Wall clock time and date at job start Mon Mar 30 2020 00:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.47253 * 2 1 4 4 C 1.50697 * 109.47289 * 240.00354 * 2 1 3 5 5 H 1.07995 * 120.00137 * 239.99902 * 4 2 1 6 6 C 1.37875 * 120.00150 * 59.99966 * 4 2 1 7 7 N 1.31515 * 120.00101 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00312 * 180.02562 * 6 4 2 9 9 H 1.48511 * 109.46980 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47594 * 119.99524 * 8 6 4 11 11 H 1.48496 * 109.47465 * 239.99911 * 8 6 4 12 12 C 1.50694 * 109.47231 * 120.00146 * 2 1 3 13 13 O 1.20824 * 120.00310 * 120.00332 * 12 2 1 14 14 O 1.34234 * 119.99993 * 300.00100 * 12 2 1 15 15 C 1.45199 * 116.99757 * 179.97438 * 14 12 2 16 16 H 1.08990 * 109.47688 * 329.99902 * 15 14 12 17 17 C 1.53008 * 109.47065 * 90.00314 * 15 14 12 18 18 C 1.50699 * 109.46960 * 209.99744 * 15 14 12 19 19 C 1.38154 * 119.60136 * 5.00606 * 18 15 14 20 20 C 1.38705 * 119.22421 * 180.25202 * 19 18 15 21 21 C 1.38555 * 118.44903 * 359.45976 * 20 19 18 22 22 C 1.38524 * 119.13680 * 0.53765 * 21 20 19 23 23 F 1.35099 * 119.64443 * 179.70565 * 22 21 20 24 24 N 1.31905 * 119.60296 * 184.97983 * 18 15 14 25 25 H 1.08996 * 109.46926 * 59.99998 * 1 2 3 26 26 H 1.08997 * 109.46898 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47012 * 300.00204 * 1 2 3 28 28 H 0.96996 * 120.00277 * 180.02562 * 7 6 4 29 29 H 1.08995 * 109.46807 * 59.99532 * 17 15 14 30 30 H 1.09005 * 109.46919 * 179.97438 * 17 15 14 31 31 H 1.08999 * 109.46764 * 299.99818 * 17 15 14 32 32 H 1.08002 * 120.38499 * 359.97156 * 19 18 15 33 33 H 1.07999 * 120.77542 * 179.71601 * 20 19 18 34 34 H 1.07998 * 120.43089 * 180.24145 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2392 -2.4827 7 7 0.9436 0.8303 -2.6034 8 14 2.3214 -1.1201 -4.0080 9 1 3.1466 -2.2868 -3.6039 10 1 1.1662 -1.5865 -4.8162 11 1 3.1466 -0.1871 -4.8165 12 6 2.0323 -0.7104 1.2304 13 8 2.7270 -1.6927 1.1196 14 8 1.7081 -0.2518 2.4496 15 6 2.2268 -0.9864 3.5896 16 1 2.3402 -2.0373 3.3236 17 6 3.5871 -0.4120 3.9903 18 6 1.2685 -0.8615 4.7459 19 6 0.0617 -0.2138 4.5652 20 6 -0.8122 -0.0987 5.6362 21 6 -0.4430 -0.6518 6.8517 22 6 0.7833 -1.2871 6.9589 23 9 1.1562 -1.8248 8.1408 24 7 1.5918 -1.3724 5.9182 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.7090 1.1616 -3.4843 29 1 3.4736 0.6389 4.2563 30 1 3.9763 -0.9632 4.8464 31 1 4.2803 -0.5023 3.1540 32 1 -0.1963 0.2021 3.6024 33 1 -1.7601 0.4066 5.5241 34 1 -1.1006 -0.5843 7.7057 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001515621410.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:47 Heat of formation + Delta-G solvation = -116.108813 kcal Electronic energy + Delta-G solvation = -19871.973647 eV Core-core repulsion = 16490.941712 eV Total energy + Delta-G solvation = -3381.031935 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.08394 -41.82606 -40.91252 -37.75990 -35.92123 -34.40977 -33.27919 -32.44711 -30.74046 -27.26527 -26.26941 -25.01427 -24.40107 -22.76644 -21.47274 -19.17250 -18.52624 -18.37816 -17.84021 -17.40437 -17.17986 -17.08225 -16.79102 -16.27083 -15.42415 -15.04114 -14.96857 -14.66109 -14.30374 -14.03514 -13.75139 -13.59336 -13.39806 -13.02968 -12.88303 -12.75446 -12.56633 -12.47210 -12.26976 -12.06539 -11.89593 -11.09717 -11.07280 -11.02364 -10.75369 -10.51989 -9.98039 -8.19369 -6.31725 -0.19679 0.05827 1.39594 1.42239 1.44262 1.50890 1.60877 2.41697 2.44967 2.59009 3.11214 3.21642 3.62905 3.78739 3.95469 3.98943 4.06519 4.19363 4.37039 4.64551 4.67771 4.73535 4.77983 4.92330 4.92443 5.02394 5.06546 5.07005 5.40577 5.49251 5.56481 5.71246 5.91654 6.12936 6.49094 6.74735 7.01210 7.37207 8.87001 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.040595 B = 0.004123 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.570311 B = 6789.355075 C = 7218.189366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.052 3.948 3 H 0.055 0.945 4 C -0.539 4.539 5 H 0.054 0.946 6 C 0.026 3.974 7 N -0.907 5.907 8 Si 0.959 3.041 9 H -0.278 1.278 10 H -0.273 1.273 11 H -0.274 1.274 12 C 0.477 3.523 13 O -0.539 6.539 14 O -0.346 6.346 15 C 0.129 3.871 16 H 0.084 0.916 17 C -0.149 4.149 18 C 0.149 3.851 19 C -0.166 4.166 20 C -0.031 4.031 21 C -0.177 4.177 22 C 0.287 3.713 23 F -0.118 7.118 24 N -0.536 5.536 25 H 0.077 0.923 26 H 0.028 0.972 27 H 0.056 0.944 28 H 0.268 0.732 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.057 0.943 32 H 0.156 0.844 33 H 0.191 0.809 34 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.688 1.265 16.995 17.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.033 3.967 3 H 0.073 0.927 4 C -0.577 4.577 5 H 0.073 0.927 6 C -0.175 4.175 7 N -0.545 5.545 8 Si 0.785 3.215 9 H -0.203 1.203 10 H -0.198 1.198 11 H -0.200 1.200 12 C 0.322 3.678 13 O -0.428 6.428 14 O -0.263 6.263 15 C 0.073 3.927 16 H 0.102 0.898 17 C -0.206 4.206 18 C 0.013 3.987 19 C -0.186 4.186 20 C -0.057 4.057 21 C -0.198 4.198 22 C 0.133 3.867 23 F -0.098 7.098 24 N -0.252 5.252 25 H 0.096 0.904 26 H 0.047 0.953 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.108 0.892 31 H 0.076 0.924 32 H 0.174 0.826 33 H 0.209 0.791 34 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -4.749 0.643 17.007 17.669 hybrid contribution 0.145 -0.443 -0.745 0.879 sum -4.604 0.200 16.262 16.902 Atomic orbital electron populations 1.21578 0.93954 0.99998 1.02375 1.18709 0.96192 0.96197 0.85580 0.92702 1.21285 1.32569 1.13238 0.90565 0.92732 1.25563 0.94912 0.95625 1.01358 1.69947 1.36626 1.23263 1.24665 0.85481 0.78380 0.78545 0.79115 1.20319 1.19811 1.19951 1.24949 0.75972 0.82443 0.84450 1.90496 1.37399 1.27866 1.87005 1.86557 1.70094 1.55015 1.14605 1.21044 0.92718 0.97290 0.81685 0.89813 1.22019 0.93674 1.02455 1.02483 1.20233 0.94024 0.94593 0.89900 1.22289 0.93883 0.99787 1.02597 1.22023 1.00190 0.93735 0.89713 1.22246 0.95582 0.99989 1.01944 1.18331 0.91623 0.95609 0.81153 1.91613 1.92207 1.84004 1.41927 1.66238 1.36899 1.22148 0.99918 0.90430 0.95278 0.92487 0.92261 0.90746 0.89228 0.92440 0.82622 0.79144 0.79701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.35 8.90 71.98 0.64 -4.70 16 2 C 0.05 2.57 2.74 -12.29 -0.03 2.53 16 3 H 0.06 2.79 8.14 -2.38 -0.02 2.78 16 4 C -0.54 -29.93 8.37 25.60 0.21 -29.72 16 5 H 0.05 3.22 6.76 -2.91 -0.02 3.20 16 6 C 0.03 1.37 5.30 84.65 0.45 1.82 16 7 N -0.91 -48.88 11.32 21.45 0.24 -48.64 16 8 Si 0.96 43.19 29.54 68.60 2.03 45.22 16 9 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 10 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 11 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 12 C 0.48 21.62 7.22 71.23 0.51 22.14 16 13 O -0.54 -27.28 14.68 21.97 0.32 -26.96 16 14 O -0.35 -12.80 8.24 -51.46 -0.42 -13.22 16 15 C 0.13 4.26 3.05 29.85 0.09 4.35 16 16 H 0.08 3.09 7.16 -2.39 -0.02 3.07 16 17 C -0.15 -4.43 9.41 71.98 0.68 -3.75 16 18 C 0.15 4.25 6.18 42.53 0.26 4.51 16 19 C -0.17 -3.81 9.41 22.36 0.21 -3.60 16 20 C -0.03 -0.48 10.17 22.46 0.23 -0.25 16 21 C -0.18 -2.76 10.09 22.41 0.23 -2.54 16 22 C 0.29 6.73 8.41 84.73 0.71 7.44 16 23 F -0.12 -2.78 17.29 44.97 0.78 -2.01 16 24 N -0.54 -15.36 9.89 -184.94 -1.83 -17.19 16 25 H 0.08 3.75 6.07 -2.39 -0.01 3.73 16 26 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.06 2.07 8.11 -2.39 -0.02 2.05 16 28 H 0.27 13.60 8.31 -92.71 -0.77 12.83 16 29 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.09 2.46 7.95 -2.38 -0.02 2.44 16 31 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.16 3.62 6.99 -2.91 -0.02 3.60 16 33 H 0.19 1.30 8.06 -2.91 -0.02 1.27 16 34 H 0.19 1.47 8.06 -2.91 -0.02 1.45 16 Total: -1.00 -63.84 301.56 6.42 -57.42 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: 1.12 Total: 7.13 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: 4.19 Total: -1.76 kcal Atomic # 7 Polarization: -64.24 SS G_CDS: -1.59 Total: -65.82 kcal Atomic # 8 Polarization: -40.07 SS G_CDS: -0.10 Total: -40.18 kcal Atomic # 9 Polarization: -2.78 SS G_CDS: 0.78 Total: -2.01 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -63.84 6.42 -57.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001515621410.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.693 kcal (2) G-P(sol) polarization free energy of solvation -63.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds