Wall clock time and date at job start Mon Mar 30 2020 00:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.47138 * 2 1 4 4 C 1.46493 * 120.00291 * 277.52946 * 3 2 1 5 5 C 1.50706 * 109.46963 * 269.99781 * 4 3 2 6 6 H 1.07993 * 119.99768 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99770 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00195 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99799 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47133 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47253 * 120.00430 * 9 7 5 12 12 H 1.48509 * 109.46981 * 240.00442 * 9 7 5 13 13 C 1.34777 * 119.99627 * 97.52709 * 3 2 1 14 14 O 1.21569 * 120.00111 * 185.77615 * 13 3 2 15 15 C 1.47735 * 120.00023 * 5.77137 * 13 3 2 16 16 C 1.39648 * 120.10051 * 314.23877 * 15 13 3 17 17 C 1.37888 * 119.98258 * 179.97438 * 16 15 13 18 18 C 1.38525 * 120.18210 * 0.02562 * 17 16 15 19 19 F 1.35103 * 119.90610 * 179.97438 * 18 17 16 20 20 C 1.39084 * 120.19793 * 359.97438 * 18 17 16 21 21 O 1.35962 * 119.99584 * 179.72499 * 20 18 17 22 22 C 1.38327 * 120.01205 * 0.02562 * 20 18 17 23 23 H 1.09000 * 109.47323 * 189.47446 * 1 2 3 24 24 H 1.09005 * 109.47065 * 309.47101 * 1 2 3 25 25 H 1.09000 * 109.47512 * 69.47011 * 1 2 3 26 26 H 1.09006 * 109.46918 * 240.00570 * 2 1 3 27 27 H 1.08995 * 109.47542 * 120.00321 * 2 1 3 28 28 H 1.09001 * 109.47257 * 29.99725 * 4 3 2 29 29 H 1.08999 * 109.47140 * 150.00089 * 4 3 2 30 30 H 0.96998 * 119.99941 * 179.97438 * 8 7 5 31 31 H 1.08002 * 120.00585 * 359.95280 * 16 15 13 32 32 H 1.07996 * 119.90791 * 179.97438 * 17 16 15 33 33 H 0.96704 * 113.99800 * 90.00166 * 21 20 18 34 34 H 1.08001 * 120.08553 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1058 2.1273 -1.2577 5 6 3.4639 1.9136 -1.8751 6 1 4.1893 1.2853 -1.3799 7 6 3.7801 2.5203 -3.0722 8 7 2.8968 3.2858 -3.6750 9 14 5.4631 2.2549 -3.8378 10 1 6.2669 1.3588 -2.9681 11 1 5.3052 1.6342 -5.1775 12 1 6.1557 3.5613 -3.9761 13 6 2.3871 1.9656 1.1572 14 8 2.6921 3.1423 1.1738 15 6 2.4206 1.1761 2.4055 16 6 1.3565 0.3315 2.7287 17 6 1.3905 -0.4046 3.8942 18 6 2.4779 -0.3087 4.7470 19 9 2.5052 -1.0321 5.8877 20 6 3.5418 0.5301 4.4325 21 8 4.6045 0.6254 5.2752 22 6 3.5161 1.2723 3.2654 23 1 -0.3634 -1.0136 0.1692 24 1 -0.3633 0.6533 0.7933 25 1 -0.3634 0.3604 -0.9624 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 1.3353 1.7749 -1.9435 29 1 1.9591 3.1893 -1.0611 30 1 3.1194 3.7129 -4.5169 31 1 0.5070 0.2552 2.0662 32 1 0.5668 -1.0571 4.1432 33 1 5.3094 -0.0110 5.0928 34 1 4.3418 1.9237 3.0198 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001545055260.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:03 Heat of formation + Delta-G solvation = -112.368416 kcal Electronic energy + Delta-G solvation = -20140.866576 eV Core-core repulsion = 16759.996837 eV Total energy + Delta-G solvation = -3380.869739 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.01142 -41.52013 -39.87385 -37.73415 -37.10584 -34.92340 -32.07946 -31.97909 -30.80662 -29.05650 -25.69984 -24.52086 -24.06158 -23.57386 -20.80311 -19.31644 -18.75760 -18.59706 -18.09054 -17.68700 -17.10477 -16.88794 -16.34103 -15.95874 -15.77505 -15.22495 -15.01429 -14.90521 -14.36581 -14.34946 -13.85501 -13.61909 -13.32850 -13.11928 -13.03937 -12.88230 -12.64178 -12.41418 -12.14449 -11.91239 -11.84006 -11.70322 -10.84335 -10.65796 -10.13256 -9.72352 -9.50795 -8.24034 -6.38832 -0.36561 -0.00416 1.36375 1.38781 1.50084 1.65828 2.10332 2.38687 2.47088 2.84345 3.06163 3.21210 3.45851 3.62973 3.93449 4.11950 4.13089 4.37647 4.54005 4.57591 4.72376 4.85022 4.88467 4.96271 4.97646 5.06156 5.14781 5.22241 5.42541 5.54070 5.57091 5.80620 6.03706 6.61870 6.63612 6.71391 7.20612 7.36347 8.83522 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.024917 B = 0.005148 C = 0.004637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.467325 B = 5438.084970 C = 6037.124245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.087 3.913 3 N -0.590 5.590 4 C 0.259 3.741 5 C -0.545 4.545 6 H 0.054 0.946 7 C 0.010 3.990 8 N -0.927 5.927 9 Si 0.968 3.032 10 H -0.267 1.267 11 H -0.268 1.268 12 H -0.282 1.282 13 C 0.541 3.459 14 O -0.593 6.593 15 C -0.123 4.123 16 C -0.075 4.075 17 C -0.122 4.122 18 C 0.086 3.914 19 F -0.131 7.131 20 C 0.073 3.927 21 O -0.496 6.496 22 C -0.084 4.084 23 H 0.108 0.892 24 H 0.063 0.937 25 H 0.047 0.953 26 H 0.075 0.925 27 H 0.103 0.897 28 H 0.030 0.970 29 H 0.000 1.000 30 H 0.268 0.732 31 H 0.172 0.828 32 H 0.186 0.814 33 H 0.413 0.587 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.545 -13.835 14.110 20.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.034 4.034 3 N -0.319 5.319 4 C 0.138 3.862 5 C -0.584 4.584 6 H 0.072 0.928 7 C -0.189 4.189 8 N -0.566 5.566 9 Si 0.792 3.208 10 H -0.191 1.191 11 H -0.193 1.193 12 H -0.208 1.208 13 C 0.330 3.670 14 O -0.475 6.475 15 C -0.127 4.127 16 C -0.093 4.093 17 C -0.141 4.141 18 C 0.066 3.934 19 F -0.109 7.109 20 C 0.027 3.973 21 O -0.309 6.309 22 C -0.104 4.104 23 H 0.127 0.873 24 H 0.082 0.918 25 H 0.066 0.934 26 H 0.093 0.907 27 H 0.121 0.879 28 H 0.048 0.952 29 H 0.018 0.982 30 H 0.077 0.923 31 H 0.189 0.811 32 H 0.203 0.797 33 H 0.273 0.727 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.741 -12.730 14.218 19.447 hybrid contribution 1.347 0.175 -0.815 1.584 sum -2.394 -12.556 13.403 18.521 Atomic orbital electron populations 1.22325 0.93941 1.04287 1.02143 1.22060 0.95875 0.81241 1.04272 1.48201 1.61705 1.15168 1.06817 1.18805 0.96281 0.91009 0.80064 1.21725 1.00250 1.30175 1.06248 0.92818 1.25837 1.01363 0.94362 0.97385 1.70052 1.36550 1.32022 1.17991 0.85369 0.78967 0.78002 0.78474 1.19110 1.19325 1.20826 1.18797 0.77227 0.86599 0.84419 1.90737 1.51423 1.18410 1.86922 1.19829 0.97685 1.00114 0.95026 1.21931 0.97962 0.92453 0.96975 1.21340 0.98199 1.01667 0.92861 1.18385 0.96889 0.93392 0.84774 1.91510 1.96615 1.75358 1.47422 1.18148 0.90264 0.98062 0.90780 1.84844 1.29642 1.62433 1.53982 1.21285 0.98675 0.98468 0.91924 0.87316 0.91799 0.93359 0.90698 0.87868 0.95166 0.98200 0.92340 0.81122 0.79679 0.72707 0.85270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.75 9.15 71.98 0.66 -3.09 16 2 C 0.09 2.55 5.60 86.38 0.48 3.03 16 3 N -0.59 -24.80 2.46 -829.69 -2.04 -26.84 16 4 C 0.26 13.86 5.22 85.64 0.45 14.31 16 5 C -0.55 -31.17 9.39 25.60 0.24 -30.93 16 6 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 7 C 0.01 0.56 5.46 84.66 0.46 1.02 16 8 N -0.93 -55.54 13.29 21.45 0.28 -55.26 16 9 Si 0.97 44.44 29.54 68.60 2.03 46.47 16 10 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 11 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 12 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 13 C 0.54 23.31 7.26 86.75 0.63 23.94 16 14 O -0.59 -31.96 16.54 -3.93 -0.07 -32.02 16 15 C -0.12 -3.88 5.08 -20.10 -0.10 -3.98 16 16 C -0.08 -1.65 7.41 22.53 0.17 -1.48 16 17 C -0.12 -2.10 10.00 22.26 0.22 -1.88 16 18 C 0.09 1.81 7.31 22.54 0.16 1.98 16 19 F -0.13 -2.75 17.10 44.97 0.77 -1.98 16 20 C 0.07 1.80 6.70 22.49 0.15 1.95 16 21 O -0.50 -10.88 13.36 -93.12 -1.24 -12.12 16 22 C -0.08 -2.52 9.63 22.62 0.22 -2.30 16 23 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.06 1.36 6.32 -2.38 -0.02 1.34 16 25 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.07 2.31 8.13 -2.38 -0.02 2.29 16 27 H 0.10 2.42 5.10 -2.39 -0.01 2.40 16 28 H 0.03 1.62 8.07 -2.39 -0.02 1.60 16 29 H 0.00 -0.01 7.35 -2.39 -0.02 -0.03 16 30 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 31 H 0.17 3.15 3.70 -2.91 -0.01 3.14 16 32 H 0.19 1.72 8.06 -2.91 -0.02 1.70 16 33 H 0.41 4.82 9.06 -74.05 -0.67 4.15 16 34 H 0.13 4.23 8.06 -2.91 -0.02 4.21 16 Total: -1.00 -76.67 298.07 3.95 -72.72 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: 0.48 Total: 6.47 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: 3.74 Total: 2.56 kcal Atomic # 7 Polarization: -80.34 SS G_CDS: -1.76 Total: -82.09 kcal Atomic # 8 Polarization: -42.83 SS G_CDS: -1.31 Total: -44.14 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.77 Total: -1.98 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -76.67 3.95 -72.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001545055260.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.651 kcal (2) G-P(sol) polarization free energy of solvation -76.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds