Wall clock time and date at job start Mon Mar 30 2020 00:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47254 * 2 1 4 4 C 1.50697 * 109.47207 * 120.00276 * 2 1 3 5 5 H 1.08007 * 120.00363 * 119.99722 * 4 2 1 6 6 C 1.37877 * 120.00009 * 300.00092 * 4 2 1 7 7 N 1.31512 * 120.00131 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00257 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46680 * 59.99856 * 8 6 4 10 10 H 1.48496 * 109.47197 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47168 * 300.00406 * 8 6 4 12 12 N 1.46503 * 109.46995 * 240.00115 * 2 1 3 13 13 C 1.34778 * 119.99896 * 85.00367 * 12 2 1 14 14 O 1.21593 * 119.99956 * 359.97438 * 13 12 2 15 15 C 1.47525 * 119.99831 * 179.97438 * 13 12 2 16 16 C 1.36601 * 125.76849 * 179.97438 * 15 13 12 17 17 N 1.34811 * 106.83811 * 179.97438 * 16 15 13 18 18 C 1.46495 * 126.59602 * 180.02562 * 17 16 15 19 19 C 1.50698 * 109.47546 * 124.97404 * 18 17 16 20 20 N 1.34777 * 120.00075 * 179.97438 * 19 18 17 21 21 O 1.21284 * 119.99801 * 0.02562 * 19 18 17 22 22 N 1.40215 * 106.81108 * 0.02562 * 17 16 15 23 23 N 1.28756 * 108.36742 * 359.97438 * 22 17 16 24 24 H 1.09001 * 109.47154 * 59.99854 * 1 2 3 25 25 H 1.09002 * 109.47001 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47290 * 300.00016 * 1 2 3 27 27 H 0.96999 * 120.00897 * 179.97438 * 7 6 4 28 28 H 0.96997 * 120.00053 * 264.99910 * 12 2 1 29 29 H 1.07993 * 126.58084 * 359.96218 * 16 15 13 30 30 H 1.09002 * 109.47096 * 244.97589 * 18 17 16 31 31 H 1.08998 * 109.46976 * 4.96932 * 18 17 16 32 32 H 0.97005 * 120.00299 * 0.02562 * 20 19 18 33 33 H 0.97002 * 120.00041 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3213 -1.1205 4.0079 9 1 3.8064 -1.1210 4.0081 10 1 1.8269 -0.4201 5.2204 11 1 1.8259 -2.5204 4.0076 12 7 2.0183 -0.6906 -1.1962 13 6 2.1471 -0.0182 -2.3572 14 8 1.8575 1.1615 -2.4118 15 6 2.6393 -0.7135 -3.5616 16 6 2.8140 -0.1498 -4.7935 17 7 3.2763 -1.1216 -5.6056 18 6 3.6113 -0.9874 -7.0254 19 6 5.0288 -1.4459 -7.2526 20 7 5.5574 -1.4124 -8.4919 21 8 5.6935 -1.8459 -6.3204 22 7 3.3747 -2.2855 -4.8299 23 7 2.9919 -2.0085 -3.6322 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 0.7089 1.1613 3.4844 28 1 2.2490 -1.6317 -1.1527 29 1 2.6191 0.8771 -5.0650 30 1 2.9320 -1.5996 -7.6185 31 1 3.5147 0.0563 -7.3244 32 1 5.0256 -1.0928 -9.2376 33 1 6.4697 -1.7079 -8.6382 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001585745376.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:34 Heat of formation + Delta-G solvation = 25.351668 kcal Electronic energy + Delta-G solvation = -19504.989870 eV Core-core repulsion = 16182.304834 eV Total energy + Delta-G solvation = -3322.685036 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.07921 -39.83827 -38.46649 -34.75417 -34.63729 -34.19526 -32.27168 -30.82840 -29.24514 -28.15949 -25.17615 -23.47637 -22.90872 -21.28557 -20.77771 -19.44224 -18.46458 -17.69303 -17.35747 -16.37811 -15.99349 -15.47082 -15.29038 -15.16150 -14.50807 -14.32499 -14.12232 -13.73093 -13.13765 -12.98763 -12.32147 -11.94992 -11.62709 -11.16464 -11.02721 -10.89879 -10.85717 -10.67760 -10.26842 -10.26714 -10.18058 -10.14705 -9.25185 -9.08092 -8.96382 -8.47078 -7.83120 -6.04479 -4.12789 1.20748 1.85026 2.01945 2.11958 2.86878 3.34105 3.37830 3.40797 3.92117 3.98659 4.19556 4.20503 4.40734 4.41891 4.47328 5.02507 5.27567 5.33077 5.35005 6.07751 6.16642 6.29481 6.69034 6.90271 7.04379 7.21637 7.49957 7.63180 7.66209 7.77764 7.97493 8.13958 8.21757 8.75538 8.84771 9.15496 9.54090 11.01693 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.039332 B = 0.003682 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.717504 B = 7602.144293 C = 8022.734996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.051 0.949 4 C -0.533 4.533 5 H 0.063 0.937 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.688 5.688 13 C 0.587 3.413 14 O -0.555 6.555 15 C -0.082 4.082 16 C 0.082 3.918 17 N -0.364 5.364 18 C 0.106 3.894 19 C 0.503 3.497 20 N -0.852 5.852 21 O -0.506 6.506 22 N -0.044 5.044 23 N -0.203 5.203 24 H 0.015 0.985 25 H 0.028 0.972 26 H 0.091 0.909 27 H 0.264 0.736 28 H 0.398 0.602 29 H 0.204 0.796 30 H 0.127 0.873 31 H 0.134 0.866 32 H 0.403 0.597 33 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.361 -2.035 -24.329 24.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.163 3.837 3 H 0.069 0.931 4 C -0.571 4.571 5 H 0.081 0.919 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.730 3.270 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.201 1.201 12 N -0.335 5.335 13 C 0.369 3.631 14 O -0.434 6.434 15 C -0.221 4.221 16 C -0.072 4.072 17 N -0.151 5.151 18 C -0.020 4.020 19 C 0.284 3.716 20 N -0.418 5.418 21 O -0.378 6.378 22 N -0.024 5.024 23 N -0.078 5.078 24 H 0.034 0.966 25 H 0.047 0.953 26 H 0.110 0.890 27 H 0.074 0.926 28 H 0.231 0.769 29 H 0.221 0.779 30 H 0.145 0.855 31 H 0.152 0.848 32 H 0.231 0.769 33 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 4.719 -2.768 -23.426 24.057 hybrid contribution 0.344 0.212 0.074 0.411 sum 5.063 -2.556 -23.352 24.031 Atomic orbital electron populations 1.22084 0.98263 0.99299 1.00940 1.18816 0.91156 0.94018 0.79754 0.93118 1.21219 1.32365 1.13273 0.90250 0.91908 1.24870 0.94817 0.94961 0.99001 1.69890 1.36017 1.22508 1.23923 0.86491 0.79224 0.79630 0.81671 1.20148 1.21200 1.20102 1.46405 1.63180 1.14133 1.09757 1.16822 0.78569 0.85857 0.81862 1.90750 1.52861 1.14993 1.84829 1.21932 1.12472 0.91204 0.96469 1.23299 0.97507 0.96185 0.90209 1.49792 1.46159 1.09502 1.09618 1.21634 0.95694 1.05946 0.78699 1.20422 0.88819 0.78758 0.83581 1.43707 1.19107 1.69771 1.09221 1.90921 1.61335 1.44013 1.41527 1.82062 1.20166 1.04013 0.96146 1.74677 1.08189 1.13561 1.11345 0.96564 0.95322 0.89029 0.92580 0.76865 0.77899 0.85505 0.84804 0.76851 0.75987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.78 9.26 37.16 0.34 -3.43 16 2 C 0.26 7.03 2.56 -69.08 -0.18 6.85 16 3 H 0.05 1.52 7.58 -51.93 -0.39 1.12 16 4 C -0.53 -14.80 8.73 -34.44 -0.30 -15.10 16 5 H 0.06 1.69 7.74 -52.48 -0.41 1.29 16 6 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 7 N -0.89 -25.47 11.32 55.43 0.63 -24.84 16 8 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 N -0.69 -15.95 5.07 -55.98 -0.28 -16.23 16 13 C 0.59 12.81 7.78 -12.47 -0.10 12.71 16 14 O -0.56 -13.36 16.53 5.28 0.09 -13.27 16 15 C -0.08 -1.49 6.99 -83.55 -0.58 -2.08 16 16 C 0.08 1.11 11.27 -16.83 -0.19 0.92 16 17 N -0.36 -4.44 3.41 -62.25 -0.21 -4.65 16 18 C 0.11 0.61 7.02 -5.20 -0.04 0.58 16 19 C 0.50 4.06 8.14 -10.99 -0.09 3.97 16 20 N -0.85 -2.67 8.87 31.22 0.28 -2.40 16 21 O -0.51 -7.37 16.57 5.55 0.09 -7.28 16 22 N -0.04 -0.73 12.89 60.35 0.78 0.05 16 23 N -0.20 -3.78 12.04 32.85 0.40 -3.39 16 24 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.09 2.52 6.07 -51.93 -0.32 2.20 16 27 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 28 H 0.40 8.66 8.23 -40.82 -0.34 8.33 16 29 H 0.20 1.96 8.06 -52.49 -0.42 1.54 16 30 H 0.13 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.13 0.19 8.08 -51.93 -0.42 -0.23 16 32 H 0.40 -0.32 8.83 -40.82 -0.36 -0.68 16 33 H 0.41 1.23 8.93 -40.82 -0.36 0.87 16 LS Contribution 300.84 15.07 4.53 4.53 Total: -1.00 -38.56 300.84 -3.37 -41.94 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -3.42 Total: 2.99 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: -1.22 Total: 6.17 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: 1.58 Total: -51.46 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: 0.18 Total: -20.55 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -38.56 -3.37 -41.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001585745376.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.287 kcal (2) G-P(sol) polarization free energy of solvation -38.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds