070 -21.54191 -21.21927 -19.18328 -18.93155 -18.74161 -17.84588 -17.41333 -16.87818 -16.66835 -16.11161 -15.30727 -14.92823 -14.82650 -14.77690 -14.33232 -14.21740 -13.85422 -13.51554 -13.35632 -13.20238 -12.85193 -12.60421 -12.37072 -12.28813 -12.26095 -12.25005 -11.98130 -11.56421 -11.47678 -11.15455 -10.63583 -10.31108 -9.76056 -8.25557 -6.41566 -0.21009 0.23412 0.79134 1.44098 1.46548 1.56094 1.65570 1.83587 2.39629 2.69988 3.00386 3.01502 3.77692 3.81749 4.01938 4.08294 4.20626 4.24554 4.39071 4.49960 4.59804 4.65996 4.79684 4.97869 4.98686 5.12445 5.17944 5.35364 5.47873 5.75204 6.03858 6.31331 6.64082 6.71222 7.01401 7.30007 7.38269 8.80833 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.041396 B = 0.004714 C = 0.004503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.234284 B = 5938.829361 C = 6216.261250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.113 5.113 3 N -0.058 5.058 4 N -0.261 5.261 5 C 0.125 3.875 6 C 0.613 3.387 7 O -0.560 6.560 8 N -0.589 5.589 9 C 0.108 3.892 10 C -0.112 4.112 11 C 0.235 3.765 12 O -0.587 6.587 13 C -0.557 4.557 14 H 0.070 0.930 15 C 0.027 3.973 16 N -0.916 5.916 17 Si 0.965 3.035 18 H -0.279 1.279 19 H -0.282 1.282 20 H -0.265 1.265 21 C 0.120 3.880 22 N -0.262 5.262 23 H 0.132 0.868 24 H 0.146 0.854 25 H 0.130 0.870 26 H 0.105 0.895 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.378 0.622 31 H 0.272 0.728 32 H 0.042 0.958 33 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.920 7.883 1.409 18.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.029 5.029 3 N -0.051 5.051 4 N -0.135 5.135 5 C -0.158 4.158 6 C 0.396 3.604 7 O -0.437 6.437 8 N -0.320 5.320 9 C -0.014 4.014 10 C -0.149 4.149 11 C 0.194 3.806 12 O -0.395 6.395 13 C -0.595 4.595 14 H 0.089 0.911 15 C -0.174 4.174 16 N -0.556 5.556 17 Si 0.790 3.210 18 H -0.204 1.204 19 H -0.207 1.207 20 H -0.189 1.189 21 C -0.002 4.002 22 N -0.118 5.118 23 H 0.150 0.850 24 H 0.164 0.836 25 H 0.149 0.851 26 H 0.123 0.877 27 H 0.091 0.909 28 H 0.105 0.895 29 H 0.113 0.887 30 H 0.228 0.772 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -17.644 8.188 1.419 19.503 hybrid contribution 1.252 -1.818 0.178 2.215 sum -16.392 6.370 1.597 17.659 Atomic orbital electron populations 1.23300 0.64730 1.09552 1.08824 1.50849 1.12754 0.99398 1.39889 1.78833 0.96090 1.14412 1.15778 1.76187 1.10807 1.09504 1.17018 1.24757 0.92715 0.90455 1.07894 1.16062 0.80626 0.85328 0.78350 1.90787 1.85811 1.14462 1.52602 1.48547 1.04435 1.10503 1.68555 1.22645 0.97755 0.78862 1.02126 1.22795 0.93185 0.98610 1.00345 1.19699 0.89160 0.90149 0.81548 1.86094 1.78375 1.43447 1.31617 1.21835 1.16698 1.10755 1.10240 0.91147 1.25809 0.99351 0.95737 0.96461 1.69740 1.41723 1.18077 1.26041 0.85449 0.78617 0.78385 0.78555 1.20450 1.20743 1.18944 1.22789 0.81479 0.96202 0.99749 1.75049 1.02127 1.15549 1.19033 0.85032 0.83597 0.85128 0.87696 0.90913 0.89507 0.88745 0.77173 0.91899 0.93911 0.93445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.42 11.62 127.77 1.49 1.91 16 2 N -0.11 -2.43 4.39 -206.58 -0.91 -3.34 16 3 N -0.06 -1.48 13.23 37.02 0.49 -0.99 16 4 N -0.26 -8.34 9.68 -52.37 -0.51 -8.85 16 5 C 0.12 4.50 7.95 137.15 1.09 5.59 16 6 C 0.61 26.71 7.86 86.83 0.68 27.39 16 7 O -0.56 -27.94 17.43 -3.84 -0.07 -28.01 16 8 N -0.59 -25.67 3.33 -815.02 -2.71 -28.38 16 9 C 0.11 3.99 6.15 86.86 0.53 4.53 16 10 C -0.11 -4.41 6.22 31.98 0.20 -4.21 16 11 C 0.23 11.45 0.86 -10.36 -0.01 11.44 16 12 O -0.59 -29.83 13.09 -148.98 -1.95 -31.78 16 13 C -0.56 -29.00 8.12 25.60 0.21 -28.79 16 14 H 0.07 3.55 7.77 -2.91 -0.02 3.53 16 15 C 0.03 1.42 5.26 84.65 0.45 1.87 16 16 N -0.92 -49.34 10.97 21.45 0.24 -49.11 16 17 Si 0.96 41.68 29.54 68.60 2.03 43.70 16 18 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 19 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 20 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 21 C 0.12 6.00 5.39 86.72 0.47 6.47 16 22 N -0.26 -8.05 12.17 -52.32 -0.64 -8.68 16 23 H 0.13 0.18 8.14 -2.39 -0.02 0.16 16 24 H 0.15 0.02 8.14 -2.38 -0.02 0.00 16 25 H 0.13 0.40 8.14 -2.39 -0.02 0.38 16 26 H 0.11 3.46 6.18 -2.39 -0.01 3.44 16 27 H 0.07 2.66 8.14 -2.38 -0.02 2.64 16 28 H 0.09 3.25 8.04 -2.38 -0.02 3.23 16 29 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 30 H 0.38 20.00 7.17 -74.06 -0.53 19.47 16 31 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 32 H 0.04 2.34 8.01 -2.39 -0.02 2.32 16 33 H 0.05 2.56 7.82 -2.39 -0.02 2.54 16 Total: -1.00 -69.54 288.60 1.71 -67.83 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: 0.63 Total: 21.42 kcal Atomic # 6 Polarization: 21.08 SS G_CDS: 5.10 Total: 26.19 kcal Atomic # 7 Polarization: -95.31 SS G_CDS: -4.04 Total: -99.35 kcal Atomic # 8 Polarization: -57.78 SS G_CDS: -2.02 Total: -59.79 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.70 kcal Total: -69.54 1.71 -67.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001469405625.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.875 kcal (2) G-P(sol) polarization free energy of solvation -69.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds