Wall clock time and date at job start Mon Mar 30 2020 00:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35795 * 124.89896 * 2 1 4 4 C 1.35931 * 107.06248 * 179.84024 * 3 2 1 5 5 N 1.40401 * 127.28973 * 180.12681 * 4 3 2 6 6 C 1.34778 * 120.00296 * 0.33696 * 5 4 3 7 7 O 1.21598 * 119.99709 * 0.02562 * 6 5 4 8 8 N 1.34768 * 120.00078 * 179.97438 * 6 5 4 9 9 C 1.46506 * 120.00040 * 179.97438 * 8 6 5 10 10 C 1.50701 * 109.47387 * 180.02562 * 9 8 6 11 11 H 1.08006 * 119.99856 * 359.97438 * 10 9 8 12 12 C 1.37873 * 119.99947 * 179.97438 * 10 9 8 13 13 N 1.31518 * 119.99662 * 179.97438 * 12 10 9 14 14 Si 1.86794 * 120.00179 * 359.97438 * 12 10 9 15 15 H 1.48506 * 109.47394 * 90.00017 * 14 12 10 16 16 H 1.48504 * 109.47271 * 209.99789 * 14 12 10 17 17 H 1.48497 * 109.46901 * 330.00029 * 14 12 10 18 18 C 1.41871 * 105.42076 * 0.40405 * 4 3 2 19 19 C 1.47502 * 126.47290 * 179.78217 * 18 4 3 20 20 N 1.34781 * 120.00041 * 179.97438 * 19 18 4 21 21 O 1.21590 * 120.00100 * 359.97438 * 19 18 4 22 22 N 1.28445 * 124.89404 * 180.30818 * 2 1 3 23 23 H 1.09001 * 109.47060 * 269.72524 * 1 2 3 24 24 H 1.09004 * 109.47073 * 29.72013 * 1 2 3 25 25 H 1.09000 * 109.47212 * 149.72095 * 1 2 3 26 26 H 1.08004 * 126.46796 * 359.97438 * 3 2 1 27 27 H 0.97005 * 120.00065 * 180.33145 * 5 4 3 28 28 H 0.97005 * 120.00286 * 0.02562 * 8 6 5 29 29 H 1.09005 * 109.46772 * 299.99804 * 9 8 6 30 30 H 1.09000 * 109.47210 * 59.99937 * 9 8 6 31 31 H 0.97004 * 119.99433 * 180.02562 * 13 12 10 32 32 H 0.97001 * 120.00064 * 359.97438 * 20 19 18 33 33 H 0.96995 * 119.99954 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2420 1.1137 0.0000 4 6 3.5359 0.6974 0.0036 5 7 4.6878 1.5002 0.0074 6 6 4.5734 2.8430 0.0147 7 8 3.4724 3.3593 0.0183 8 7 5.6790 3.6136 0.0189 9 6 5.5546 5.0733 0.0261 10 6 6.9276 5.6946 0.0290 11 1 7.8052 5.0650 0.0262 12 6 7.0634 7.0666 0.0353 13 7 8.2617 7.6087 0.0383 14 14 5.5457 8.1554 0.0395 15 1 5.1427 8.4377 1.4407 16 1 5.8506 9.4324 -0.6546 17 1 4.4371 7.4619 -0.6642 18 6 3.4762 -0.7200 -0.0039 19 6 4.6243 -1.6460 -0.0080 20 7 4.4161 -2.9777 -0.0147 21 8 5.7586 -1.2081 -0.0055 22 7 2.1998 -1.0535 -0.0057 23 1 -0.3633 -0.0049 1.0277 24 1 -0.3633 0.8925 -0.5095 25 1 -0.3634 -0.8875 -0.5182 26 1 1.8969 2.1372 -0.0004 27 1 5.5661 1.0883 0.0050 28 1 6.5573 3.2017 0.0163 29 1 5.0121 5.3961 -0.8625 30 1 5.0115 5.3873 0.9175 31 1 8.3572 8.5740 0.0431 32 1 3.5112 -3.3271 -0.0164 33 1 5.1711 -3.5866 -0.0178 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001477052867.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:16 Heat of formation + Delta-G solvation = 14.113652 kcal Electronic energy + Delta-G solvation = -19683.032584 eV Core-core repulsion = 16359.860231 eV Total energy + Delta-G solvation = -3323.172353 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.66315 -39.46940 -39.14651 -35.02106 -34.20918 -33.95570 -32.72171 -32.28570 -29.80491 -27.94189 -27.29328 -23.45292 -22.69942 -21.37576 -20.43517 -20.04895 -18.34337 -17.72805 -17.01601 -16.76363 -16.43253 -16.20581 -15.67104 -14.92300 -14.63279 -14.54191 -14.25572 -13.96689 -13.22482 -13.14782 -13.04255 -12.90588 -12.42968 -12.33030 -11.16340 -10.94157 -10.88926 -10.64575 -10.43354 -9.96217 -9.87205 -9.65197 -9.44927 -9.25424 -8.77362 -8.32336 -7.68056 -6.18793 -4.20997 1.42201 2.17355 2.29392 3.10181 3.26784 3.28796 3.35330 3.42866 3.48153 3.84264 4.24681 4.35186 4.78250 4.84074 4.87886 4.98627 5.09703 5.16369 5.30072 5.68759 5.94475 6.52978 6.68821 6.72541 6.98329 7.09726 7.13249 7.21805 7.34863 7.52879 7.82125 8.12137 8.28266 8.63297 8.80923 9.07639 9.40923 10.93221 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.027448 B = 0.004333 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.877735 B = 6460.216361 C = 7459.645870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.277 5.277 3 C -0.041 4.041 4 C 0.122 3.878 5 N -0.656 5.656 6 C 0.696 3.304 7 O -0.595 6.595 8 N -0.713 5.713 9 C 0.238 3.762 10 C -0.544 4.544 11 H 0.081 0.919 12 C 0.078 3.922 13 N -0.892 5.892 14 Si 0.878 3.122 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.260 1.260 18 C -0.056 4.056 19 C 0.616 3.384 20 N -0.843 5.843 21 O -0.541 6.541 22 N -0.253 5.253 23 H 0.085 0.915 24 H 0.098 0.902 25 H 0.094 0.906 26 H 0.209 0.791 27 H 0.418 0.582 28 H 0.397 0.603 29 H 0.026 0.974 30 H 0.021 0.979 31 H 0.268 0.732 32 H 0.407 0.593 33 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.892 -19.777 -0.200 24.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.068 5.068 3 C -0.185 4.185 4 C 0.015 3.985 5 N -0.305 5.305 6 C 0.396 3.604 7 O -0.474 6.474 8 N -0.364 5.364 9 C 0.116 3.884 10 C -0.582 4.582 11 H 0.099 0.901 12 C -0.126 4.126 13 N -0.529 5.529 14 Si 0.704 3.296 15 H -0.199 1.199 16 H -0.209 1.209 17 H -0.185 1.185 18 C -0.217 4.217 19 C 0.400 3.600 20 N -0.406 5.406 21 O -0.416 6.416 22 N -0.092 5.092 23 H 0.103 0.897 24 H 0.117 0.883 25 H 0.113 0.887 26 H 0.225 0.775 27 H 0.256 0.744 28 H 0.231 0.769 29 H 0.044 0.956 30 H 0.039 0.961 31 H 0.077 0.923 32 H 0.236 0.764 33 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -15.843 -19.445 -0.198 25.083 hybrid contribution 0.494 0.538 0.041 0.732 sum -15.349 -18.907 -0.157 24.354 Atomic orbital electron populations 1.22156 0.72788 1.05418 1.04462 1.45204 1.07631 1.03039 1.50962 1.23297 0.89179 0.93996 1.12064 1.17329 0.87356 0.88386 1.05419 1.42190 1.07628 1.04409 1.76248 1.16030 0.85714 0.80187 0.78468 1.90714 1.25283 1.72578 1.58833 1.45381 1.06292 1.08507 1.76261 1.19432 0.98238 0.73922 0.96836 1.21096 0.91201 0.92599 1.53265 0.90137 1.24776 0.96188 0.97723 0.93908 1.69886 1.21953 1.11660 1.49436 0.86807 0.83599 0.80181 0.79020 1.19859 1.20939 1.18450 1.21347 0.91284 0.91824 1.17262 1.16763 0.86395 0.81871 0.74993 1.43576 1.12769 1.06605 1.77665 1.90805 1.22615 1.77313 1.50842 1.73296 1.01722 1.14889 1.19326 0.89679 0.88349 0.88694 0.77478 0.74370 0.76915 0.95640 0.96087 0.92261 0.76424 0.76418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.55 11.32 59.85 0.68 1.23 16 2 N -0.28 -3.17 3.72 -67.77 -0.25 -3.42 16 3 C -0.04 -0.60 10.36 -16.63 -0.17 -0.77 16 4 C 0.12 2.00 7.00 -83.37 -0.58 1.42 16 5 N -0.66 -11.49 5.45 -14.05 -0.08 -11.56 16 6 C 0.70 14.23 8.53 -86.92 -0.74 13.48 16 7 O -0.59 -13.28 13.63 5.28 0.07 -13.21 16 8 N -0.71 -15.16 5.55 -66.41 -0.37 -15.52 16 9 C 0.24 5.91 4.50 -5.19 -0.02 5.89 16 10 C -0.54 -15.08 9.83 -34.44 -0.34 -15.42 16 11 H 0.08 2.34 7.84 -52.48 -0.41 1.92 16 12 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 13 N -0.89 -26.67 13.96 55.43 0.77 -25.90 16 14 Si 0.88 21.39 27.47 -169.99 -4.67 16.72 16 15 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 18 C -0.06 -0.80 7.13 -82.67 -0.59 -1.39 16 19 C 0.62 8.19 8.09 -12.48 -0.10 8.09 16 20 N -0.84 -7.19 8.87 30.45 0.27 -6.92 16 21 O -0.54 -8.74 16.19 5.29 0.09 -8.66 16 22 N -0.25 -3.10 11.65 33.46 0.39 -2.71 16 23 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 24 H 0.10 0.44 8.13 -51.93 -0.42 0.02 16 25 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.21 3.23 6.01 -52.48 -0.32 2.91 16 27 H 0.42 6.91 7.16 -40.82 -0.29 6.61 16 28 H 0.40 7.64 8.34 -40.82 -0.34 7.30 16 29 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 30 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 31 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.41 2.68 8.55 -40.82 -0.35 2.33 16 33 H 0.40 2.66 8.93 -40.82 -0.36 2.29 16 LS Contribution 293.80 15.07 4.43 4.43 Total: -1.00 -35.05 293.80 -4.59 -39.64 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -3.27 Total: 12.48 kcal Atomic # 6 Polarization: 16.61 SS G_CDS: -1.97 Total: 14.64 kcal Atomic # 7 Polarization: -66.78 SS G_CDS: 0.74 Total: -66.04 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: 0.16 Total: -21.87 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -35.05 -4.59 -39.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001477052867.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.758 kcal (2) G-P(sol) polarization free energy of solvation -35.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds