Wall clock time and date at job start Mon Mar 30 2020 00:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47336 * 2 1 4 4 C 1.50704 * 109.46659 * 240.00155 * 2 1 3 5 5 H 1.07998 * 120.00061 * 245.46068 * 4 2 1 6 6 C 1.37881 * 120.00067 * 65.46166 * 4 2 1 7 7 N 1.31513 * 119.99921 * 9.56165 * 6 4 2 8 8 Si 1.86797 * 120.00069 * 189.55690 * 6 4 2 9 9 H 1.48503 * 109.47184 * 84.99526 * 8 6 4 10 10 H 1.48498 * 109.47328 * 204.99467 * 8 6 4 11 11 H 1.48508 * 109.47146 * 324.99580 * 8 6 4 12 12 N 1.46495 * 109.47256 * 120.00739 * 2 1 3 13 13 C 1.34781 * 119.99409 * 274.99389 * 12 2 1 14 14 O 1.21589 * 120.00528 * 0.02562 * 13 12 2 15 15 C 1.47527 * 119.99532 * 179.97438 * 13 12 2 16 16 C 1.36597 * 125.76625 * 180.25020 * 15 13 12 17 17 N 1.34821 * 106.83953 * 180.17197 * 16 15 13 18 18 C 1.46498 * 126.59496 * 179.91058 * 17 16 15 19 19 C 1.50692 * 109.47240 * 124.71190 * 18 17 16 20 20 N 1.34774 * 120.00152 * 179.72181 * 19 18 17 21 21 O 1.21287 * 120.00257 * 359.97438 * 19 18 17 22 22 N 1.40209 * 106.80756 * 359.64453 * 17 16 15 23 23 N 1.28763 * 108.36915 * 0.22904 * 22 17 16 24 24 H 1.08997 * 109.47393 * 183.67861 * 1 2 3 25 25 H 1.09004 * 109.46925 * 303.67753 * 1 2 3 26 26 H 1.09002 * 109.47388 * 63.67435 * 1 2 3 27 27 H 0.96998 * 120.00135 * 180.02562 * 7 6 4 28 28 H 0.96998 * 120.00572 * 94.99319 * 12 2 1 29 29 H 1.08001 * 126.58737 * 0.06615 * 16 15 13 30 30 H 1.08995 * 109.47341 * 4.70577 * 18 17 16 31 31 H 1.09003 * 109.46968 * 244.71024 * 18 17 16 32 32 H 0.97009 * 120.00059 * 180.27671 * 20 19 18 33 33 H 0.97000 * 120.00320 * 0.27519 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.5784 -1.6371 -1.1340 6 6 1.7944 -0.1773 -2.4797 7 7 1.2992 1.0357 -2.5935 8 14 2.1757 -1.1779 -4.0103 9 1 1.0236 -2.0608 -4.3242 10 1 2.4224 -0.2613 -5.1522 11 1 3.3842 -2.0073 -3.7712 12 7 2.0183 -0.6907 1.1960 13 6 2.1471 -0.0184 2.3570 14 8 1.8576 1.1613 2.4119 15 6 2.6384 -0.7141 3.5616 16 6 2.8089 -0.1516 4.7947 17 7 3.2748 -1.1225 5.6058 18 6 3.6088 -0.9887 7.0259 19 6 2.8391 -2.0111 7.8215 20 7 2.9921 -2.0789 9.1588 21 8 2.0854 -2.7761 7.2579 22 7 3.3724 -2.2866 4.8303 23 7 2.9898 -2.0094 3.6325 24 1 -0.3634 -1.0255 0.0659 25 1 -0.3633 0.5699 0.8552 26 1 -0.3634 0.4557 -0.9211 27 1 1.1316 1.4106 -3.4723 28 1 2.2489 -1.6319 1.1525 29 1 2.6105 0.8744 5.0672 30 1 3.3451 0.0119 7.3684 31 1 4.6779 -1.1501 7.1645 32 1 2.4997 -2.7398 9.6705 33 1 3.5947 -1.4670 9.6097 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001585745379.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:37 Heat of formation + Delta-G solvation = -10.995996 kcal Electronic energy + Delta-G solvation = -19500.147082 eV Core-core repulsion = 16175.885893 eV Total energy + Delta-G solvation = -3324.261189 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.22506 -40.58061 -40.15782 -36.70055 -35.61109 -34.75871 -34.25552 -32.16881 -30.87542 -29.31200 -27.29006 -24.99709 -23.89827 -22.64453 -21.97674 -21.04900 -19.68801 -18.52689 -18.26185 -17.63472 -17.17854 -16.98251 -16.69061 -16.29730 -15.97487 -15.60103 -15.49021 -14.86787 -14.71716 -14.36685 -13.79756 -13.78219 -13.10541 -12.99797 -12.92072 -12.68351 -12.35600 -12.30543 -12.12932 -11.80644 -11.16056 -11.03038 -10.99750 -10.73470 -10.55757 -10.33795 -9.74447 -8.19698 -6.32383 0.14700 0.72128 1.02216 1.45467 1.46553 1.47250 1.56875 2.33311 2.35347 2.41238 2.56632 3.12287 3.27003 3.54254 3.80746 3.95648 4.02815 4.10552 4.38232 4.69092 4.78863 4.91057 5.04061 5.36367 5.40572 5.59555 5.64080 5.82242 5.86061 6.03444 6.37057 6.73786 6.77928 7.03895 7.25537 7.29619 7.45351 8.89704 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.045824 B = 0.003587 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.888579 B = 7803.400939 C = 8065.064005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.269 3.731 3 H 0.015 0.985 4 C -0.553 4.553 5 H 0.067 0.933 6 C 0.020 3.980 7 N -0.915 5.915 8 Si 0.969 3.031 9 H -0.270 1.270 10 H -0.283 1.283 11 H -0.267 1.267 12 N -0.694 5.694 13 C 0.589 3.411 14 O -0.584 6.584 15 C -0.122 4.122 16 C 0.115 3.885 17 N -0.346 5.346 18 C 0.094 3.906 19 C 0.500 3.500 20 N -0.824 5.824 21 O -0.582 6.582 22 N -0.068 5.068 23 N -0.232 5.232 24 H 0.042 0.958 25 H 0.022 0.978 26 H 0.055 0.945 27 H 0.267 0.733 28 H 0.404 0.596 29 H 0.247 0.753 30 H 0.190 0.810 31 H 0.167 0.833 32 H 0.412 0.588 33 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.998 -1.853 26.023 27.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.166 3.834 3 H 0.033 0.967 4 C -0.591 4.591 5 H 0.085 0.915 6 C -0.180 4.180 7 N -0.553 5.553 8 Si 0.793 3.207 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.191 1.191 12 N -0.341 5.341 13 C 0.374 3.626 14 O -0.465 6.465 15 C -0.260 4.260 16 C -0.041 4.041 17 N -0.131 5.131 18 C -0.029 4.029 19 C 0.283 3.717 20 N -0.390 5.390 21 O -0.461 6.461 22 N -0.048 5.048 23 N -0.106 5.106 24 H 0.061 0.939 25 H 0.041 0.959 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.238 0.762 29 H 0.263 0.737 30 H 0.207 0.793 31 H 0.184 0.816 32 H 0.244 0.756 33 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 6.711 -2.765 25.437 26.452 hybrid contribution -0.143 0.214 -0.498 0.560 sum 6.567 -2.552 24.939 25.915 Atomic orbital electron populations 1.21854 0.98102 0.99285 0.99561 1.18466 0.91106 0.92577 0.81239 0.96744 1.21494 1.37432 1.08995 0.91148 0.91463 1.25746 0.94649 0.95520 1.02126 1.70109 1.44868 1.15269 1.25062 0.85410 0.78913 0.78365 0.77978 1.19578 1.20813 1.19114 1.46204 1.63978 1.14312 1.09566 1.17210 0.77458 0.85557 0.82380 1.90715 1.54024 1.16245 1.85468 1.21518 1.16017 0.91723 0.96785 1.23817 0.93997 0.97714 0.88583 1.50109 1.44203 1.07611 1.11209 1.22422 1.04202 1.03678 0.72595 1.20821 0.81990 0.84602 0.84326 1.43530 1.48982 1.40457 1.06052 1.90908 1.39810 1.44053 1.71307 1.81947 1.21673 1.05501 0.95683 1.74640 1.09549 1.13715 1.12732 0.93889 0.95895 0.92638 0.92382 0.76189 0.73745 0.79262 0.81614 0.75649 0.74172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.74 9.36 71.98 0.67 -6.07 16 2 C 0.27 14.75 2.42 44.25 0.11 14.86 16 3 H 0.01 0.92 7.52 -2.39 -0.02 0.90 16 4 C -0.55 -31.11 8.66 25.60 0.22 -30.89 16 5 H 0.07 3.65 7.74 -2.91 -0.02 3.62 16 6 C 0.02 1.13 5.17 84.66 0.44 1.57 16 7 N -0.92 -54.03 12.16 21.45 0.26 -53.76 16 8 Si 0.97 43.78 29.55 68.60 2.03 45.80 16 9 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 12 N -0.69 -33.00 5.07 -449.28 -2.28 -35.27 16 13 C 0.59 26.16 7.78 86.69 0.67 26.83 16 14 O -0.58 -28.55 16.53 -4.00 -0.07 -28.62 16 15 C -0.12 -4.35 6.99 40.82 0.29 -4.07 16 16 C 0.12 2.80 11.27 83.85 0.95 3.74 16 17 N -0.35 -7.44 3.41 -350.84 -1.20 -8.64 16 18 C 0.09 0.65 7.02 85.63 0.60 1.25 16 19 C 0.50 6.58 8.13 87.65 0.71 7.30 16 20 N -0.82 -2.25 8.87 -173.54 -1.54 -3.79 16 21 O -0.58 -16.39 16.57 -3.05 -0.05 -16.44 16 22 N -0.07 -2.20 12.88 37.02 0.48 -1.72 16 23 N -0.23 -8.68 12.04 -49.99 -0.60 -9.28 16 24 H 0.04 2.07 8.14 -2.39 -0.02 2.06 16 25 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.05 3.07 6.83 -2.39 -0.02 3.05 16 27 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 28 H 0.40 18.05 8.21 -92.71 -0.76 17.29 16 29 H 0.25 3.65 8.06 -2.91 -0.02 3.62 16 30 H 0.19 -0.75 8.08 -2.39 -0.02 -0.77 16 31 H 0.17 0.00 8.14 -2.39 -0.02 -0.02 16 32 H 0.41 1.35 8.93 -92.70 -0.83 0.52 16 33 H 0.43 -2.65 8.83 -92.71 -0.82 -3.47 16 Total: -1.00 -89.61 302.14 0.48 -89.13 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -1.22 Total: 8.07 kcal Atomic # 6 Polarization: 9.86 SS G_CDS: 4.66 Total: 14.52 kcal Atomic # 7 Polarization: -107.59 SS G_CDS: -4.88 Total: -112.47 kcal Atomic # 8 Polarization: -44.94 SS G_CDS: -0.12 Total: -45.06 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -89.61 0.48 -89.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001585745379.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.132 kcal (2) G-P(sol) polarization free energy of solvation -89.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds