Wall clock time and date at job start Mon Mar 30 2020 00:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47292 * 2 1 4 4 O 1.45193 * 109.47377 * 120.00568 * 2 1 3 5 5 C 1.34231 * 117.00126 * 269.99754 * 4 2 1 6 6 O 1.20833 * 119.99644 * 0.02562 * 5 4 2 7 7 C 1.50696 * 120.00640 * 179.71955 * 5 4 2 8 8 H 1.09000 * 109.47190 * 300.28291 * 7 5 4 9 9 C 1.53010 * 109.46632 * 60.27594 * 7 5 4 10 10 C 1.50703 * 109.47478 * 180.27539 * 7 5 4 11 11 H 1.07993 * 119.99431 * 0.02562 * 10 7 5 12 12 C 1.37879 * 119.99823 * 180.02562 * 10 7 5 13 13 N 1.31510 * 120.00072 * 0.02562 * 12 10 7 14 14 Si 1.86799 * 119.99811 * 180.02562 * 12 10 7 15 15 H 1.48496 * 109.46855 * 89.99841 * 14 12 10 16 16 H 1.48496 * 109.47272 * 210.00363 * 14 12 10 17 17 H 1.48499 * 109.47078 * 330.00391 * 14 12 10 18 18 C 1.50706 * 109.47003 * 240.00316 * 2 1 3 19 19 C 1.38144 * 119.60583 * 124.99980 * 18 2 1 20 20 C 1.38705 * 119.22648 * 179.97438 * 19 18 2 21 21 C 1.38540 * 118.45060 * 0.02562 * 20 19 18 22 22 C 1.38528 * 119.14208 * 359.97438 * 21 20 19 23 23 F 1.35095 * 119.65278 * 180.02562 * 22 21 20 24 24 N 1.31909 * 119.60116 * 304.72641 * 18 2 1 25 25 H 1.09006 * 109.47031 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46742 * 299.99523 * 1 2 3 27 27 H 1.08999 * 109.47253 * 59.99790 * 1 2 3 28 28 H 1.09000 * 109.46764 * 60.00436 * 9 7 5 29 29 H 1.09005 * 109.46732 * 180.02562 * 9 7 5 30 30 H 1.08990 * 109.47121 * 300.00016 * 9 7 5 31 31 H 0.97001 * 120.00133 * 180.02562 * 13 12 10 32 32 H 1.08004 * 120.38325 * 0.02562 * 19 18 2 33 33 H 1.07994 * 120.77261 * 180.02562 * 20 19 18 34 34 H 1.08003 * 120.42977 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0141 -0.6846 1.1854 5 6 2.2173 0.0638 2.2810 6 8 1.9975 1.2516 2.2506 7 6 2.7129 -0.5783 3.5510 8 1 2.0023 -1.3387 3.8750 9 6 4.0744 -1.2283 3.2960 10 6 2.8503 0.4708 4.6241 11 1 2.6029 1.4996 4.4081 12 6 3.2917 0.1172 5.8815 13 7 3.5934 -1.1356 6.1443 14 14 3.4612 1.4175 7.2119 15 1 2.1845 1.5273 7.9622 16 1 4.5517 1.0332 8.1437 17 1 3.7821 2.7259 6.5871 18 6 2.0323 -0.7104 -1.2306 19 6 2.9093 -0.0652 -2.0808 20 6 3.3671 -0.7266 -3.2109 21 6 2.9233 -2.0179 -3.4450 22 6 2.0435 -2.6018 -2.5483 23 9 1.6046 -3.8608 -2.7663 24 7 1.6335 -1.9428 -1.4799 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 4.7850 -0.4680 2.9720 29 1 4.4328 -1.6932 4.2145 30 1 3.9751 -1.9871 2.5200 31 1 3.9036 -1.3845 7.0290 32 1 3.2354 0.9422 -1.8677 33 1 4.0534 -0.2460 -3.8923 34 1 3.2596 -2.5626 -4.3148 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001515621413.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:50 Heat of formation + Delta-G solvation = -117.488309 kcal Electronic energy + Delta-G solvation = -19881.558375 eV Core-core repulsion = 16500.466621 eV Total energy + Delta-G solvation = -3381.091755 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.06207 -41.77155 -40.90485 -37.69022 -35.92946 -34.30126 -33.42849 -32.51946 -30.67188 -27.30161 -26.21315 -25.03874 -24.48980 -22.77242 -21.40845 -19.06948 -18.75838 -18.23378 -17.96158 -17.24655 -17.15749 -17.10587 -16.83850 -16.26955 -15.33384 -15.05405 -14.84993 -14.43098 -14.39037 -14.17584 -13.73547 -13.60293 -13.38638 -13.07500 -12.96320 -12.77872 -12.63733 -12.35870 -12.26993 -12.04622 -11.76385 -11.16554 -11.12505 -11.01921 -10.67204 -10.53628 -10.05591 -8.19753 -6.33719 -0.26262 0.07997 1.40860 1.43563 1.44489 1.55351 1.82773 2.40431 2.43818 2.60003 3.10387 3.24053 3.55897 3.81870 3.96671 4.00151 4.10067 4.20860 4.35620 4.62694 4.64228 4.67844 4.73648 4.87749 4.91435 4.96124 5.01269 5.10377 5.36925 5.46228 5.56084 5.67865 5.86426 6.08184 6.58053 6.73300 7.02817 7.35355 8.86983 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.033029 B = 0.004274 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.528281 B = 6550.250322 C = 6781.803961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.123 3.877 3 H 0.106 0.894 4 O -0.355 6.355 5 C 0.475 3.525 6 O -0.534 6.534 7 C 0.049 3.951 8 H 0.045 0.955 9 C -0.119 4.119 10 C -0.536 4.536 11 H 0.061 0.939 12 C 0.021 3.979 13 N -0.911 5.911 14 Si 0.967 3.033 15 H -0.274 1.274 16 H -0.275 1.275 17 H -0.272 1.272 18 C 0.142 3.858 19 C -0.162 4.162 20 C -0.032 4.032 21 C -0.174 4.174 22 C 0.278 3.722 23 F -0.123 7.123 24 N -0.529 5.529 25 H 0.064 0.936 26 H 0.055 0.945 27 H 0.097 0.903 28 H 0.033 0.967 29 H 0.078 0.922 30 H 0.039 0.961 31 H 0.268 0.732 32 H 0.169 0.831 33 H 0.197 0.803 34 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.354 0.503 -20.532 20.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.068 3.932 3 H 0.123 0.877 4 O -0.272 6.272 5 C 0.321 3.679 6 O -0.423 6.423 7 C 0.030 3.970 8 H 0.063 0.937 9 C -0.176 4.176 10 C -0.574 4.574 11 H 0.079 0.921 12 C -0.179 4.179 13 N -0.550 5.550 14 Si 0.791 3.209 15 H -0.199 1.199 16 H -0.200 1.200 17 H -0.197 1.197 18 C 0.005 3.995 19 C -0.182 4.182 20 C -0.057 4.057 21 C -0.194 4.194 22 C 0.124 3.876 23 F -0.102 7.102 24 N -0.244 5.244 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.116 0.884 28 H 0.052 0.948 29 H 0.096 0.904 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.186 0.814 33 H 0.215 0.785 34 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -0.247 0.274 -19.870 19.873 hybrid contribution 0.144 0.431 0.487 0.666 sum -0.104 0.705 -19.383 19.396 Atomic orbital electron populations 1.22062 0.92435 1.03306 1.03422 1.21643 0.96073 0.95721 0.79767 0.87651 1.86737 1.77108 1.42905 1.20460 1.24792 0.72142 0.85866 0.85134 1.90456 1.49517 1.18003 1.84349 1.18683 0.96003 0.96535 0.85781 0.93721 1.21539 0.96009 0.98568 1.01530 1.21250 1.46060 0.94619 0.95485 0.92124 1.25690 0.94265 0.97737 1.00228 1.69975 1.44809 1.17640 1.22560 0.85423 0.78106 0.79007 0.78350 1.19928 1.19960 1.19672 1.20539 0.94989 0.88790 0.95148 1.22384 0.96642 1.03493 0.95692 1.22025 0.95998 0.92256 0.95417 1.22296 0.98054 0.97703 1.01371 1.18550 0.95312 0.81304 0.92423 1.91602 1.88519 1.36521 1.93582 1.66496 1.27440 1.10382 1.20131 0.91717 0.92598 0.88446 0.94805 0.90379 0.94187 0.92284 0.81375 0.78543 0.79803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.62 9.41 71.98 0.68 -3.94 16 2 C 0.12 4.04 2.89 29.85 0.09 4.12 16 3 H 0.11 3.28 6.88 -2.39 -0.02 3.27 16 4 O -0.35 -14.92 9.78 -51.42 -0.50 -15.42 16 5 C 0.48 22.82 7.22 71.23 0.51 23.34 16 6 O -0.53 -26.90 14.68 21.94 0.32 -26.58 16 7 C 0.05 2.59 2.74 -12.28 -0.03 2.56 16 8 H 0.05 2.51 8.14 -2.39 -0.02 2.49 16 9 C -0.12 -5.80 8.90 71.99 0.64 -5.16 16 10 C -0.54 -30.68 8.37 25.60 0.21 -30.46 16 11 H 0.06 3.59 6.76 -2.91 -0.02 3.57 16 12 C 0.02 1.14 5.30 84.66 0.45 1.59 16 13 N -0.91 -51.41 11.32 21.45 0.24 -51.17 16 14 Si 0.97 43.91 29.54 68.60 2.03 45.94 16 15 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 16 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 17 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 18 C 0.14 3.98 5.81 42.53 0.25 4.23 16 19 C -0.16 -3.06 9.71 22.36 0.22 -2.84 16 20 C -0.03 -0.40 10.17 22.45 0.23 -0.17 16 21 C -0.17 -2.67 10.09 22.41 0.23 -2.45 16 22 C 0.28 7.00 8.41 84.73 0.71 7.71 16 23 F -0.12 -3.24 17.29 44.97 0.78 -2.46 16 24 N -0.53 -16.40 9.90 -184.94 -1.83 -18.23 16 25 H 0.06 2.05 7.95 -2.38 -0.02 2.03 16 26 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.08 4.11 6.07 -2.38 -0.01 4.09 16 30 H 0.04 1.76 8.12 -2.39 -0.02 1.74 16 31 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 32 H 0.17 2.37 7.95 -2.91 -0.02 2.34 16 33 H 0.20 0.61 8.06 -2.91 -0.02 0.58 16 34 H 0.18 1.46 8.06 -2.91 -0.02 1.43 16 Total: -1.00 -69.35 303.56 6.33 -63.03 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: 1.11 Total: 6.37 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: 4.18 Total: -1.49 kcal Atomic # 7 Polarization: -67.80 SS G_CDS: -1.59 Total: -69.39 kcal Atomic # 8 Polarization: -41.82 SS G_CDS: -0.18 Total: -42.00 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 0.78 Total: -2.46 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -69.35 6.33 -63.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001515621413.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.461 kcal (2) G-P(sol) polarization free energy of solvation -69.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds