Wall clock time and date at job start Mon Mar 30 2020 00:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47832 * 2 1 4 4 C 1.50704 * 109.46909 * 239.99435 * 2 1 3 5 5 H 1.07994 * 120.00578 * 239.99858 * 4 2 1 6 6 C 1.37883 * 119.99442 * 60.00561 * 4 2 1 7 7 N 1.31510 * 120.00081 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99868 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46843 * 89.99707 * 8 6 4 10 10 H 1.48495 * 109.47173 * 209.99829 * 8 6 4 11 11 H 1.48500 * 109.46929 * 330.00096 * 8 6 4 12 12 C 1.50704 * 109.47362 * 120.00234 * 2 1 3 13 13 O 1.20823 * 120.00283 * 119.99086 * 12 2 1 14 14 O 1.34229 * 119.99557 * 299.99690 * 12 2 1 15 15 C 1.45206 * 116.99848 * 179.97438 * 14 12 2 16 16 H 1.09001 * 109.47157 * 29.99835 * 15 14 12 17 17 C 1.53002 * 109.47091 * 269.99807 * 15 14 12 18 18 C 1.50701 * 109.47004 * 150.00100 * 15 14 12 19 19 C 1.38146 * 119.60066 * 245.00128 * 18 15 14 20 20 C 1.38703 * 119.22271 * 179.97438 * 19 18 15 21 21 C 1.38543 * 118.45292 * 359.97438 * 20 19 18 22 22 C 1.38520 * 119.13783 * 359.97438 * 21 20 19 23 23 F 1.35105 * 119.64810 * 180.02562 * 22 21 20 24 24 N 1.31903 * 119.60170 * 64.72879 * 18 15 14 25 25 H 1.08993 * 109.47056 * 59.99579 * 1 2 3 26 26 H 1.08996 * 109.47559 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46652 * 300.00367 * 1 2 3 28 28 H 0.96999 * 119.99682 * 180.02562 * 7 6 4 29 29 H 1.09002 * 109.46838 * 179.97438 * 17 15 14 30 30 H 1.08992 * 109.47056 * 300.00206 * 17 15 14 31 31 H 1.09004 * 109.47006 * 60.00090 * 17 15 14 32 32 H 1.08005 * 120.38804 * 0.02562 * 19 18 15 33 33 H 1.07999 * 120.77146 * 180.02562 * 20 19 18 34 34 H 1.08001 * 120.43424 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0323 -0.7106 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3223 -1.1197 -4.0080 9 1 1.3445 -2.1616 -4.4123 10 1 2.4871 -0.1404 -5.1121 11 1 3.6306 -1.7568 -3.7120 12 6 2.0324 -0.7105 1.2304 13 8 2.7269 -1.6929 1.1196 14 8 1.7081 -0.2518 2.4496 15 6 2.2269 -0.9864 3.5897 16 1 3.1796 -1.4444 3.3238 17 6 1.2309 -2.0767 3.9899 18 6 2.4290 -0.0416 4.7462 19 6 3.7054 0.1964 5.2179 20 6 3.8824 1.0678 6.2824 21 6 2.7641 1.6706 6.8350 22 6 1.5148 1.3852 6.3090 23 9 0.4173 1.9677 6.8396 24 7 1.3855 0.5524 5.2923 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.7082 1.1608 -3.4844 29 1 1.6205 -2.6283 4.8455 30 1 0.2782 -1.6187 4.2557 31 1 1.0846 -2.7601 3.1534 32 1 4.5556 -0.2899 4.7627 33 1 4.8692 1.2722 6.6709 34 1 2.8650 2.3548 7.6645 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001515621417.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:57 Heat of formation + Delta-G solvation = -99.230511 kcal Electronic energy + Delta-G solvation = -19864.245451 eV Core-core repulsion = 16483.945414 eV Total energy + Delta-G solvation = -3380.300037 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.11251 -40.55158 -39.45562 -36.03534 -33.88818 -33.21027 -32.37291 -30.54936 -29.61076 -25.21360 -24.96536 -23.69586 -23.32081 -21.44700 -19.67396 -18.07501 -17.35252 -16.55046 -16.39887 -16.19582 -16.07536 -15.63080 -15.23087 -14.58331 -14.12266 -13.71022 -13.49070 -13.33354 -13.04563 -12.68023 -12.52043 -12.41252 -11.87412 -11.51418 -11.09139 -11.00058 -10.79178 -10.67631 -10.37792 -10.25020 -10.21348 -10.05003 -9.73440 -9.25720 -9.03877 -9.02411 -8.44244 -6.09632 -4.15420 0.62988 0.89708 3.11251 3.26120 3.30809 3.36481 3.36789 3.42518 3.69174 4.19643 4.39088 4.48159 4.66843 4.74854 5.08995 5.19417 5.23632 5.29051 5.46253 5.59396 5.65014 5.78908 5.96604 6.16728 6.29502 6.43014 6.69503 6.90229 6.91980 7.19639 7.45244 7.52096 7.75772 7.95499 8.14776 8.82478 8.93678 9.50036 10.97686 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.032446 B = 0.004253 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.762240 B = 6581.862124 C = 6811.381027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.058 3.942 3 H 0.063 0.937 4 C -0.513 4.513 5 H 0.076 0.924 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.905 3.095 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.272 1.272 12 C 0.466 3.534 13 O -0.516 6.516 14 O -0.349 6.349 15 C 0.131 3.869 16 H 0.100 0.900 17 C -0.161 4.161 18 C 0.173 3.827 19 C -0.169 4.169 20 C -0.047 4.047 21 C -0.195 4.195 22 C 0.308 3.692 23 F -0.113 7.113 24 N -0.487 5.487 25 H 0.096 0.904 26 H 0.031 0.969 27 H 0.024 0.976 28 H 0.263 0.737 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.147 0.853 33 H 0.149 0.851 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.254 0.683 17.949 18.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.040 3.960 3 H 0.081 0.919 4 C -0.551 4.551 5 H 0.094 0.906 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.732 3.268 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.197 1.197 12 C 0.311 3.689 13 O -0.403 6.403 14 O -0.266 6.266 15 C 0.074 3.926 16 H 0.118 0.882 17 C -0.218 4.218 18 C 0.035 3.965 19 C -0.189 4.189 20 C -0.073 4.073 21 C -0.216 4.216 22 C 0.153 3.847 23 F -0.092 7.092 24 N -0.202 5.202 25 H 0.114 0.886 26 H 0.050 0.950 27 H 0.044 0.956 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.165 0.835 33 H 0.166 0.834 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 3.516 0.354 17.493 17.846 hybrid contribution 0.887 -0.144 -0.288 0.944 sum 4.403 0.210 17.204 17.760 Atomic orbital electron populations 1.21728 0.95494 1.00086 1.01816 1.18773 0.94963 0.96923 0.85389 0.91888 1.21130 1.31968 1.13227 0.88733 0.90603 1.24942 0.94924 0.94999 0.99130 1.69884 1.36470 1.22786 1.23852 0.86379 0.79429 0.79215 0.81770 1.20520 1.21154 1.19678 1.25456 0.76272 0.83238 0.83961 1.90481 1.36606 1.26755 1.86493 1.86812 1.69862 1.55272 1.14688 1.21274 0.99728 0.89629 0.81925 0.88206 1.22103 1.00118 0.97565 1.02042 1.20758 0.87639 0.93767 0.94317 1.22075 0.98137 1.00259 0.98445 1.21467 0.99042 0.93085 0.93659 1.21859 0.91635 1.04318 1.03820 1.18158 0.82547 0.92653 0.91310 1.91635 1.52974 1.80986 1.83576 1.66753 1.36299 1.08277 1.08843 0.88595 0.94960 0.95648 0.92690 0.91535 0.90601 0.91067 0.83495 0.83366 0.83412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.24 8.90 37.16 0.33 -2.91 16 2 C 0.06 1.50 2.74 -92.92 -0.25 1.25 16 3 H 0.06 1.68 8.14 -51.93 -0.42 1.26 16 4 C -0.51 -14.36 8.37 -34.44 -0.29 -14.65 16 5 H 0.08 2.20 6.76 -52.49 -0.35 1.84 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.94 11.32 55.43 0.63 -24.32 16 8 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 12 C 0.47 10.93 7.22 36.01 0.26 11.19 16 13 O -0.52 -12.76 14.68 -18.75 -0.28 -13.03 16 14 O -0.35 -7.18 9.77 -39.25 -0.38 -7.56 16 15 C 0.13 2.14 2.89 -27.88 -0.08 2.06 16 16 H 0.10 1.57 6.88 -51.93 -0.36 1.21 16 17 C -0.16 -2.38 9.41 37.16 0.35 -2.03 16 18 C 0.17 2.50 5.81 -82.59 -0.48 2.02 16 19 C -0.17 -1.84 9.71 -39.44 -0.38 -2.22 16 20 C -0.05 -0.40 10.17 -39.30 -0.40 -0.80 16 21 C -0.20 -1.86 10.09 -39.36 -0.40 -2.25 16 22 C 0.31 4.05 8.41 -17.35 -0.15 3.90 16 23 F -0.11 -1.50 17.29 2.25 0.04 -1.46 16 24 N -0.49 -7.59 9.90 -9.81 -0.10 -7.69 16 25 H 0.10 2.50 6.07 -51.93 -0.32 2.18 16 26 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.02 0.55 8.11 -51.93 -0.42 0.13 16 28 H 0.26 6.99 8.31 -40.82 -0.34 6.66 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 1.17 7.95 -51.93 -0.41 0.75 16 31 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.15 1.28 7.95 -52.48 -0.42 0.86 16 33 H 0.15 0.73 8.06 -52.49 -0.42 0.30 16 34 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 303.55 15.07 4.57 4.57 Total: -1.00 -31.14 303.55 -6.07 -37.21 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -3.95 Total: -1.27 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -1.58 Total: -2.86 kcal Atomic # 7 Polarization: -32.54 SS G_CDS: 0.53 Total: -32.01 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.66 Total: -20.60 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.46 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.14 -6.07 -37.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001515621417.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.017 kcal (2) G-P(sol) polarization free energy of solvation -31.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds