Wall clock time and date at job start Mon Mar 30 2020 00:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47832 * 2 1 4 4 C 1.50704 * 109.46909 * 239.99435 * 2 1 3 5 5 H 1.07994 * 120.00578 * 239.99858 * 4 2 1 6 6 C 1.37883 * 119.99442 * 60.00561 * 4 2 1 7 7 N 1.31510 * 120.00081 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99868 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46843 * 89.99707 * 8 6 4 10 10 H 1.48495 * 109.47173 * 209.99829 * 8 6 4 11 11 H 1.48500 * 109.46929 * 330.00096 * 8 6 4 12 12 C 1.50704 * 109.47362 * 120.00234 * 2 1 3 13 13 O 1.20823 * 120.00283 * 119.99086 * 12 2 1 14 14 O 1.34229 * 119.99557 * 299.99690 * 12 2 1 15 15 C 1.45206 * 116.99848 * 179.97438 * 14 12 2 16 16 H 1.09001 * 109.47157 * 29.99835 * 15 14 12 17 17 C 1.53002 * 109.47091 * 269.99807 * 15 14 12 18 18 C 1.50701 * 109.47004 * 150.00100 * 15 14 12 19 19 C 1.38146 * 119.60066 * 245.00128 * 18 15 14 20 20 C 1.38703 * 119.22271 * 179.97438 * 19 18 15 21 21 C 1.38543 * 118.45292 * 359.97438 * 20 19 18 22 22 C 1.38520 * 119.13783 * 359.97438 * 21 20 19 23 23 F 1.35105 * 119.64810 * 180.02562 * 22 21 20 24 24 N 1.31903 * 119.60170 * 64.72879 * 18 15 14 25 25 H 1.08993 * 109.47056 * 59.99579 * 1 2 3 26 26 H 1.08996 * 109.47559 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46652 * 300.00367 * 1 2 3 28 28 H 0.96999 * 119.99682 * 180.02562 * 7 6 4 29 29 H 1.09002 * 109.46838 * 179.97438 * 17 15 14 30 30 H 1.08992 * 109.47056 * 300.00206 * 17 15 14 31 31 H 1.09004 * 109.47006 * 60.00090 * 17 15 14 32 32 H 1.08005 * 120.38804 * 0.02562 * 19 18 15 33 33 H 1.07999 * 120.77146 * 180.02562 * 20 19 18 34 34 H 1.08001 * 120.43424 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0323 -0.7106 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3223 -1.1197 -4.0080 9 1 1.3445 -2.1616 -4.4123 10 1 2.4871 -0.1404 -5.1121 11 1 3.6306 -1.7568 -3.7120 12 6 2.0324 -0.7105 1.2304 13 8 2.7269 -1.6929 1.1196 14 8 1.7081 -0.2518 2.4496 15 6 2.2269 -0.9864 3.5897 16 1 3.1796 -1.4444 3.3238 17 6 1.2309 -2.0767 3.9899 18 6 2.4290 -0.0416 4.7462 19 6 3.7054 0.1964 5.2179 20 6 3.8824 1.0678 6.2824 21 6 2.7641 1.6706 6.8350 22 6 1.5148 1.3852 6.3090 23 9 0.4173 1.9677 6.8396 24 7 1.3855 0.5524 5.2923 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.7082 1.1608 -3.4844 29 1 1.6205 -2.6283 4.8455 30 1 0.2782 -1.6187 4.2557 31 1 1.0846 -2.7601 3.1534 32 1 4.5556 -0.2899 4.7627 33 1 4.8692 1.2722 6.6709 34 1 2.8650 2.3548 7.6645 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001515621417.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:56 Heat of formation + Delta-G solvation = -117.445096 kcal Electronic energy + Delta-G solvation = -19865.035295 eV Core-core repulsion = 16483.945414 eV Total energy + Delta-G solvation = -3381.089881 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.06099 -41.77216 -40.90711 -37.68811 -35.92867 -34.30132 -33.42899 -32.51888 -30.67892 -27.30389 -26.16981 -25.06769 -24.49198 -22.79457 -21.37452 -19.06870 -18.82918 -18.16418 -17.94809 -17.28580 -17.14675 -17.07712 -16.85416 -16.30364 -15.26800 -15.08559 -14.78133 -14.63032 -14.21042 -14.09326 -14.00682 -13.49141 -13.33254 -13.11182 -12.95995 -12.76025 -12.60987 -12.37669 -12.28617 -12.04558 -11.76138 -11.16769 -11.11711 -11.01885 -10.68068 -10.53184 -10.05839 -8.19688 -6.33617 -0.26535 0.07737 1.40849 1.43648 1.44557 1.55271 1.82781 2.40409 2.43724 2.59868 3.10424 3.23990 3.55776 3.81751 3.96648 3.99917 4.10061 4.21283 4.35458 4.62573 4.64642 4.67919 4.73954 4.88282 4.91284 4.97458 5.01150 5.11016 5.36801 5.46570 5.55798 5.67991 5.86365 6.08250 6.57806 6.73346 7.02912 7.35423 8.87015 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.032446 B = 0.004253 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.762240 B = 6581.862124 C = 6811.381027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.050 3.950 3 H 0.047 0.953 4 C -0.537 4.537 5 H 0.060 0.940 6 C 0.021 3.979 7 N -0.911 5.911 8 Si 0.966 3.034 9 H -0.273 1.273 10 H -0.275 1.275 11 H -0.272 1.272 12 C 0.475 3.525 13 O -0.534 6.534 14 O -0.355 6.355 15 C 0.123 3.877 16 H 0.106 0.894 17 C -0.154 4.154 18 C 0.142 3.858 19 C -0.163 4.163 20 C -0.032 4.032 21 C -0.174 4.174 22 C 0.278 3.722 23 F -0.123 7.123 24 N -0.528 5.528 25 H 0.078 0.922 26 H 0.030 0.970 27 H 0.040 0.960 28 H 0.268 0.732 29 H 0.096 0.904 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.169 0.831 33 H 0.198 0.802 34 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.976 0.887 19.350 20.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.031 3.969 3 H 0.065 0.935 4 C -0.574 4.574 5 H 0.079 0.921 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.791 3.209 9 H -0.198 1.198 10 H -0.200 1.200 11 H -0.197 1.197 12 C 0.321 3.679 13 O -0.423 6.423 14 O -0.272 6.272 15 C 0.068 3.932 16 H 0.123 0.877 17 C -0.212 4.212 18 C 0.005 3.995 19 C -0.182 4.182 20 C -0.057 4.057 21 C -0.194 4.194 22 C 0.124 3.876 23 F -0.102 7.102 24 N -0.244 5.244 25 H 0.096 0.904 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.077 0.923 29 H 0.115 0.885 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.186 0.814 33 H 0.215 0.785 34 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 5.226 0.569 18.916 19.633 hybrid contribution 0.371 -0.151 -0.572 0.698 sum 5.597 0.418 18.344 19.183 Atomic orbital electron populations 1.21547 0.94718 0.99864 1.01633 1.18674 0.95672 0.96096 0.86449 0.93542 1.21253 1.32638 1.13299 0.90234 0.92129 1.25690 0.94877 0.95620 1.01726 1.69976 1.36729 1.23516 1.24751 0.85426 0.78804 0.78351 0.78321 1.19831 1.20022 1.19708 1.24794 0.75887 0.82651 0.84614 1.90454 1.37375 1.27393 1.87100 1.86738 1.69805 1.55795 1.14873 1.21644 0.99967 0.90524 0.81065 0.87661 1.22054 0.99567 0.97036 1.02504 1.20545 0.89054 0.95244 0.94668 1.22389 0.97074 1.00063 0.98716 1.22028 1.00775 0.90956 0.91951 1.22297 0.90063 1.03445 1.03629 1.18552 0.83731 0.93443 0.91869 1.91605 1.53773 1.81171 1.83666 1.66497 1.37761 1.09691 1.10455 0.90353 0.95091 0.94071 0.92287 0.88493 0.91687 0.92606 0.81360 0.78540 0.79797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.95 8.90 71.98 0.64 -5.31 16 2 C 0.05 2.65 2.74 -12.28 -0.03 2.62 16 3 H 0.05 2.58 8.14 -2.39 -0.02 2.56 16 4 C -0.54 -30.68 8.37 25.60 0.21 -30.46 16 5 H 0.06 3.59 6.76 -2.91 -0.02 3.57 16 6 C 0.02 1.14 5.30 84.66 0.45 1.59 16 7 N -0.91 -51.39 11.32 21.45 0.24 -51.14 16 8 Si 0.97 43.91 29.54 68.60 2.03 45.93 16 9 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 10 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 11 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 12 C 0.48 22.80 7.22 71.24 0.51 23.32 16 13 O -0.53 -26.89 14.68 21.97 0.32 -26.57 16 14 O -0.35 -14.91 9.77 -51.40 -0.50 -15.41 16 15 C 0.12 4.03 2.89 29.85 0.09 4.12 16 16 H 0.11 3.28 6.88 -2.39 -0.02 3.26 16 17 C -0.15 -4.59 9.41 71.98 0.68 -3.92 16 18 C 0.14 3.97 5.81 42.53 0.25 4.22 16 19 C -0.16 -3.07 9.71 22.36 0.22 -2.85 16 20 C -0.03 -0.40 10.17 22.45 0.23 -0.17 16 21 C -0.17 -2.68 10.09 22.41 0.23 -2.46 16 22 C 0.28 7.00 8.41 84.73 0.71 7.71 16 23 F -0.12 -3.23 17.29 44.97 0.78 -2.46 16 24 N -0.53 -16.38 9.90 -184.95 -1.83 -18.21 16 25 H 0.08 4.17 6.07 -2.39 -0.01 4.15 16 26 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.04 1.85 8.11 -2.38 -0.02 1.83 16 28 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 29 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.06 2.05 7.95 -2.39 -0.02 2.03 16 31 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 32 H 0.17 2.37 7.95 -2.91 -0.02 2.35 16 33 H 0.20 0.61 8.06 -2.91 -0.02 0.59 16 34 H 0.18 1.46 8.06 -2.91 -0.02 1.44 16 Total: -1.00 -69.30 303.55 6.33 -62.97 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: 1.11 Total: 6.48 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: 4.18 Total: -1.59 kcal Atomic # 7 Polarization: -67.76 SS G_CDS: -1.59 Total: -69.35 kcal Atomic # 8 Polarization: -41.80 SS G_CDS: -0.18 Total: -41.98 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.78 Total: -2.46 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Total: -69.30 6.33 -62.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001515621417.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.476 kcal (2) G-P(sol) polarization free energy of solvation -69.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds