Wall clock time and date at job start Mon Mar 30 2020 00:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35795 * 124.89896 * 2 1 4 4 C 1.35931 * 107.06248 * 179.84024 * 3 2 1 5 5 N 1.40401 * 127.28973 * 180.12681 * 4 3 2 6 6 C 1.34778 * 120.00296 * 0.33696 * 5 4 3 7 7 O 1.21598 * 119.99709 * 0.02562 * 6 5 4 8 8 N 1.34768 * 120.00078 * 179.97438 * 6 5 4 9 9 C 1.46506 * 120.00040 * 179.97438 * 8 6 5 10 10 C 1.50701 * 109.47387 * 180.02562 * 9 8 6 11 11 H 1.08006 * 119.99856 * 359.97438 * 10 9 8 12 12 C 1.37873 * 119.99947 * 179.97438 * 10 9 8 13 13 N 1.31518 * 119.99662 * 179.97438 * 12 10 9 14 14 Si 1.86794 * 120.00179 * 359.97438 * 12 10 9 15 15 H 1.48506 * 109.47394 * 90.00017 * 14 12 10 16 16 H 1.48504 * 109.47271 * 209.99789 * 14 12 10 17 17 H 1.48497 * 109.46901 * 330.00029 * 14 12 10 18 18 C 1.41871 * 105.42076 * 0.40405 * 4 3 2 19 19 C 1.47502 * 126.47290 * 179.78217 * 18 4 3 20 20 N 1.34781 * 120.00041 * 179.97438 * 19 18 4 21 21 O 1.21590 * 120.00100 * 359.97438 * 19 18 4 22 22 N 1.28445 * 124.89404 * 180.30818 * 2 1 3 23 23 H 1.09001 * 109.47060 * 269.72524 * 1 2 3 24 24 H 1.09004 * 109.47073 * 29.72013 * 1 2 3 25 25 H 1.09000 * 109.47212 * 149.72095 * 1 2 3 26 26 H 1.08004 * 126.46796 * 359.97438 * 3 2 1 27 27 H 0.97005 * 120.00065 * 180.33145 * 5 4 3 28 28 H 0.97005 * 120.00286 * 0.02562 * 8 6 5 29 29 H 1.09005 * 109.46772 * 299.99804 * 9 8 6 30 30 H 1.09000 * 109.47210 * 59.99937 * 9 8 6 31 31 H 0.97004 * 119.99433 * 180.02562 * 13 12 10 32 32 H 0.97001 * 120.00064 * 359.97438 * 20 19 18 33 33 H 0.96995 * 119.99954 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2420 1.1137 0.0000 4 6 3.5359 0.6974 0.0036 5 7 4.6878 1.5002 0.0074 6 6 4.5734 2.8430 0.0147 7 8 3.4724 3.3593 0.0183 8 7 5.6790 3.6136 0.0189 9 6 5.5546 5.0733 0.0261 10 6 6.9276 5.6946 0.0290 11 1 7.8052 5.0650 0.0262 12 6 7.0634 7.0666 0.0353 13 7 8.2617 7.6087 0.0383 14 14 5.5457 8.1554 0.0395 15 1 5.1427 8.4377 1.4407 16 1 5.8506 9.4324 -0.6546 17 1 4.4371 7.4619 -0.6642 18 6 3.4762 -0.7200 -0.0039 19 6 4.6243 -1.6460 -0.0080 20 7 4.4161 -2.9777 -0.0147 21 8 5.7586 -1.2081 -0.0055 22 7 2.1998 -1.0535 -0.0057 23 1 -0.3633 -0.0049 1.0277 24 1 -0.3633 0.8925 -0.5095 25 1 -0.3634 -0.8875 -0.5182 26 1 1.8969 2.1372 -0.0004 27 1 5.5661 1.0883 0.0050 28 1 6.5573 3.2017 0.0163 29 1 5.0121 5.3961 -0.8625 30 1 5.0115 5.3873 0.9175 31 1 8.3572 8.5740 0.0431 32 1 3.5112 -3.3271 -0.0164 33 1 5.1711 -3.5866 -0.0178 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001477052867.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:16 Heat of formation + Delta-G solvation = -16.852219 kcal Electronic energy + Delta-G solvation = -19684.375365 eV Core-core repulsion = 16359.860231 eV Total energy + Delta-G solvation = -3324.515134 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.70959 -41.03216 -40.17740 -36.56942 -35.86122 -34.88574 -34.45576 -33.54691 -31.11572 -29.56954 -28.33856 -24.83295 -23.99945 -22.94265 -21.65151 -21.43576 -19.62431 -19.18356 -18.18716 -18.04043 -17.66401 -17.41472 -16.92897 -16.49973 -16.34877 -15.66483 -15.59983 -15.14582 -15.00364 -14.46371 -14.36305 -14.19044 -13.61291 -13.51725 -13.03286 -12.70315 -12.16374 -12.06935 -11.88978 -11.65532 -11.54045 -11.25418 -10.90011 -10.75183 -10.22921 -10.06860 -8.98919 -8.37355 -6.45275 0.40461 0.97933 1.31932 1.37382 1.39584 1.51820 1.81781 2.05643 2.31477 2.41775 2.52932 2.98114 3.22397 3.46231 3.87377 4.11537 4.40477 4.44939 4.55636 4.71966 4.74045 4.81428 5.06318 5.25063 5.45928 5.51941 5.79771 5.84975 5.92072 6.21903 6.31190 6.56523 6.79759 7.03042 7.19078 7.25362 7.48205 8.77667 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.027448 B = 0.004333 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.877735 B = 6460.216361 C = 7459.645870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.263 5.263 3 C -0.043 4.043 4 C 0.083 3.917 5 N -0.646 5.646 6 C 0.698 3.302 7 O -0.614 6.614 8 N -0.716 5.716 9 C 0.252 3.748 10 C -0.550 4.550 11 H 0.055 0.945 12 C 0.025 3.975 13 N -0.933 5.933 14 Si 0.943 3.057 15 H -0.264 1.264 16 H -0.274 1.274 17 H -0.255 1.255 18 C -0.067 4.067 19 C 0.611 3.389 20 N -0.816 5.816 21 O -0.577 6.577 22 N -0.232 5.232 23 H 0.105 0.895 24 H 0.114 0.886 25 H 0.118 0.882 26 H 0.200 0.800 27 H 0.422 0.578 28 H 0.405 0.595 29 H 0.019 0.981 30 H 0.018 0.982 31 H 0.273 0.727 32 H 0.419 0.581 33 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.422 -21.059 -0.180 27.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.055 5.055 3 C -0.188 4.188 4 C -0.024 4.024 5 N -0.295 5.295 6 C 0.398 3.602 7 O -0.496 6.496 8 N -0.368 5.368 9 C 0.128 3.872 10 C -0.588 4.588 11 H 0.073 0.927 12 C -0.175 4.175 13 N -0.572 5.572 14 Si 0.766 3.234 15 H -0.189 1.189 16 H -0.199 1.199 17 H -0.179 1.179 18 C -0.227 4.227 19 C 0.394 3.606 20 N -0.380 5.380 21 O -0.456 6.456 22 N -0.072 5.072 23 H 0.123 0.877 24 H 0.133 0.867 25 H 0.136 0.864 26 H 0.217 0.783 27 H 0.260 0.740 28 H 0.240 0.760 29 H 0.037 0.963 30 H 0.036 0.964 31 H 0.082 0.918 32 H 0.250 0.750 33 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -18.419 -20.833 -0.177 27.808 hybrid contribution 1.197 0.773 0.035 1.425 sum -17.222 -20.060 -0.142 26.439 Atomic orbital electron populations 1.22690 0.69423 1.07475 1.06431 1.45721 1.09289 1.01750 1.48768 1.23174 0.89264 0.94616 1.11761 1.17709 0.87418 0.89448 1.07797 1.41941 1.08526 1.03329 1.75665 1.16011 0.84968 0.81014 0.78234 1.90695 1.25815 1.73311 1.59746 1.45137 1.07200 1.07432 1.77037 1.19055 0.96144 0.75783 0.96181 1.21287 0.91810 0.92809 1.52907 0.92681 1.25637 0.99216 0.99239 0.93420 1.70000 1.24198 1.12359 1.50639 0.85779 0.79720 0.78373 0.79543 1.18862 1.19945 1.17873 1.21456 0.92226 0.91153 1.17876 1.16799 0.85617 0.83061 0.75089 1.43356 1.14097 1.05107 1.75453 1.90786 1.23750 1.78129 1.52905 1.73308 1.00959 1.14727 1.18233 0.87707 0.86726 0.86360 0.78344 0.73965 0.76006 0.96332 0.96449 0.91827 0.74965 0.74973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.66 11.32 127.77 1.45 2.11 16 2 N -0.26 -5.40 3.72 -368.32 -1.37 -6.77 16 3 C -0.04 -1.22 10.36 83.54 0.87 -0.35 16 4 C 0.08 2.66 7.00 38.13 0.27 2.93 16 5 N -0.65 -22.76 5.45 -316.61 -1.73 -24.49 16 6 C 0.70 28.63 8.53 179.06 1.53 30.16 16 7 O -0.61 -27.37 13.63 -4.02 -0.05 -27.42 16 8 N -0.72 -30.75 5.55 -482.28 -2.68 -33.43 16 9 C 0.25 12.55 4.50 85.63 0.38 12.93 16 10 C -0.55 -31.03 9.83 25.60 0.25 -30.78 16 11 H 0.06 3.30 7.84 -2.91 -0.02 3.28 16 12 C 0.03 1.43 5.47 84.65 0.46 1.89 16 13 N -0.93 -56.50 13.96 21.45 0.30 -56.20 16 14 Si 0.94 43.88 27.47 68.60 1.88 45.77 16 15 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 16 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 17 H -0.25 -11.56 6.54 99.48 0.65 -10.91 16 18 C -0.07 -1.83 7.13 42.47 0.30 -1.53 16 19 C 0.61 15.59 8.09 86.69 0.70 16.29 16 20 N -0.82 -12.24 8.87 -175.83 -1.56 -13.80 16 21 O -0.58 -18.59 16.19 -4.00 -0.06 -18.66 16 22 N -0.23 -5.14 11.65 -48.04 -0.56 -5.70 16 23 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 24 H 0.11 0.66 8.13 -2.38 -0.02 0.64 16 25 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.20 6.06 6.01 -2.91 -0.02 6.05 16 27 H 0.42 14.17 7.16 -92.70 -0.66 13.50 16 28 H 0.40 15.95 8.34 -92.70 -0.77 15.18 16 29 H 0.02 0.96 7.20 -2.38 -0.02 0.94 16 30 H 0.02 0.89 7.57 -2.39 -0.02 0.87 16 31 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 32 H 0.42 4.37 8.55 -92.71 -0.79 3.58 16 33 H 0.42 4.60 8.93 -92.71 -0.83 3.77 16 Total: -1.00 -75.73 293.80 -1.52 -77.24 By element: Atomic # 1 Polarization: 31.70 SS G_CDS: -1.90 Total: 29.81 kcal Atomic # 6 Polarization: 27.43 SS G_CDS: 6.21 Total: 33.64 kcal Atomic # 7 Polarization: -132.79 SS G_CDS: -7.59 Total: -140.38 kcal Atomic # 8 Polarization: -45.96 SS G_CDS: -0.12 Total: -46.08 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.88 Total: 45.77 kcal Total: -75.73 -1.52 -77.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001477052867.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.392 kcal (2) G-P(sol) polarization free energy of solvation -75.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds