Wall clock time and date at job start Mon Mar 30 2020 00:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50697 * 109.47239 * 119.99930 * 2 1 3 5 5 H 1.08002 * 119.99362 * 119.99715 * 4 2 1 6 6 C 1.37867 * 120.00258 * 300.00370 * 4 2 1 7 7 N 1.31511 * 120.00203 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00057 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46873 * 60.00018 * 8 6 4 10 10 H 1.48503 * 109.47134 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47271 * 299.99819 * 8 6 4 12 12 C 1.50698 * 109.47184 * 240.00595 * 2 1 3 13 13 O 1.21281 * 119.99736 * 240.00187 * 12 2 1 14 14 N 1.34779 * 120.00201 * 59.99469 * 12 2 1 15 15 C 1.46503 * 119.99606 * 180.02562 * 14 12 2 16 16 C 1.53000 * 109.46575 * 179.97438 * 15 14 12 17 17 C 1.52997 * 109.47060 * 179.97438 * 16 15 14 18 18 C 1.50701 * 109.47212 * 180.02562 * 17 16 15 19 19 C 1.38421 * 122.53852 * 269.73438 * 18 17 16 20 20 C 1.33391 * 114.91982 * 179.76113 * 19 18 17 21 21 S 1.75874 * 109.59325 * 0.48023 * 20 19 18 22 22 C 1.33389 * 122.54003 * 90.03051 * 18 17 16 23 23 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 25 25 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 26 26 H 0.97006 * 120.00645 * 180.02562 * 7 6 4 27 27 H 0.96991 * 119.99747 * 0.02562 * 14 12 2 28 28 H 1.08992 * 109.47080 * 299.99586 * 15 14 12 29 29 H 1.09001 * 109.47138 * 60.00172 * 15 14 12 30 30 H 1.09002 * 109.47398 * 300.00091 * 16 15 14 31 31 H 1.09001 * 109.47194 * 60.00272 * 16 15 14 32 32 H 1.09002 * 109.47153 * 300.00319 * 17 16 15 33 33 H 1.08998 * 109.47533 * 59.99948 * 17 16 15 34 34 H 1.08004 * 122.53831 * 0.02562 * 19 18 17 35 35 H 1.08002 * 125.19987 * 180.20588 * 20 19 18 36 36 H 1.07999 * 125.20221 * 0.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4826 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1205 4.0079 9 1 3.8065 -1.1209 4.0080 10 1 1.8271 -0.4201 5.2204 11 1 1.8260 -2.5203 4.0076 12 6 2.0324 -0.7103 -1.2305 13 8 2.7296 -1.6964 -1.1193 14 7 1.7068 -0.2498 -2.4546 15 6 2.1947 -0.9407 -3.6508 16 6 1.6842 -0.2197 -4.9000 17 6 2.1943 -0.9408 -6.1492 18 6 1.6919 -0.2303 -7.3797 19 6 0.4936 -0.5566 -7.9908 20 6 0.1945 0.1727 -9.0669 21 16 1.4779 1.3376 -9.3651 22 6 2.3712 0.7568 -7.9657 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 0.7095 1.1617 3.4844 27 1 1.1494 0.5390 -2.5435 28 1 3.2846 -0.9410 -3.6510 29 1 1.8310 -1.9682 -3.6506 30 1 0.5942 -0.2197 -4.8996 31 1 2.0475 0.8080 -4.9003 32 1 3.2843 -0.9404 -6.1494 33 1 1.8314 -1.9686 -6.1492 34 1 -0.1525 -1.3395 -7.6216 35 1 -0.6971 0.0615 -9.6661 36 1 3.3241 1.1405 -7.6322 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520867122.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:36 Heat of formation + Delta-G solvation = -25.940938 kcal Electronic energy + Delta-G solvation = -17175.586037 eV Core-core repulsion = 14364.677250 eV Total energy + Delta-G solvation = -2810.908787 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.96696 -38.48338 -35.15598 -33.68312 -32.41218 -30.47765 -29.33959 -26.37169 -25.09427 -23.48507 -22.23636 -21.44712 -19.29514 -18.85449 -17.80438 -16.33307 -15.94009 -15.73684 -15.25031 -14.85944 -14.31747 -13.89941 -13.64100 -13.28063 -13.00908 -12.90041 -12.52628 -12.41077 -11.94283 -11.92867 -11.49004 -11.37389 -10.97546 -10.90260 -10.81210 -10.67572 -10.65242 -10.20946 -9.92873 -9.04065 -8.94901 -8.64708 -8.52732 -8.37850 -8.27804 -5.99944 -4.02968 0.77684 1.43597 1.75655 2.46776 3.38465 3.40562 3.46287 3.79670 3.98244 4.50281 4.62207 4.73483 4.93516 5.07535 5.23623 5.30950 5.33187 5.38449 5.53017 5.61378 5.81443 5.84236 6.08875 6.11712 6.21535 6.33051 6.39988 6.65566 6.86644 6.96761 7.15317 7.51634 7.79296 8.02856 8.19591 8.50554 9.05897 9.30235 9.62548 11.07714 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.052540 B = 0.002823 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.799807 B = 9915.055515 C =10108.470214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.029 3.971 3 H 0.052 0.948 4 C -0.501 4.501 5 H 0.073 0.927 6 C 0.058 3.942 7 N -0.898 5.898 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.518 3.482 13 O -0.548 6.548 14 N -0.748 5.748 15 C 0.120 3.880 16 C -0.123 4.123 17 C -0.058 4.058 18 C -0.096 4.096 19 C -0.129 4.129 20 C -0.213 4.213 21 S 0.082 5.918 22 C -0.211 4.211 23 H 0.030 0.970 24 H 0.093 0.907 25 H 0.012 0.988 26 H 0.261 0.739 27 H 0.395 0.605 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.141 0.859 35 H 0.163 0.837 36 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.678 1.670 -23.049 23.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.008 3.992 3 H 0.069 0.931 4 C -0.539 4.539 5 H 0.091 0.909 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.308 3.692 13 O -0.424 6.424 14 N -0.402 5.402 15 C -0.005 4.005 16 C -0.161 4.161 17 C -0.099 4.099 18 C -0.108 4.108 19 C -0.159 4.159 20 C -0.348 4.348 21 S 0.345 5.655 22 C -0.346 4.346 23 H 0.050 0.950 24 H 0.111 0.889 25 H 0.031 0.969 26 H 0.071 0.929 27 H 0.229 0.771 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.159 0.841 35 H 0.180 0.820 36 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -0.993 2.185 -23.929 24.049 hybrid contribution -0.293 -1.045 1.710 2.025 sum -1.285 1.140 -22.219 22.285 Atomic orbital electron populations 1.21740 0.96596 0.99769 1.00884 1.18864 0.94115 0.96813 0.89446 0.93069 1.21120 1.30935 1.12795 0.89068 0.90861 1.24949 0.95143 0.95081 0.99095 1.69862 1.37181 1.23111 1.23592 0.86509 0.79278 0.79721 0.81643 1.20205 1.21395 1.20205 1.21961 0.78444 0.84268 0.84551 1.90523 1.38068 1.26979 1.86855 1.46288 1.55573 1.32678 1.05711 1.21179 0.98973 0.96299 0.84027 1.21759 1.01539 0.99910 0.92924 1.20261 1.00995 0.98699 0.89930 1.18986 0.95189 0.97903 0.98766 1.20164 0.97531 1.01925 0.96303 1.25594 1.03818 1.01903 1.03497 1.84270 1.14276 1.37967 1.28970 1.25497 1.05219 1.03223 1.00645 0.95042 0.88883 0.96936 0.92940 0.77102 0.92262 0.92254 0.91199 0.91277 0.90609 0.90469 0.84129 0.81961 0.81856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 8.87 37.16 0.33 -2.74 16 2 C 0.03 0.73 2.64 -92.92 -0.25 0.48 16 3 H 0.05 1.33 8.14 -51.93 -0.42 0.91 16 4 C -0.50 -14.44 8.37 -34.45 -0.29 -14.73 16 5 H 0.07 2.23 6.75 -52.49 -0.35 1.87 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 7 N -0.90 -25.48 11.32 55.43 0.63 -24.85 16 8 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 C 0.52 12.03 7.15 -10.99 -0.08 11.95 16 13 O -0.55 -14.60 15.46 5.56 0.09 -14.52 16 14 N -0.75 -13.10 5.45 -60.29 -0.33 -13.43 16 15 C 0.12 1.73 5.67 -4.04 -0.02 1.70 16 16 C -0.12 -1.30 5.31 -26.73 -0.14 -1.44 16 17 C -0.06 -0.54 5.47 -27.88 -0.15 -0.69 16 18 C -0.10 -0.90 5.06 -106.25 -0.54 -1.44 16 19 C -0.13 -1.14 9.98 -41.21 -0.41 -1.55 16 20 C -0.21 -1.73 11.23 29.04 0.33 -1.40 16 21 S 0.08 0.67 23.34 -107.50 -2.51 -1.84 16 22 C -0.21 -1.88 10.98 29.04 0.32 -1.56 16 23 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 25 H 0.01 0.23 7.56 -51.93 -0.39 -0.16 16 26 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 27 H 0.40 5.99 7.89 -40.82 -0.32 5.67 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.66 8.12 -51.93 -0.42 0.24 16 33 H 0.08 0.67 8.13 -51.93 -0.42 0.25 16 34 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 35 H 0.16 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.16 1.24 8.06 -52.49 -0.42 0.81 16 LS Contribution 318.31 15.07 4.80 4.80 Total: -1.00 -31.92 318.31 -8.51 -40.43 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -5.17 Total: 2.24 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: -1.00 Total: -9.88 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.30 Total: -38.28 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: 0.09 Total: -14.52 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 16 Polarization: 0.67 SS G_CDS: -2.51 Total: -1.84 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.92 -8.51 -40.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520867122.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.492 kcal (2) G-P(sol) polarization free energy of solvation -31.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds