Wall clock time and date at job start Mon Mar 30 2020 00:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.47253 * 2 1 4 4 C 1.50697 * 109.47289 * 240.00354 * 2 1 3 5 5 H 1.07995 * 120.00137 * 239.99902 * 4 2 1 6 6 C 1.37875 * 120.00150 * 59.99966 * 4 2 1 7 7 N 1.31515 * 120.00101 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00312 * 180.02562 * 6 4 2 9 9 H 1.48511 * 109.46980 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47594 * 119.99524 * 8 6 4 11 11 H 1.48496 * 109.47465 * 239.99911 * 8 6 4 12 12 C 1.50694 * 109.47231 * 120.00146 * 2 1 3 13 13 O 1.20824 * 120.00310 * 120.00332 * 12 2 1 14 14 O 1.34234 * 119.99993 * 300.00100 * 12 2 1 15 15 C 1.45199 * 116.99757 * 179.97438 * 14 12 2 16 16 H 1.08990 * 109.47688 * 329.99902 * 15 14 12 17 17 C 1.53008 * 109.47065 * 90.00314 * 15 14 12 18 18 C 1.50699 * 109.46960 * 209.99744 * 15 14 12 19 19 C 1.38154 * 119.60136 * 5.00606 * 18 15 14 20 20 C 1.38705 * 119.22421 * 180.25202 * 19 18 15 21 21 C 1.38555 * 118.44903 * 359.45976 * 20 19 18 22 22 C 1.38524 * 119.13680 * 0.53765 * 21 20 19 23 23 F 1.35099 * 119.64443 * 179.70565 * 22 21 20 24 24 N 1.31905 * 119.60296 * 184.97983 * 18 15 14 25 25 H 1.08996 * 109.46926 * 59.99998 * 1 2 3 26 26 H 1.08997 * 109.46898 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47012 * 300.00204 * 1 2 3 28 28 H 0.96996 * 120.00277 * 180.02562 * 7 6 4 29 29 H 1.08995 * 109.46807 * 59.99532 * 17 15 14 30 30 H 1.09005 * 109.46919 * 179.97438 * 17 15 14 31 31 H 1.08999 * 109.46764 * 299.99818 * 17 15 14 32 32 H 1.08002 * 120.38499 * 359.97156 * 19 18 15 33 33 H 1.07999 * 120.77542 * 179.71601 * 20 19 18 34 34 H 1.07998 * 120.43089 * 180.24145 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2392 -2.4827 7 7 0.9436 0.8303 -2.6034 8 14 2.3214 -1.1201 -4.0080 9 1 3.1466 -2.2868 -3.6039 10 1 1.1662 -1.5865 -4.8162 11 1 3.1466 -0.1871 -4.8165 12 6 2.0323 -0.7104 1.2304 13 8 2.7270 -1.6927 1.1196 14 8 1.7081 -0.2518 2.4496 15 6 2.2268 -0.9864 3.5896 16 1 2.3402 -2.0373 3.3236 17 6 3.5871 -0.4120 3.9903 18 6 1.2685 -0.8615 4.7459 19 6 0.0617 -0.2138 4.5652 20 6 -0.8122 -0.0987 5.6362 21 6 -0.4430 -0.6518 6.8517 22 6 0.7833 -1.2871 6.9589 23 9 1.1562 -1.8248 8.1408 24 7 1.5918 -1.3724 5.9182 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.7090 1.1616 -3.4843 29 1 3.4736 0.6389 4.2563 30 1 3.9763 -0.9632 4.8464 31 1 4.2803 -0.5023 3.1540 32 1 -0.1963 0.2021 3.6024 33 1 -1.7601 0.4066 5.5241 34 1 -1.1006 -0.5843 7.7057 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001515621410.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:47 Heat of formation + Delta-G solvation = -100.143486 kcal Electronic energy + Delta-G solvation = -19871.281339 eV Core-core repulsion = 16490.941712 eV Total energy + Delta-G solvation = -3380.339627 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.15030 -40.56514 -39.51107 -36.14175 -33.96338 -33.32587 -32.12121 -30.59962 -29.64856 -25.26941 -25.03803 -23.68551 -23.22443 -21.44618 -19.81156 -18.09642 -17.19391 -16.68136 -16.29329 -16.24105 -16.06637 -15.82997 -15.16102 -14.66681 -14.16787 -13.77897 -13.60624 -13.36703 -12.95139 -12.82834 -12.43647 -12.22216 -11.85243 -11.66648 -11.19784 -11.09624 -10.82955 -10.75093 -10.49903 -10.34331 -10.11500 -10.08576 -9.74953 -9.23610 -9.09220 -8.99864 -8.49998 -6.15394 -4.20791 0.73023 0.93795 2.88059 3.21319 3.26685 3.34389 3.39257 3.42024 3.68850 4.25586 4.39120 4.51145 4.72243 4.93046 5.08047 5.18315 5.23159 5.35907 5.61444 5.62773 5.73170 5.88504 5.98935 6.18524 6.23677 6.44820 6.59144 6.77518 6.80252 7.11615 7.36790 7.47124 7.68497 7.89221 8.08183 8.75079 8.88700 9.45344 10.92029 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.040595 B = 0.004123 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.570311 B = 6789.355075 C = 7218.189366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.059 3.941 3 H 0.066 0.934 4 C -0.513 4.513 5 H 0.077 0.923 6 C 0.062 3.938 7 N -0.892 5.892 8 Si 0.904 3.096 9 H -0.270 1.270 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.467 3.533 13 O -0.511 6.511 14 O -0.359 6.359 15 C 0.131 3.869 16 H 0.104 0.896 17 C -0.155 4.155 18 C 0.171 3.829 19 C -0.158 4.158 20 C -0.047 4.047 21 C -0.199 4.199 22 C 0.306 3.694 23 F -0.115 7.115 24 N -0.508 5.508 25 H 0.097 0.903 26 H 0.032 0.968 27 H 0.023 0.977 28 H 0.263 0.737 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.159 0.841 33 H 0.149 0.851 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.006 0.572 15.820 16.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.040 3.960 3 H 0.084 0.916 4 C -0.551 4.551 5 H 0.095 0.905 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.731 3.269 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.312 3.688 13 O -0.397 6.397 14 O -0.278 6.278 15 C 0.074 3.926 16 H 0.122 0.878 17 C -0.213 4.213 18 C 0.034 3.966 19 C -0.178 4.178 20 C -0.072 4.072 21 C -0.220 4.220 22 C 0.152 3.848 23 F -0.094 7.094 24 N -0.224 5.224 25 H 0.115 0.885 26 H 0.051 0.949 27 H 0.042 0.958 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.176 0.824 33 H 0.166 0.834 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.055 -0.071 15.815 16.108 hybrid contribution -0.344 -0.247 -0.515 0.666 sum -3.399 -0.318 15.301 15.677 Atomic orbital electron populations 1.21746 0.95575 1.00096 1.01747 1.18791 0.94859 0.97047 0.85322 0.91650 1.21172 1.31933 1.13279 0.88705 0.90525 1.24927 0.94865 0.94992 0.99148 1.69878 1.36536 1.22794 1.23827 0.86333 0.78680 0.79749 0.82134 1.19478 1.20877 1.20872 1.25445 0.76589 0.83180 0.83623 1.90511 1.36171 1.26659 1.86318 1.86632 1.70583 1.55387 1.15152 1.20935 0.91143 0.98620 0.81856 0.87813 1.22069 0.94745 1.01708 1.02758 1.20591 0.93353 0.92222 0.90445 1.22189 0.94109 0.99933 1.01538 1.21572 0.99548 0.94997 0.91122 1.21829 0.96839 1.02647 1.00698 1.17975 0.90558 0.94622 0.81645 1.91621 1.92008 1.83794 1.41953 1.66448 1.35359 1.21258 0.99356 0.88491 0.94918 0.95828 0.92710 0.91835 0.90250 0.91046 0.82364 0.83355 0.83537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 8.90 37.16 0.33 -2.65 16 2 C 0.06 1.42 2.74 -92.93 -0.25 1.17 16 3 H 0.07 1.63 8.14 -51.92 -0.42 1.21 16 4 C -0.51 -13.96 8.37 -34.44 -0.29 -14.25 16 5 H 0.08 2.19 6.76 -52.49 -0.35 1.83 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -24.11 11.32 55.43 0.63 -23.48 16 8 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 9 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 C 0.47 10.40 7.22 36.00 0.26 10.66 16 13 O -0.51 -12.49 14.68 -18.75 -0.28 -12.76 16 14 O -0.36 -6.63 8.24 -39.27 -0.32 -6.96 16 15 C 0.13 2.14 3.05 -27.88 -0.08 2.05 16 16 H 0.10 1.83 7.16 -51.93 -0.37 1.46 16 17 C -0.16 -2.28 9.41 37.16 0.35 -1.93 16 18 C 0.17 2.50 6.18 -82.59 -0.51 1.99 16 19 C -0.16 -1.99 9.41 -39.44 -0.37 -2.36 16 20 C -0.05 -0.45 10.17 -39.29 -0.40 -0.85 16 21 C -0.20 -1.95 10.09 -39.36 -0.40 -2.35 16 22 C 0.31 3.89 8.41 -17.35 -0.15 3.74 16 23 F -0.11 -1.44 17.29 2.25 0.04 -1.40 16 24 N -0.51 -7.47 9.89 -9.81 -0.10 -7.57 16 25 H 0.10 2.36 6.07 -51.93 -0.32 2.04 16 26 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.02 0.44 8.11 -51.93 -0.42 0.02 16 28 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.08 1.08 7.95 -51.93 -0.41 0.67 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.16 2.00 6.99 -52.49 -0.37 1.63 16 33 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 301.56 15.07 4.54 4.54 Total: -1.00 -29.13 301.56 -6.03 -35.15 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -3.91 Total: -0.34 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: -1.61 Total: -3.20 kcal Atomic # 7 Polarization: -31.58 SS G_CDS: 0.53 Total: -31.05 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -0.60 Total: -19.72 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.13 -6.03 -35.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001515621410.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.990 kcal (2) G-P(sol) polarization free energy of solvation -29.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds