Wall clock time and date at job start Mon Mar 30 2020 00:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47254 * 2 1 4 4 C 1.50697 * 109.47207 * 120.00276 * 2 1 3 5 5 H 1.08007 * 120.00363 * 119.99722 * 4 2 1 6 6 C 1.37877 * 120.00009 * 300.00092 * 4 2 1 7 7 N 1.31512 * 120.00131 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00257 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46680 * 59.99856 * 8 6 4 10 10 H 1.48496 * 109.47197 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47168 * 300.00406 * 8 6 4 12 12 N 1.46503 * 109.46995 * 240.00115 * 2 1 3 13 13 C 1.34778 * 119.99896 * 85.00367 * 12 2 1 14 14 O 1.21593 * 119.99956 * 359.97438 * 13 12 2 15 15 C 1.47525 * 119.99831 * 179.97438 * 13 12 2 16 16 C 1.36601 * 125.76849 * 179.97438 * 15 13 12 17 17 N 1.34811 * 106.83811 * 179.97438 * 16 15 13 18 18 C 1.46495 * 126.59602 * 180.02562 * 17 16 15 19 19 C 1.50698 * 109.47546 * 124.97404 * 18 17 16 20 20 N 1.34777 * 120.00075 * 179.97438 * 19 18 17 21 21 O 1.21284 * 119.99801 * 0.02562 * 19 18 17 22 22 N 1.40215 * 106.81108 * 0.02562 * 17 16 15 23 23 N 1.28756 * 108.36742 * 359.97438 * 22 17 16 24 24 H 1.09001 * 109.47154 * 59.99854 * 1 2 3 25 25 H 1.09002 * 109.47001 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47290 * 300.00016 * 1 2 3 27 27 H 0.96999 * 120.00897 * 179.97438 * 7 6 4 28 28 H 0.96997 * 120.00053 * 264.99910 * 12 2 1 29 29 H 1.07993 * 126.58084 * 359.96218 * 16 15 13 30 30 H 1.09002 * 109.47096 * 244.97589 * 18 17 16 31 31 H 1.08998 * 109.46976 * 4.96932 * 18 17 16 32 32 H 0.97005 * 120.00299 * 0.02562 * 20 19 18 33 33 H 0.97002 * 120.00041 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3213 -1.1205 4.0079 9 1 3.8064 -1.1210 4.0081 10 1 1.8269 -0.4201 5.2204 11 1 1.8259 -2.5204 4.0076 12 7 2.0183 -0.6906 -1.1962 13 6 2.1471 -0.0182 -2.3572 14 8 1.8575 1.1615 -2.4118 15 6 2.6393 -0.7135 -3.5616 16 6 2.8140 -0.1498 -4.7935 17 7 3.2763 -1.1216 -5.6056 18 6 3.6113 -0.9874 -7.0254 19 6 5.0288 -1.4459 -7.2526 20 7 5.5574 -1.4124 -8.4919 21 8 5.6935 -1.8459 -6.3204 22 7 3.3747 -2.2855 -4.8299 23 7 2.9919 -2.0085 -3.6322 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 0.7089 1.1613 3.4844 28 1 2.2490 -1.6317 -1.1527 29 1 2.6191 0.8771 -5.0650 30 1 2.9320 -1.5996 -7.6185 31 1 3.5147 0.0563 -7.3244 32 1 5.0256 -1.0928 -9.2376 33 1 6.4697 -1.7079 -8.6382 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001585745376.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:34 Heat of formation + Delta-G solvation = -9.554444 kcal Electronic energy + Delta-G solvation = -19506.503512 eV Core-core repulsion = 16182.304834 eV Total energy + Delta-G solvation = -3324.198678 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.22836 -40.58462 -40.16191 -36.72225 -35.61626 -34.76321 -34.26633 -32.15541 -30.80435 -29.30036 -27.32602 -24.98336 -23.89862 -22.62773 -21.97455 -21.04708 -19.68835 -18.53996 -18.25634 -17.64118 -17.18444 -16.98043 -16.70963 -16.28086 -16.03251 -15.61650 -15.44986 -14.90793 -14.69414 -14.36056 -13.85735 -13.63583 -13.10403 -13.01000 -12.85463 -12.72633 -12.31102 -12.25720 -12.14393 -11.80609 -11.11575 -11.03577 -11.02259 -10.73816 -10.58473 -10.33772 -9.73634 -8.16842 -6.33724 0.14469 0.71830 1.02049 1.45333 1.46398 1.47812 1.55602 2.31097 2.37820 2.39732 2.56639 3.13065 3.26772 3.54192 3.80497 3.95562 4.02577 4.10325 4.38021 4.69874 4.81652 4.95792 5.09921 5.36297 5.43381 5.59404 5.69194 5.81972 5.89291 6.10305 6.36905 6.71544 6.77783 7.03693 7.25421 7.29123 7.45174 8.89418 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.039332 B = 0.003682 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.717504 B = 7602.144293 C = 8022.734996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.271 3.729 3 H 0.009 0.991 4 C -0.554 4.554 5 H 0.066 0.934 6 C 0.019 3.981 7 N -0.914 5.914 8 Si 0.971 3.029 9 H -0.273 1.273 10 H -0.280 1.280 11 H -0.266 1.266 12 N -0.694 5.694 13 C 0.589 3.411 14 O -0.584 6.584 15 C -0.122 4.122 16 C 0.116 3.884 17 N -0.346 5.346 18 C 0.094 3.906 19 C 0.499 3.501 20 N -0.824 5.824 21 O -0.583 6.583 22 N -0.068 5.068 23 N -0.232 5.232 24 H 0.019 0.981 25 H 0.036 0.964 26 H 0.072 0.928 27 H 0.267 0.733 28 H 0.403 0.597 29 H 0.247 0.753 30 H 0.167 0.833 31 H 0.190 0.810 32 H 0.426 0.574 33 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.545 -2.129 -26.749 27.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.168 3.832 3 H 0.027 0.973 4 C -0.592 4.592 5 H 0.084 0.916 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.796 3.204 9 H -0.198 1.198 10 H -0.205 1.205 11 H -0.191 1.191 12 N -0.341 5.341 13 C 0.374 3.626 14 O -0.465 6.465 15 C -0.261 4.261 16 C -0.041 4.041 17 N -0.131 5.131 18 C -0.029 4.029 19 C 0.282 3.718 20 N -0.390 5.390 21 O -0.461 6.461 22 N -0.048 5.048 23 N -0.107 5.107 24 H 0.038 0.962 25 H 0.055 0.945 26 H 0.090 0.910 27 H 0.077 0.923 28 H 0.238 0.762 29 H 0.263 0.737 30 H 0.185 0.815 31 H 0.208 0.792 32 H 0.258 0.742 33 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 4.908 -2.882 -25.979 26.595 hybrid contribution 0.333 0.305 0.558 0.718 sum 5.241 -2.578 -25.420 26.083 Atomic orbital electron populations 1.21899 0.97747 0.99476 1.00081 1.18456 0.91508 0.92079 0.81158 0.97340 1.21510 1.32891 1.13641 0.91126 0.91623 1.25736 0.94782 0.95587 1.02030 1.70017 1.36720 1.23656 1.24786 0.85413 0.78581 0.78728 0.77707 1.19839 1.20548 1.19106 1.46219 1.63951 1.14323 1.09595 1.17210 0.77434 0.85564 0.82401 1.90713 1.54062 1.16201 1.85496 1.21521 1.15992 0.91879 0.96684 1.23815 0.94397 0.97414 0.88453 1.50106 1.43800 1.07745 1.11482 1.22424 0.94851 1.10280 0.75316 1.20836 0.89349 0.77764 0.83828 1.43530 1.19350 1.67652 1.08487 1.90911 1.63292 1.47899 1.44032 1.81947 1.20667 1.06149 0.96045 1.74638 1.09144 1.14125 1.12754 0.96184 0.94468 0.90972 0.92341 0.76207 0.73716 0.81545 0.79249 0.74157 0.75664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.02 9.26 71.98 0.67 -6.35 16 2 C 0.27 14.93 2.56 44.24 0.11 15.04 16 3 H 0.01 0.55 7.58 -2.39 -0.02 0.53 16 4 C -0.55 -31.39 8.73 25.60 0.22 -31.17 16 5 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 6 C 0.02 1.07 5.30 84.65 0.45 1.51 16 7 N -0.91 -53.46 11.32 21.45 0.24 -53.22 16 8 Si 0.97 44.02 29.54 68.60 2.03 46.05 16 9 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 10 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 11 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 12 N -0.69 -33.18 5.07 -449.28 -2.28 -35.45 16 13 C 0.59 26.20 7.78 86.69 0.67 26.88 16 14 O -0.58 -28.53 16.53 -4.01 -0.07 -28.60 16 15 C -0.12 -4.37 6.99 40.82 0.29 -4.09 16 16 C 0.12 2.80 11.27 83.85 0.95 3.75 16 17 N -0.35 -7.45 3.41 -350.85 -1.20 -8.64 16 18 C 0.09 0.65 7.02 85.63 0.60 1.25 16 19 C 0.50 6.68 8.14 87.66 0.71 7.40 16 20 N -0.82 -2.39 8.87 -173.53 -1.54 -3.93 16 21 O -0.58 -16.64 16.57 -3.04 -0.05 -16.69 16 22 N -0.07 -2.20 12.89 37.02 0.48 -1.73 16 23 N -0.23 -8.72 12.04 -49.99 -0.60 -9.32 16 24 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.07 4.08 6.07 -2.39 -0.01 4.06 16 27 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 28 H 0.40 18.19 8.23 -92.71 -0.76 17.42 16 29 H 0.25 3.63 8.06 -2.91 -0.02 3.61 16 30 H 0.17 -0.04 8.14 -2.39 -0.02 -0.05 16 31 H 0.19 -0.75 8.08 -2.39 -0.02 -0.77 16 32 H 0.43 -2.63 8.83 -92.70 -0.82 -3.45 16 33 H 0.41 1.44 8.93 -92.71 -0.83 0.62 16 Total: -1.00 -89.54 300.84 0.47 -89.06 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -1.21 Total: 8.25 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: 4.67 Total: 14.22 kcal Atomic # 7 Polarization: -107.39 SS G_CDS: -4.89 Total: -112.29 kcal Atomic # 8 Polarization: -45.18 SS G_CDS: -0.12 Total: -45.30 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -89.54 0.47 -89.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001585745376.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.509 kcal (2) G-P(sol) polarization free energy of solvation -89.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds