Wall clock time and date at job start Mon Mar 30 2020 00:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50697 * 109.47239 * 119.99930 * 2 1 3 5 5 H 1.08002 * 119.99362 * 119.99715 * 4 2 1 6 6 C 1.37867 * 120.00258 * 300.00370 * 4 2 1 7 7 N 1.31511 * 120.00203 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00057 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46873 * 60.00018 * 8 6 4 10 10 H 1.48503 * 109.47134 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47271 * 299.99819 * 8 6 4 12 12 C 1.50698 * 109.47184 * 240.00595 * 2 1 3 13 13 O 1.21281 * 119.99736 * 240.00187 * 12 2 1 14 14 N 1.34779 * 120.00201 * 59.99469 * 12 2 1 15 15 C 1.46503 * 119.99606 * 180.02562 * 14 12 2 16 16 C 1.53000 * 109.46575 * 179.97438 * 15 14 12 17 17 C 1.52997 * 109.47060 * 179.97438 * 16 15 14 18 18 C 1.50701 * 109.47212 * 180.02562 * 17 16 15 19 19 C 1.38421 * 122.53852 * 269.73438 * 18 17 16 20 20 C 1.33391 * 114.91982 * 179.76113 * 19 18 17 21 21 S 1.75874 * 109.59325 * 0.48023 * 20 19 18 22 22 C 1.33389 * 122.54003 * 90.03051 * 18 17 16 23 23 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 25 25 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 26 26 H 0.97006 * 120.00645 * 180.02562 * 7 6 4 27 27 H 0.96991 * 119.99747 * 0.02562 * 14 12 2 28 28 H 1.08992 * 109.47080 * 299.99586 * 15 14 12 29 29 H 1.09001 * 109.47138 * 60.00172 * 15 14 12 30 30 H 1.09002 * 109.47398 * 300.00091 * 16 15 14 31 31 H 1.09001 * 109.47194 * 60.00272 * 16 15 14 32 32 H 1.09002 * 109.47153 * 300.00319 * 17 16 15 33 33 H 1.08998 * 109.47533 * 59.99948 * 17 16 15 34 34 H 1.08004 * 122.53831 * 0.02562 * 19 18 17 35 35 H 1.08002 * 125.19987 * 180.20588 * 20 19 18 36 36 H 1.07999 * 125.20221 * 0.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4826 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1205 4.0079 9 1 3.8065 -1.1209 4.0080 10 1 1.8271 -0.4201 5.2204 11 1 1.8260 -2.5203 4.0076 12 6 2.0324 -0.7103 -1.2305 13 8 2.7296 -1.6964 -1.1193 14 7 1.7068 -0.2498 -2.4546 15 6 2.1947 -0.9407 -3.6508 16 6 1.6842 -0.2197 -4.9000 17 6 2.1943 -0.9408 -6.1492 18 6 1.6919 -0.2303 -7.3797 19 6 0.4936 -0.5566 -7.9908 20 6 0.1945 0.1727 -9.0669 21 16 1.4779 1.3376 -9.3651 22 6 2.3712 0.7568 -7.9657 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 0.7095 1.1617 3.4844 27 1 1.1494 0.5390 -2.5435 28 1 3.2846 -0.9410 -3.6510 29 1 1.8310 -1.9682 -3.6506 30 1 0.5942 -0.2197 -4.8996 31 1 2.0475 0.8080 -4.9003 32 1 3.2843 -0.9404 -6.1494 33 1 1.8314 -1.9686 -6.1492 34 1 -0.1525 -1.3395 -7.6216 35 1 -0.6971 0.0615 -9.6661 36 1 3.3241 1.1405 -7.6322 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001520867122.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:35 Heat of formation + Delta-G solvation = -45.331527 kcal Electronic energy + Delta-G solvation = -17176.426876 eV Core-core repulsion = 14364.677250 eV Total energy + Delta-G solvation = -2811.749626 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.55484 -39.34544 -36.46248 -35.74022 -33.66955 -32.30892 -30.21595 -27.45221 -27.12917 -24.66355 -23.58490 -22.50709 -20.98625 -19.55137 -18.48823 -18.32209 -17.71727 -16.87947 -16.60410 -16.35367 -15.83923 -15.37935 -14.68155 -14.49157 -14.35910 -13.88157 -13.85695 -13.42746 -13.26613 -12.96696 -12.90158 -12.79646 -12.62144 -12.58302 -12.29441 -12.18648 -11.99383 -11.69695 -11.53095 -11.03884 -10.60061 -10.29750 -9.92728 -9.67069 -9.24417 -8.14399 -6.24979 0.13941 0.81627 1.12688 1.41541 1.43165 1.51740 1.79869 1.95557 2.38536 2.59125 3.15037 3.84037 3.99993 4.18727 4.30515 4.35188 4.44835 4.55749 4.67355 4.73535 4.76489 4.79611 4.93816 4.97596 5.04306 5.09905 5.22385 5.30629 5.51081 5.55933 5.63762 5.65894 5.76641 5.95734 6.23070 6.76133 6.88332 7.40813 7.57329 8.91265 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.052540 B = 0.002823 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.799807 B = 9915.055515 C =10108.470214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.023 3.977 3 H 0.041 0.959 4 C -0.531 4.531 5 H 0.048 0.952 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 0.955 3.045 9 H -0.276 1.276 10 H -0.274 1.274 11 H -0.276 1.276 12 C 0.519 3.481 13 O -0.590 6.590 14 N -0.727 5.727 15 C 0.119 3.881 16 C -0.108 4.108 17 C -0.054 4.054 18 C -0.106 4.106 19 C -0.143 4.143 20 C -0.215 4.215 21 S 0.085 5.915 22 C -0.221 4.221 23 H 0.022 0.978 24 H 0.070 0.930 25 H 0.053 0.947 26 H 0.265 0.735 27 H 0.410 0.590 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.151 0.849 35 H 0.182 0.818 36 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.311 2.051 -24.166 24.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.002 3.998 3 H 0.059 0.941 4 C -0.570 4.570 5 H 0.066 0.934 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.781 3.219 9 H -0.202 1.202 10 H -0.199 1.199 11 H -0.201 1.201 12 C 0.308 3.692 13 O -0.470 6.470 14 N -0.380 5.380 15 C -0.005 4.005 16 C -0.146 4.146 17 C -0.094 4.094 18 C -0.118 4.118 19 C -0.173 4.173 20 C -0.350 4.350 21 S 0.348 5.652 22 C -0.357 4.357 23 H 0.041 0.959 24 H 0.089 0.911 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.246 0.754 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.169 0.831 35 H 0.200 0.800 36 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -1.654 2.605 -25.090 25.279 hybrid contribution -0.101 -1.122 1.974 2.273 sum -1.756 1.483 -23.116 23.230 Atomic orbital electron populations 1.21558 0.95025 0.99401 1.01757 1.18810 0.95381 0.95909 0.89733 0.94141 1.21284 1.31659 1.12783 0.91249 0.93382 1.25601 0.95190 0.95760 1.01435 1.69940 1.37210 1.23564 1.24378 0.85653 0.78672 0.78751 0.78819 1.20183 1.19875 1.20138 1.21543 0.78235 0.83692 0.85771 1.90499 1.40090 1.28780 1.87640 1.46033 1.54365 1.32603 1.05000 1.21367 0.98710 0.96330 0.84089 1.21635 1.01816 0.99755 0.91394 1.20198 1.01244 0.98779 0.89205 1.19046 0.95630 0.98206 0.98955 1.20355 0.97704 1.02568 0.96715 1.25901 1.04301 1.01341 1.03423 1.84270 1.14312 1.37945 1.28641 1.25723 1.05761 1.03274 1.00915 0.95888 0.91118 0.92856 0.92575 0.75417 0.92869 0.92784 0.90491 0.90681 0.90232 0.89981 0.83111 0.80044 0.80950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.47 8.87 71.98 0.64 -4.83 16 2 C 0.02 1.16 2.64 -12.29 -0.03 1.13 16 3 H 0.04 2.13 8.14 -2.39 -0.02 2.11 16 4 C -0.53 -31.24 8.37 25.60 0.21 -31.02 16 5 H 0.05 3.02 6.75 -2.91 -0.02 3.00 16 6 C 0.02 1.09 5.30 84.65 0.45 1.54 16 7 N -0.91 -51.60 11.32 21.44 0.24 -51.36 16 8 Si 0.96 45.30 29.54 68.60 2.03 47.33 16 9 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 10 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 12 C 0.52 24.09 7.15 87.66 0.63 24.72 16 13 O -0.59 -32.00 15.46 -3.03 -0.05 -32.05 16 14 N -0.73 -24.47 5.45 -463.06 -2.52 -27.00 16 15 C 0.12 3.26 5.67 86.38 0.49 3.75 16 16 C -0.11 -2.03 5.31 30.59 0.16 -1.87 16 17 C -0.05 -0.88 5.47 29.85 0.16 -0.72 16 18 C -0.11 -1.77 5.06 -20.92 -0.11 -1.88 16 19 C -0.14 -2.23 9.98 21.22 0.21 -2.02 16 20 C -0.21 -3.04 11.23 66.72 0.75 -2.29 16 21 S 0.08 1.25 23.34 -56.49 -1.32 -0.07 16 22 C -0.22 -3.57 10.98 66.72 0.73 -2.84 16 23 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.07 3.58 6.07 -2.39 -0.01 3.56 16 25 H 0.05 1.94 7.56 -2.39 -0.02 1.93 16 26 H 0.27 14.21 8.31 -92.70 -0.77 13.44 16 27 H 0.41 11.48 7.89 -92.71 -0.73 10.74 16 28 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.08 1.24 8.12 -2.39 -0.02 1.22 16 33 H 0.08 1.27 8.13 -2.39 -0.02 1.25 16 34 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 35 H 0.18 1.72 8.06 -2.91 -0.02 1.70 16 36 H 0.17 2.32 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -68.64 318.31 3.02 -65.62 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 0.34 Total: 13.86 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: 4.30 Total: -16.33 kcal Atomic # 7 Polarization: -76.08 SS G_CDS: -2.28 Total: -78.36 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: -0.05 Total: -32.05 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -1.32 Total: -0.07 kcal Total: -68.64 3.02 -65.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520867122.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.287 kcal (2) G-P(sol) polarization free energy of solvation -68.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds