Wall clock time and date at job start Mon Mar 30 2020 00:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.50698 * 109.47177 * 119.99481 * 2 1 3 13 13 O 1.21280 * 119.99901 * 120.00184 * 12 2 1 14 14 N 1.34774 * 120.00338 * 300.00305 * 12 2 1 15 15 C 1.46497 * 120.00288 * 179.97438 * 14 12 2 16 16 C 1.53000 * 109.47302 * 180.02562 * 15 14 12 17 17 C 1.53001 * 109.47355 * 180.02562 * 16 15 14 18 18 C 1.50694 * 109.47168 * 179.97438 * 17 16 15 19 19 C 1.38424 * 122.54012 * 269.73578 * 18 17 16 20 20 C 1.33396 * 114.92109 * 179.76391 * 19 18 17 21 21 S 1.75889 * 109.59316 * 0.47618 * 20 19 18 22 22 C 1.33394 * 122.54167 * 90.02679 * 18 17 16 23 23 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 24 24 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 25 25 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 0.97006 * 120.00251 * 0.02562 * 14 12 2 28 28 H 1.09002 * 109.47081 * 299.99975 * 15 14 12 29 29 H 1.09000 * 109.47237 * 60.00287 * 15 14 12 30 30 H 1.09002 * 109.46807 * 299.99867 * 16 15 14 31 31 H 1.08998 * 109.47285 * 60.00265 * 16 15 14 32 32 H 1.09002 * 109.46926 * 299.99636 * 17 16 15 33 33 H 1.08998 * 109.46837 * 59.99832 * 17 16 15 34 34 H 1.08003 * 122.54099 * 359.97438 * 19 18 17 35 35 H 1.08004 * 125.20342 * 180.20780 * 20 19 18 36 36 H 1.08001 * 125.20090 * 0.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 6 2.0323 -0.7103 1.2305 13 8 2.7296 -1.6963 1.1193 14 7 1.7067 -0.2498 2.4546 15 6 2.1946 -0.9406 3.6508 16 6 1.6842 -0.2197 4.9000 17 6 2.1942 -0.9408 6.1493 18 6 1.6920 -0.2303 7.3797 19 6 2.3991 0.7909 7.9906 20 6 1.8113 1.3161 9.0667 21 16 0.2852 0.4943 9.3653 22 6 0.5349 -0.5415 7.9659 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.7088 1.1611 -3.4845 27 1 1.1487 0.5387 2.5436 28 1 1.8309 -1.9682 3.6507 29 1 3.2846 -0.9410 3.6510 30 1 2.0476 0.8080 4.9003 31 1 0.5942 -0.2197 4.8997 32 1 1.8312 -1.9686 6.1492 33 1 3.2842 -0.9404 6.1494 34 1 3.3529 1.1386 7.6218 35 1 2.2133 2.1198 9.6658 36 1 -0.1445 -1.3121 7.6325 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001520867123.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:38 Heat of formation + Delta-G solvation = -45.341993 kcal Electronic energy + Delta-G solvation = -17175.870141 eV Core-core repulsion = 14364.120062 eV Total energy + Delta-G solvation = -2811.750080 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.55510 -39.34460 -36.46214 -35.73989 -33.66917 -32.30937 -30.21523 -27.45199 -27.13018 -24.66255 -23.58580 -22.50650 -20.98554 -19.55124 -18.49464 -18.31199 -17.72495 -16.87743 -16.61778 -16.28732 -15.94142 -15.29965 -14.70973 -14.52671 -14.33453 -13.87483 -13.83066 -13.47857 -13.24073 -12.96469 -12.88609 -12.80916 -12.62120 -12.58644 -12.29680 -12.18451 -11.99357 -11.69727 -11.53073 -11.03951 -10.60049 -10.29741 -9.92720 -9.67039 -9.24391 -8.14459 -6.24960 0.13931 0.81652 1.12662 1.41533 1.43177 1.51752 1.79820 1.95569 2.38551 2.59128 3.14973 3.84030 3.99975 4.18805 4.30571 4.35074 4.44658 4.55954 4.67333 4.73496 4.75950 4.80198 4.93530 4.97351 5.04254 5.10152 5.22174 5.30680 5.50973 5.55975 5.63662 5.65979 5.76619 5.95693 6.23054 6.76127 6.88332 7.40768 7.57325 8.91209 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.052581 B = 0.002828 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.383694 B = 9898.240230 C =10117.469899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.023 3.977 3 H 0.041 0.959 4 C -0.531 4.531 5 H 0.048 0.952 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 0.956 3.044 9 H -0.274 1.274 10 H -0.276 1.276 11 H -0.276 1.276 12 C 0.519 3.481 13 O -0.590 6.590 14 N -0.727 5.727 15 C 0.119 3.881 16 C -0.108 4.108 17 C -0.054 4.054 18 C -0.106 4.106 19 C -0.143 4.143 20 C -0.214 4.214 21 S 0.085 5.915 22 C -0.221 4.221 23 H 0.052 0.948 24 H 0.070 0.930 25 H 0.022 0.978 26 H 0.265 0.735 27 H 0.410 0.590 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.151 0.849 35 H 0.182 0.818 36 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.839 2.384 24.164 24.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.002 3.998 3 H 0.059 0.941 4 C -0.570 4.570 5 H 0.066 0.934 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.781 3.219 9 H -0.199 1.199 10 H -0.202 1.202 11 H -0.202 1.202 12 C 0.308 3.692 13 O -0.470 6.470 14 N -0.380 5.380 15 C -0.005 4.005 16 C -0.146 4.146 17 C -0.094 4.094 18 C -0.118 4.118 19 C -0.174 4.174 20 C -0.350 4.350 21 S 0.348 5.652 22 C -0.356 4.356 23 H 0.071 0.929 24 H 0.089 0.911 25 H 0.041 0.959 26 H 0.074 0.926 27 H 0.246 0.754 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.169 0.831 35 H 0.199 0.801 36 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -2.579 1.951 25.087 25.295 hybrid contribution 1.178 -0.217 -1.973 2.308 sum -1.400 1.735 23.114 23.221 Atomic orbital electron populations 1.21557 0.95046 0.99386 1.01757 1.18808 0.95363 0.95920 0.89732 0.94119 1.21287 1.31660 1.12786 0.91247 0.93382 1.25609 0.95191 0.95762 1.01440 1.69943 1.37174 1.23591 1.24375 0.85651 0.78684 0.78735 0.78810 1.19874 1.20155 1.20165 1.21542 0.78238 0.83690 0.85770 1.90499 1.40093 1.28778 1.87640 1.46033 1.54337 1.32629 1.05000 1.21367 0.98759 0.96282 0.84091 1.21636 1.01669 0.99902 0.91393 1.20198 1.01412 0.98611 0.89205 1.19046 0.95154 0.98685 0.98959 1.20357 1.02474 0.97802 0.96721 1.25904 0.98997 1.06650 1.03414 1.84274 1.21454 1.30802 1.28642 1.25725 1.02320 1.06701 1.00902 0.92867 0.91109 0.95913 0.92577 0.75415 0.92867 0.92790 0.90538 0.90635 0.90215 0.89997 0.83123 0.80051 0.80938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.47 8.87 71.98 0.64 -4.83 16 2 C 0.02 1.17 2.64 -12.29 -0.03 1.13 16 3 H 0.04 2.14 8.14 -2.38 -0.02 2.12 16 4 C -0.53 -31.24 8.37 25.60 0.21 -31.02 16 5 H 0.05 3.02 6.75 -2.91 -0.02 3.00 16 6 C 0.02 1.08 5.30 84.66 0.45 1.53 16 7 N -0.91 -51.59 11.32 21.45 0.24 -51.35 16 8 Si 0.96 45.30 29.54 68.60 2.03 47.33 16 9 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 10 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 12 C 0.52 24.09 7.15 87.66 0.63 24.72 16 13 O -0.59 -32.01 15.46 -3.03 -0.05 -32.05 16 14 N -0.73 -24.48 5.45 -463.07 -2.52 -27.00 16 15 C 0.12 3.26 5.67 86.38 0.49 3.75 16 16 C -0.11 -2.03 5.31 30.59 0.16 -1.87 16 17 C -0.05 -0.88 5.47 29.85 0.16 -0.72 16 18 C -0.11 -1.77 5.06 -20.92 -0.11 -1.88 16 19 C -0.14 -2.24 9.98 21.22 0.21 -2.03 16 20 C -0.21 -3.04 11.23 66.72 0.75 -2.29 16 21 S 0.08 1.25 23.34 -56.49 -1.32 -0.07 16 22 C -0.22 -3.56 10.98 66.72 0.73 -2.83 16 23 H 0.05 1.94 7.56 -2.39 -0.02 1.92 16 24 H 0.07 3.58 6.07 -2.39 -0.01 3.57 16 25 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 27 H 0.41 11.48 7.89 -92.70 -0.73 10.74 16 28 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.08 1.24 8.12 -2.39 -0.02 1.22 16 33 H 0.08 1.27 8.13 -2.39 -0.02 1.25 16 34 H 0.15 1.96 8.06 -2.91 -0.02 1.93 16 35 H 0.18 1.73 8.06 -2.91 -0.02 1.70 16 36 H 0.17 2.32 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -68.64 318.31 3.02 -65.61 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 0.34 Total: 13.87 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: 4.30 Total: -16.34 kcal Atomic # 7 Polarization: -76.07 SS G_CDS: -2.28 Total: -78.35 kcal Atomic # 8 Polarization: -32.01 SS G_CDS: -0.05 Total: -32.05 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -1.32 Total: -0.07 kcal Total: -68.64 3.02 -65.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520867123.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.272 kcal (2) G-P(sol) polarization free energy of solvation -68.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds