Wall clock time and date at job start Mon Mar 30 2020 00:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47356 * 2 1 4 4 C 1.50695 * 109.47261 * 239.99641 * 2 1 3 5 5 H 1.08002 * 120.00262 * 240.00202 * 4 2 1 6 6 C 1.37881 * 119.99815 * 60.00346 * 4 2 1 7 7 N 1.31517 * 119.99938 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99914 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47233 * 60.00118 * 8 6 4 10 10 H 1.48506 * 109.46832 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47248 * 299.99578 * 8 6 4 12 12 N 1.46904 * 109.47308 * 119.99885 * 2 1 3 13 13 C 1.46899 * 111.00029 * 275.00154 * 12 2 1 14 14 C 1.50703 * 109.47107 * 179.97438 * 13 12 2 15 15 C 1.38470 * 119.82559 * 89.99981 * 14 13 12 16 16 C 1.37832 * 120.22722 * 179.97438 * 15 14 13 17 17 C 1.39723 * 119.87204 * 0.02562 * 16 15 14 18 18 C 1.47565 * 120.17356 * 179.97438 * 17 16 15 19 19 O 1.21484 * 120.00028 * 179.97438 * 18 17 16 20 20 O 1.34736 * 119.99851 * 359.97438 * 18 17 16 21 21 C 1.39879 * 119.65260 * 359.97438 * 17 16 15 22 22 F 1.35099 * 120.10834 * 180.02562 * 21 17 16 23 23 C 1.38208 * 119.82165 * 269.72251 * 14 13 12 24 24 H 1.09001 * 109.46997 * 300.00072 * 1 2 3 25 25 H 1.08999 * 109.47404 * 60.00168 * 1 2 3 26 26 H 1.09004 * 109.47538 * 180.02562 * 1 2 3 27 27 H 0.97001 * 120.00067 * 180.02562 * 7 6 4 28 28 H 1.00902 * 111.00190 * 151.03855 * 12 2 1 29 29 H 1.09002 * 109.47043 * 299.99792 * 13 12 2 30 30 H 1.09001 * 109.47354 * 59.99854 * 13 12 2 31 31 H 1.07999 * 119.88781 * 359.97438 * 15 14 13 32 32 H 1.08004 * 120.06696 * 180.02562 * 16 15 14 33 33 H 0.96697 * 116.99850 * 180.02562 * 20 18 17 34 34 H 1.07998 * 119.94152 * 359.97438 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 1.8257 -2.5203 -4.0076 10 1 1.8260 -0.4207 -5.2204 11 1 3.8063 -1.1210 -4.0081 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2226 2.3469 14 6 2.5873 -0.5218 3.5561 15 6 3.9465 -0.5722 3.8158 16 6 4.4173 -1.2503 4.9196 17 6 3.5198 -1.8892 5.7789 18 6 4.0167 -2.6175 6.9623 19 8 3.2335 -3.1716 7.7076 20 8 5.3389 -2.6680 7.2161 21 6 2.1479 -1.8350 5.5116 22 9 1.2719 -2.4491 6.3366 23 6 1.6909 -1.1457 4.4030 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 0.7081 1.1608 -3.4844 28 1 2.9173 -1.1206 1.0287 29 1 2.7588 1.0462 2.1182 30 1 1.0870 0.6163 2.5526 31 1 4.6401 -0.0786 3.1512 32 1 5.4780 -1.2876 5.1200 33 1 5.6166 -3.1571 8.0027 34 1 0.6318 -1.0980 4.1967 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592221568.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:18 Heat of formation + Delta-G solvation = -114.563491 kcal Electronic energy + Delta-G solvation = -19385.984523 eV Core-core repulsion = 16005.019598 eV Total energy + Delta-G solvation = -3380.964925 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.94985 -40.43027 -38.98193 -36.26630 -35.96535 -33.17350 -31.50325 -30.70260 -28.57402 -25.89211 -25.06730 -23.15810 -22.70733 -21.05626 -19.88560 -18.34226 -17.72608 -16.95938 -16.55640 -16.16469 -16.10311 -15.28171 -15.04314 -14.73053 -14.41422 -13.87765 -13.79804 -13.53173 -13.23290 -12.65891 -12.28521 -12.03775 -11.86574 -11.74354 -11.54287 -11.16846 -10.92092 -10.84238 -10.68251 -10.37889 -10.21051 -10.07488 -9.16082 -8.92679 -8.85593 -8.54015 -7.44855 -6.09645 -4.16765 0.43047 1.08686 2.34803 2.74708 3.27133 3.32116 3.34661 3.48067 4.00777 4.34668 4.50090 4.70011 4.83258 5.11499 5.16591 5.21588 5.41126 5.59418 5.65542 5.84981 5.94252 6.02477 6.09189 6.22943 6.46705 6.66104 6.78414 7.04255 7.12250 7.37576 7.66895 7.69696 7.79013 8.17432 8.24246 8.52481 8.91975 9.49622 10.96570 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.033892 B = 0.003659 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.951606 B = 7651.368008 C = 8004.872664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.212 3.788 3 H 0.004 0.996 4 C -0.522 4.522 5 H 0.060 0.940 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.681 5.681 13 C 0.086 3.914 14 C 0.004 3.996 15 C -0.142 4.142 16 C -0.033 4.033 17 C -0.182 4.182 18 C 0.529 3.471 19 O -0.507 6.507 20 O -0.512 6.512 21 C 0.165 3.835 22 F -0.118 7.118 23 C -0.149 4.149 24 H 0.004 0.996 25 H 0.082 0.918 26 H 0.032 0.968 27 H 0.262 0.738 28 H 0.334 0.666 29 H 0.040 0.960 30 H 0.080 0.920 31 H 0.138 0.862 32 H 0.145 0.855 33 H 0.414 0.586 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.245 -2.045 15.518 17.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.105 3.895 3 H 0.021 0.979 4 C -0.560 4.560 5 H 0.078 0.922 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.726 3.274 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.313 5.313 13 C -0.043 4.043 14 C 0.003 3.997 15 C -0.161 4.161 16 C -0.051 4.051 17 C -0.184 4.184 18 C 0.373 3.627 19 O -0.396 6.396 20 O -0.324 6.324 21 C 0.145 3.855 22 F -0.096 7.096 23 C -0.168 4.168 24 H 0.023 0.977 25 H 0.100 0.900 26 H 0.052 0.948 27 H 0.072 0.928 28 H 0.151 0.849 29 H 0.058 0.942 30 H 0.099 0.901 31 H 0.156 0.844 32 H 0.163 0.837 33 H 0.272 0.728 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 6.146 -2.116 15.408 16.723 hybrid contribution 1.057 -0.387 -0.425 1.203 sum 7.202 -2.503 14.982 16.811 Atomic orbital electron populations 1.21735 0.97713 0.99507 0.99477 1.19151 0.92743 0.92414 0.85208 0.97858 1.21196 1.31811 1.12663 0.90353 0.92181 1.24911 0.94949 0.94953 0.99072 1.69879 1.36371 1.22820 1.23724 0.86564 0.79075 0.79817 0.81971 1.20149 1.21265 1.20282 1.60842 1.32369 1.32467 1.05599 1.21073 1.00759 0.93553 0.88898 1.20281 0.92664 0.92453 0.94266 1.21200 0.95420 1.01351 0.98084 1.21287 0.99676 0.92228 0.91897 1.18989 0.92534 1.08518 0.98346 1.20627 0.80098 0.77578 0.84402 1.90945 1.56898 1.43483 1.48278 1.84545 1.25591 1.71922 1.50342 1.17684 0.85290 0.93309 0.89255 1.91585 1.67841 1.79921 1.70274 1.21071 1.02137 0.99874 0.93729 0.97652 0.89964 0.94842 0.92765 0.84881 0.94229 0.90143 0.84385 0.83712 0.72759 0.83423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 9.19 37.15 0.34 -2.66 16 2 C 0.21 5.07 2.60 -68.87 -0.18 4.89 16 3 H 0.00 0.10 7.80 -51.93 -0.40 -0.31 16 4 C -0.52 -13.74 8.59 -34.44 -0.30 -14.04 16 5 H 0.06 1.56 7.62 -52.49 -0.40 1.16 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.65 11.32 55.43 0.63 -24.02 16 8 Si 0.90 20.68 29.54 -169.99 -5.02 15.65 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 12 N -0.68 -13.37 6.29 -109.22 -0.69 -14.05 16 13 C 0.09 1.37 5.60 -4.98 -0.03 1.34 16 14 C 0.00 0.06 5.40 -104.55 -0.56 -0.51 16 15 C -0.14 -1.63 9.67 -39.64 -0.38 -2.02 16 16 C -0.03 -0.35 9.62 -39.18 -0.38 -0.73 16 17 C -0.18 -2.31 5.88 -104.92 -0.62 -2.93 16 18 C 0.53 6.57 8.27 34.53 0.29 6.86 16 19 O -0.51 -7.85 16.13 -19.25 -0.31 -8.16 16 20 O -0.51 -4.37 12.68 -40.59 -0.51 -4.88 16 21 C 0.16 2.31 7.29 -38.94 -0.28 2.02 16 22 F -0.12 -1.84 15.55 2.25 0.04 -1.80 16 23 C -0.15 -2.02 9.66 -39.56 -0.38 -2.40 16 24 H 0.00 0.10 7.45 -51.93 -0.39 -0.29 16 25 H 0.08 2.15 6.07 -51.93 -0.32 1.83 16 26 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 28 H 0.33 6.39 8.22 -39.29 -0.32 6.06 16 29 H 0.04 0.61 8.00 -51.93 -0.42 0.20 16 30 H 0.08 1.28 7.37 -51.93 -0.38 0.90 16 31 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 32 H 0.15 1.21 7.61 -52.48 -0.40 0.81 16 33 H 0.41 1.62 9.11 45.56 0.42 2.04 16 34 H 0.15 1.91 8.06 -52.49 -0.42 1.49 16 LS Contribution 301.71 15.07 4.55 4.55 Total: -1.00 -30.55 301.71 -6.92 -37.47 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -3.02 Total: 3.81 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -2.58 Total: -8.56 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: -0.06 Total: -38.08 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: -0.83 Total: -13.05 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.55 -6.92 -37.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221568.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.094 kcal (2) G-P(sol) polarization free energy of solvation -30.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds