Wall clock time and date at job start Mon Mar 30 2020 00:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47356 * 2 1 4 4 C 1.50695 * 109.47261 * 239.99641 * 2 1 3 5 5 H 1.08002 * 120.00262 * 240.00202 * 4 2 1 6 6 C 1.37881 * 119.99815 * 60.00346 * 4 2 1 7 7 N 1.31517 * 119.99938 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99914 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47233 * 60.00118 * 8 6 4 10 10 H 1.48506 * 109.46832 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47248 * 299.99578 * 8 6 4 12 12 N 1.46904 * 109.47308 * 119.99885 * 2 1 3 13 13 C 1.46899 * 111.00029 * 275.00154 * 12 2 1 14 14 C 1.50703 * 109.47107 * 179.97438 * 13 12 2 15 15 C 1.38470 * 119.82559 * 89.99981 * 14 13 12 16 16 C 1.37832 * 120.22722 * 179.97438 * 15 14 13 17 17 C 1.39723 * 119.87204 * 0.02562 * 16 15 14 18 18 C 1.47565 * 120.17356 * 179.97438 * 17 16 15 19 19 O 1.21484 * 120.00028 * 179.97438 * 18 17 16 20 20 O 1.34736 * 119.99851 * 359.97438 * 18 17 16 21 21 C 1.39879 * 119.65260 * 359.97438 * 17 16 15 22 22 F 1.35099 * 120.10834 * 180.02562 * 21 17 16 23 23 C 1.38208 * 119.82165 * 269.72251 * 14 13 12 24 24 H 1.09001 * 109.46997 * 300.00072 * 1 2 3 25 25 H 1.08999 * 109.47404 * 60.00168 * 1 2 3 26 26 H 1.09004 * 109.47538 * 180.02562 * 1 2 3 27 27 H 0.97001 * 120.00067 * 180.02562 * 7 6 4 28 28 H 1.00902 * 111.00190 * 151.03855 * 12 2 1 29 29 H 1.09002 * 109.47043 * 299.99792 * 13 12 2 30 30 H 1.09001 * 109.47354 * 59.99854 * 13 12 2 31 31 H 1.07999 * 119.88781 * 359.97438 * 15 14 13 32 32 H 1.08004 * 120.06696 * 180.02562 * 16 15 14 33 33 H 0.96697 * 116.99850 * 180.02562 * 20 18 17 34 34 H 1.07998 * 119.94152 * 359.97438 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 1.8257 -2.5203 -4.0076 10 1 1.8260 -0.4207 -5.2204 11 1 3.8063 -1.1210 -4.0081 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2226 2.3469 14 6 2.5873 -0.5218 3.5561 15 6 3.9465 -0.5722 3.8158 16 6 4.4173 -1.2503 4.9196 17 6 3.5198 -1.8892 5.7789 18 6 4.0167 -2.6175 6.9623 19 8 3.2335 -3.1716 7.7076 20 8 5.3389 -2.6680 7.2161 21 6 2.1479 -1.8350 5.5116 22 9 1.2719 -2.4491 6.3366 23 6 1.6909 -1.1457 4.4030 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 0.7081 1.1608 -3.4844 28 1 2.9173 -1.1206 1.0287 29 1 2.7588 1.0462 2.1182 30 1 1.0870 0.6163 2.5526 31 1 4.6401 -0.0786 3.1512 32 1 5.4780 -1.2876 5.1200 33 1 5.6166 -3.1571 8.0027 34 1 0.6318 -1.0980 4.1967 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592221568.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:18 Heat of formation + Delta-G solvation = -134.941809 kcal Electronic energy + Delta-G solvation = -19386.868193 eV Core-core repulsion = 16005.019598 eV Total energy + Delta-G solvation = -3381.848595 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.05717 -41.36653 -40.00557 -37.59550 -37.11691 -34.83005 -32.94116 -31.72263 -30.16160 -27.50854 -26.74229 -24.19922 -23.78178 -22.11455 -21.68641 -19.23378 -18.88361 -18.40757 -17.74848 -17.37608 -17.11743 -16.81687 -16.30140 -16.01766 -15.59954 -15.41962 -15.05225 -14.82256 -14.29489 -14.18063 -13.53637 -13.38112 -13.21192 -12.94501 -12.77535 -12.68678 -12.60700 -12.36486 -12.21324 -12.14905 -11.91278 -11.61696 -10.89688 -10.55300 -10.16484 -9.87543 -9.06305 -8.11596 -6.25331 -0.57296 0.11985 1.37899 1.45275 1.47083 1.54164 1.92010 2.42411 2.50717 2.99518 3.17842 3.47997 3.63920 3.91331 3.97044 4.16683 4.23226 4.42503 4.64661 4.78373 4.87123 4.92733 4.98425 5.06882 5.10707 5.23729 5.43143 5.48305 5.49734 5.67109 5.69376 5.87780 6.24699 6.45271 6.76169 6.90034 7.00303 7.45175 8.93654 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.033892 B = 0.003659 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.951606 B = 7651.368008 C = 8004.872664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.216 3.784 3 H -0.021 1.021 4 C -0.538 4.538 5 H 0.061 0.939 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.960 3.040 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.268 1.268 12 N -0.682 5.682 13 C 0.091 3.909 14 C -0.005 4.005 15 C -0.133 4.133 16 C -0.016 4.016 17 C -0.186 4.186 18 C 0.535 3.465 19 O -0.545 6.545 20 O -0.495 6.495 21 C 0.143 3.857 22 F -0.133 7.133 23 C -0.152 4.152 24 H 0.025 0.975 25 H 0.056 0.944 26 H 0.025 0.975 27 H 0.262 0.738 28 H 0.337 0.663 29 H 0.047 0.953 30 H 0.076 0.924 31 H 0.160 0.840 32 H 0.178 0.822 33 H 0.436 0.564 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.312 -2.461 15.907 18.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.108 3.892 3 H -0.003 1.003 4 C -0.576 4.576 5 H 0.079 0.921 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.785 3.215 9 H -0.200 1.200 10 H -0.212 1.212 11 H -0.193 1.193 12 N -0.313 5.313 13 C -0.038 4.038 14 C -0.006 4.006 15 C -0.151 4.151 16 C -0.034 4.034 17 C -0.189 4.189 18 C 0.380 3.620 19 O -0.437 6.437 20 O -0.310 6.310 21 C 0.124 3.876 22 F -0.111 7.111 23 C -0.171 4.171 24 H 0.044 0.956 25 H 0.075 0.925 26 H 0.044 0.956 27 H 0.071 0.929 28 H 0.155 0.845 29 H 0.065 0.935 30 H 0.094 0.906 31 H 0.177 0.823 32 H 0.195 0.805 33 H 0.298 0.702 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 8.251 -2.541 15.825 18.027 hybrid contribution 0.491 -0.246 -0.461 0.717 sum 8.742 -2.786 15.365 17.896 Atomic orbital electron populations 1.21576 0.97901 0.98810 0.99214 1.18927 0.92610 0.91177 0.86473 1.00312 1.21563 1.31769 1.12755 0.91552 0.92130 1.25685 0.95168 0.95625 1.01937 1.70006 1.37362 1.24053 1.24227 0.85589 0.78874 0.78549 0.78469 1.19968 1.21169 1.19337 1.60682 1.32700 1.32963 1.04987 1.21012 1.01023 0.93393 0.88360 1.20056 0.93687 0.93258 0.93583 1.21438 0.94688 1.00628 0.98350 1.21577 1.00814 0.90456 0.90543 1.19217 0.92270 1.08485 0.98889 1.20566 0.80896 0.76739 0.83762 1.90938 1.58136 1.45114 1.49482 1.84486 1.23106 1.71796 1.51562 1.17872 0.85928 0.94257 0.89582 1.91543 1.68454 1.80380 1.70759 1.21055 1.02260 0.99945 0.93823 0.95627 0.92490 0.95576 0.92855 0.84493 0.93487 0.90577 0.82264 0.80506 0.70184 0.83651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.59 9.19 71.98 0.66 -4.93 16 2 C 0.22 10.37 2.60 44.16 0.11 10.48 16 3 H -0.02 -1.08 7.80 -2.39 -0.02 -1.10 16 4 C -0.54 -28.25 8.59 25.60 0.22 -28.03 16 5 H 0.06 3.10 7.62 -2.91 -0.02 3.08 16 6 C 0.02 0.82 5.30 84.66 0.45 1.26 16 7 N -0.92 -51.30 11.32 21.45 0.24 -51.05 16 8 Si 0.96 42.10 29.54 68.60 2.03 44.13 16 9 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 10 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 12 N -0.68 -26.27 6.29 -499.47 -3.14 -29.41 16 13 C 0.09 2.78 5.60 85.56 0.48 3.26 16 14 C -0.01 -0.13 5.40 -19.82 -0.11 -0.23 16 15 C -0.13 -2.65 9.67 22.23 0.22 -2.44 16 16 C -0.02 -0.29 9.62 22.53 0.22 -0.07 16 17 C -0.19 -4.38 5.88 -20.06 -0.12 -4.50 16 18 C 0.53 12.26 8.27 70.28 0.58 12.84 16 19 O -0.54 -16.46 16.13 19.89 0.32 -16.14 16 20 O -0.50 -6.81 12.68 -56.47 -0.72 -7.52 16 21 C 0.14 3.94 7.29 22.69 0.17 4.10 16 22 F -0.13 -4.19 15.55 44.97 0.70 -3.49 16 23 C -0.15 -4.02 9.66 22.28 0.22 -3.81 16 24 H 0.02 1.07 7.45 -2.39 -0.02 1.05 16 25 H 0.06 3.02 6.07 -2.39 -0.01 3.01 16 26 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 28 H 0.34 12.51 8.22 -89.69 -0.74 11.77 16 29 H 0.05 1.38 8.00 -2.39 -0.02 1.37 16 30 H 0.08 2.38 7.37 -2.39 -0.02 2.36 16 31 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16 32 H 0.18 2.08 7.61 -2.91 -0.02 2.06 16 33 H 0.44 1.99 9.11 -74.06 -0.67 1.31 16 34 H 0.15 3.80 8.06 -2.91 -0.02 3.78 16 Total: -1.00 -65.63 301.71 2.26 -63.37 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -0.26 Total: 12.19 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: 3.09 Total: -12.06 kcal Atomic # 7 Polarization: -77.56 SS G_CDS: -2.90 Total: -80.46 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.40 Total: -23.66 kcal Atomic # 9 Polarization: -4.19 SS G_CDS: 0.70 Total: -3.49 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Total: -65.63 2.26 -63.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221568.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.577 kcal (2) G-P(sol) polarization free energy of solvation -65.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds