Wall clock time and date at job start Mon Mar 30 2020 00:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.50698 * 109.47177 * 119.99481 * 2 1 3 13 13 O 1.21280 * 119.99901 * 120.00184 * 12 2 1 14 14 N 1.34774 * 120.00338 * 300.00305 * 12 2 1 15 15 C 1.46497 * 120.00288 * 179.97438 * 14 12 2 16 16 C 1.53000 * 109.47302 * 180.02562 * 15 14 12 17 17 C 1.53001 * 109.47355 * 180.02562 * 16 15 14 18 18 C 1.50694 * 109.47168 * 179.97438 * 17 16 15 19 19 C 1.38424 * 122.54012 * 269.73578 * 18 17 16 20 20 C 1.33396 * 114.92109 * 179.76391 * 19 18 17 21 21 S 1.75889 * 109.59316 * 0.47618 * 20 19 18 22 22 C 1.33394 * 122.54167 * 90.02679 * 18 17 16 23 23 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 24 24 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 25 25 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 0.97006 * 120.00251 * 0.02562 * 14 12 2 28 28 H 1.09002 * 109.47081 * 299.99975 * 15 14 12 29 29 H 1.09000 * 109.47237 * 60.00287 * 15 14 12 30 30 H 1.09002 * 109.46807 * 299.99867 * 16 15 14 31 31 H 1.08998 * 109.47285 * 60.00265 * 16 15 14 32 32 H 1.09002 * 109.46926 * 299.99636 * 17 16 15 33 33 H 1.08998 * 109.46837 * 59.99832 * 17 16 15 34 34 H 1.08003 * 122.54099 * 359.97438 * 19 18 17 35 35 H 1.08004 * 125.20342 * 180.20780 * 20 19 18 36 36 H 1.08001 * 125.20090 * 0.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 6 2.0323 -0.7103 1.2305 13 8 2.7296 -1.6963 1.1193 14 7 1.7067 -0.2498 2.4546 15 6 2.1946 -0.9406 3.6508 16 6 1.6842 -0.2197 4.9000 17 6 2.1942 -0.9408 6.1493 18 6 1.6920 -0.2303 7.3797 19 6 2.3991 0.7909 7.9906 20 6 1.8113 1.3161 9.0667 21 16 0.2852 0.4943 9.3653 22 6 0.5349 -0.5415 7.9659 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.7088 1.1611 -3.4845 27 1 1.1487 0.5387 2.5436 28 1 1.8309 -1.9682 3.6507 29 1 3.2846 -0.9410 3.6510 30 1 2.0476 0.8080 4.9003 31 1 0.5942 -0.2197 4.8997 32 1 1.8312 -1.9686 6.1492 33 1 3.2842 -0.9404 6.1494 34 1 3.3529 1.1386 7.6218 35 1 2.2133 2.1198 9.6658 36 1 -0.1445 -1.3121 7.6325 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520867123.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:39 Heat of formation + Delta-G solvation = -25.951715 kcal Electronic energy + Delta-G solvation = -17175.029316 eV Core-core repulsion = 14364.120062 eV Total energy + Delta-G solvation = -2810.909254 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.96667 -38.48292 -35.15557 -33.68261 -32.41171 -30.47766 -29.33883 -26.37208 -25.09424 -23.48400 -22.23710 -21.44622 -19.29423 -18.85419 -17.80470 -16.32441 -15.98649 -15.68550 -15.24923 -14.88263 -14.33073 -13.84176 -13.65839 -13.28705 -13.09352 -12.81804 -12.48449 -12.45996 -11.96251 -11.91764 -11.44459 -11.41146 -10.97747 -10.91137 -10.79582 -10.68222 -10.65169 -10.20936 -9.92815 -9.04026 -8.94948 -8.64723 -8.52697 -8.37846 -8.27758 -6.00000 -4.02949 0.77680 1.43614 1.75650 2.46741 3.38446 3.40547 3.46282 3.79688 3.98260 4.50279 4.62126 4.73556 4.93545 5.07529 5.23590 5.30873 5.33225 5.38428 5.53014 5.61370 5.81431 5.84205 6.08689 6.11959 6.21422 6.33099 6.39967 6.65537 6.86616 6.96783 7.15327 7.51622 7.79328 8.02877 8.19616 8.50553 9.05911 9.30251 9.62497 11.07662 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.052581 B = 0.002828 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.383694 B = 9898.240230 C =10117.469899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.029 3.971 3 H 0.052 0.948 4 C -0.501 4.501 5 H 0.073 0.927 6 C 0.057 3.943 7 N -0.898 5.898 8 Si 0.901 3.099 9 H -0.288 1.288 10 H -0.276 1.276 11 H -0.277 1.277 12 C 0.518 3.482 13 O -0.548 6.548 14 N -0.748 5.748 15 C 0.120 3.880 16 C -0.123 4.123 17 C -0.058 4.058 18 C -0.096 4.096 19 C -0.129 4.129 20 C -0.213 4.213 21 S 0.081 5.919 22 C -0.210 4.210 23 H 0.012 0.988 24 H 0.093 0.907 25 H 0.030 0.970 26 H 0.261 0.739 27 H 0.395 0.605 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.141 0.859 35 H 0.163 0.837 36 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.446 1.833 23.047 23.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.008 3.992 3 H 0.069 0.931 4 C -0.539 4.539 5 H 0.091 0.909 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.729 3.271 9 H -0.214 1.214 10 H -0.202 1.202 11 H -0.202 1.202 12 C 0.308 3.692 13 O -0.424 6.424 14 N -0.402 5.402 15 C -0.005 4.005 16 C -0.161 4.161 17 C -0.099 4.099 18 C -0.108 4.108 19 C -0.159 4.159 20 C -0.348 4.348 21 S 0.345 5.655 22 C -0.346 4.346 23 H 0.031 0.969 24 H 0.111 0.889 25 H 0.050 0.950 26 H 0.071 0.929 27 H 0.229 0.771 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.159 0.841 35 H 0.180 0.820 36 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -2.157 1.361 23.927 24.063 hybrid contribution 1.068 -0.082 -1.710 2.017 sum -1.089 1.278 22.217 22.281 Atomic orbital electron populations 1.21738 0.96600 0.99766 1.00887 1.18862 0.94113 0.96815 0.89445 0.93064 1.21123 1.30933 1.12798 0.89067 0.90860 1.24956 0.95144 0.95086 0.99100 1.69866 1.37145 1.23140 1.23586 0.86507 0.79279 0.79714 0.81633 1.21395 1.20199 1.20213 1.21960 0.78447 0.84267 0.84550 1.90522 1.38069 1.26980 1.86855 1.46289 1.55542 1.32706 1.05711 1.21179 0.98995 0.96278 0.84028 1.21759 1.01436 1.00012 0.92923 1.20260 1.01106 0.98589 0.89929 1.18986 0.94834 0.98258 0.98767 1.20165 1.01842 0.97611 0.96305 1.25597 0.99282 1.06436 1.03490 1.84275 1.21254 1.31000 1.28971 1.25499 1.02128 1.06307 1.00638 0.96940 0.88877 0.95049 0.92944 0.77101 0.92285 0.92234 0.91211 0.91266 0.90605 0.90470 0.84125 0.81961 0.81860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 8.87 37.16 0.33 -2.74 16 2 C 0.03 0.73 2.64 -92.93 -0.25 0.48 16 3 H 0.05 1.34 8.14 -51.92 -0.42 0.91 16 4 C -0.50 -14.44 8.37 -34.44 -0.29 -14.73 16 5 H 0.07 2.23 6.75 -52.49 -0.35 1.87 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.90 -25.48 11.32 55.43 0.63 -24.85 16 8 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 9 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 C 0.52 12.03 7.15 -10.99 -0.08 11.95 16 13 O -0.55 -14.60 15.46 5.56 0.09 -14.52 16 14 N -0.75 -13.10 5.45 -60.30 -0.33 -13.43 16 15 C 0.12 1.73 5.67 -4.04 -0.02 1.70 16 16 C -0.12 -1.30 5.31 -26.73 -0.14 -1.44 16 17 C -0.06 -0.54 5.47 -27.89 -0.15 -0.69 16 18 C -0.10 -0.90 5.06 -106.25 -0.54 -1.44 16 19 C -0.13 -1.13 9.98 -41.21 -0.41 -1.55 16 20 C -0.21 -1.73 11.23 29.04 0.33 -1.40 16 21 S 0.08 0.67 23.34 -107.50 -2.51 -1.84 16 22 C -0.21 -1.88 10.98 29.04 0.32 -1.56 16 23 H 0.01 0.23 7.56 -51.93 -0.39 -0.16 16 24 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 25 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 27 H 0.40 5.99 7.89 -40.82 -0.32 5.67 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.66 8.12 -51.93 -0.42 0.24 16 33 H 0.08 0.67 8.13 -51.93 -0.42 0.25 16 34 H 0.14 1.06 8.06 -52.48 -0.42 0.63 16 35 H 0.16 0.97 8.06 -52.48 -0.42 0.54 16 36 H 0.16 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 318.31 15.07 4.80 4.80 Total: -1.00 -31.92 318.31 -8.51 -40.43 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -5.17 Total: 2.24 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: -1.00 Total: -9.89 kcal Atomic # 7 Polarization: -38.57 SS G_CDS: 0.30 Total: -38.28 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: 0.09 Total: -14.52 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Atomic # 16 Polarization: 0.67 SS G_CDS: -2.51 Total: -1.84 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.92 -8.51 -40.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520867123.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.482 kcal (2) G-P(sol) polarization free energy of solvation -31.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds